RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 ARHGAP15Q53QZ3 475 aa21.06■□□□□ 0.96
CPSF1-209ENST00000532725 CDKAL1Q5VV42 579 aa21.06■□□□□ 0.96
CPSF1-209ENST00000532725 GBP6Q6ZN66 633 aa21.06■□□□□ 0.96
CPSF1-209ENST00000532725 NUP93Q8N1F7 819 aa21.06■□□□□ 0.96
CPSF1-209ENST00000532725 KREMEN1Q96MU8 473 aa21.06■□□□□ 0.96
CPSF1-209ENST00000532725 KXD1Q9BQD3 176 aa21.06■□□□□ 0.96
CPSF1-209ENST00000532725 NDST4Q9H3R1 872 aa21.06■□□□□ 0.96
CPSF1-209ENST00000532725 SLITRK6Q9H5Y7 841 aa21.06■□□□□ 0.96
CPSF1-209ENST00000532725 DMAP1Q9NPF5 467 aaPredicted RBP21.06■□□□□ 0.96
CPSF1-209ENST00000532725 KRT82Q9NSB4 513 aa21.06■□□□□ 0.96
CPSF1-209ENST00000532725 FANCLQ9NW38 375 aa21.06■□□□□ 0.96
CPSF1-209ENST00000532725 IL37Q9NZH6 218 aa21.06■□□□□ 0.96
CPSF1-209ENST00000532725 GCNT4Q9P109 453 aa21.06■□□□□ 0.96
CPSF1-209ENST00000532725 VIPR2P41587 438 aa21.05■□□□□ 0.96
CPSF1-209ENST00000532725 MAP3K7CLP57077 242 aa21.05■□□□□ 0.96
CPSF1-209ENST00000532725 EXOC3L4Q17RC7 722 aa21.05■□□□□ 0.96
CPSF1-209ENST00000532725 TRIM65Q6PJ69 517 aa21.05■□□□□ 0.96
CPSF1-209ENST00000532725 MON1AQ86VX9 555 aa21.05■□□□□ 0.96
CPSF1-209ENST00000532725 ARID3BQ8IVW6 561 aaPredicted RBP21.05■□□□□ 0.96
CPSF1-209ENST00000532725 ASIC4Q96FT7 647 aa21.05■□□□□ 0.96
CPSF1-209ENST00000532725 GCNAQ96QF7 691 aa21.05■□□□□ 0.96
CPSF1-209ENST00000532725 UBE2TQ9NPD8 197 aaPredicted RBP21.05■□□□□ 0.96
CPSF1-209ENST00000532725 EHD2Q9NZN4 543 aa21.05■□□□□ 0.96
CPSF1-209ENST00000532725 ZMYM5Q9UJ78 669 aa21.05■□□□□ 0.96
CPSF1-209ENST00000532725 GREB1Q4ZG55 1949 aa21.04■□□□□ 0.96
CPSF1-209ENST00000532725 RNF225M0QZC1 329 aaPredicted RBP21.04■□□□□ 0.96
CPSF1-209ENST00000532725 LETM1O95202 739 aaPredicted RBP21.04■□□□□ 0.96
CPSF1-209ENST00000532725 FAM200BP0CF97 657 aa21.04■□□□□ 0.96
CPSF1-209ENST00000532725 SRFP11831 508 aa21.04■□□□□ 0.96
CPSF1-209ENST00000532725 PRKCSHP14314 528 aaPredicted RBP21.04■□□□□ 0.96
CPSF1-209ENST00000532725 DDX6P26196 483 aaKnown RBP eCLIP21.04■□□□□ 0.96
CPSF1-209ENST00000532725 PON1P27169 355 aa21.04■□□□□ 0.96
CPSF1-209ENST00000532725 GPC5P78333 572 aa21.04■□□□□ 0.96
CPSF1-209ENST00000532725 NCAPHQ15003 741 aa21.04■□□□□ 0.96
CPSF1-209ENST00000532725 ARHGAP17Q68EM7 881 aa21.04■□□□□ 0.96
CPSF1-209ENST00000532725 TXNDC8Q6A555 127 aa21.04■□□□□ 0.96
CPSF1-209ENST00000532725 CLEC20AQ6ZU45 233 aa21.04■□□□□ 0.96
CPSF1-209ENST00000532725 GPIHBP1Q8IV16 184 aa21.04■□□□□ 0.96
CPSF1-209ENST00000532725 MAB21L3Q8N8X9 362 aa21.04■□□□□ 0.96
CPSF1-209ENST00000532725 SCAMP5Q8TAC9 235 aa21.04■□□□□ 0.96
CPSF1-209ENST00000532725 MRPS31Q92665 395 aaKnown RBP21.04■□□□□ 0.96
CPSF1-209ENST00000532725 DUSP16Q9BY84 665 aa21.04■□□□□ 0.96
CPSF1-209ENST00000532725 KIAA1257Q9ULG3 409 aa21.04■□□□□ 0.96
CPSF1-209ENST00000532725 FAM86C2PA6NEL3 165 aa21.03■□□□□ 0.96
CPSF1-209ENST00000532725 HHLA1C9JL84 531 aa21.03■□□□□ 0.96
CPSF1-209ENST00000532725 RTN3O95197 1032 aaPredicted RBP21.03■□□□□ 0.96
CPSF1-209ENST00000532725 MYL5Q02045 173 aa21.03■□□□□ 0.96
CPSF1-209ENST00000532725 TAF10Q12962 218 aa21.03■□□□□ 0.96
CPSF1-209ENST00000532725 DPY19L2P1Q6NXN4 242 aa21.03■□□□□ 0.96
CPSF1-209ENST00000532725 TMEM270Q6UE05 265 aa21.03■□□□□ 0.96
CPSF1-209ENST00000532725 CMTM8Q8IZV2 173 aa21.03■□□□□ 0.96
CPSF1-209ENST00000532725 JAKMIP2Q96AA8 810 aa21.03■□□□□ 0.96
CPSF1-209ENST00000532725 E2F7Q96AV8 911 aa21.03■□□□□ 0.96
CPSF1-209ENST00000532725 RSPRY1Q96DX4 576 aa21.03■□□□□ 0.96
CPSF1-209ENST00000532725 FUCA2Q9BTY2 467 aa21.03■□□□□ 0.96
CPSF1-209ENST00000532725 SLC2A4RGQ9NR83 387 aa21.03■□□□□ 0.96
CPSF1-209ENST00000532725 COMMD8Q9NX08 183 aa21.03■□□□□ 0.96
CPSF1-209ENST00000532725 CNTN6Q9UQ52 1028 aa21.03■□□□□ 0.96
CPSF1-209ENST00000532725 PCDHB4Q9Y5E5 795 aa21.03■□□□□ 0.96
CPSF1-209ENST00000532725 FAM92AA1XBS5 289 aa21.02■□□□□ 0.96
CPSF1-209ENST00000532725 ZNF840PA6NDX5 716 aa21.02■□□□□ 0.96
CPSF1-209ENST00000532725 TMEM221A6NGB7 291 aa21.02■□□□□ 0.96
CPSF1-209ENST00000532725 M0R296 226 aa21.02■□□□□ 0.96
CPSF1-209ENST00000532725 PAEPP09466 180 aa21.02■□□□□ 0.96
CPSF1-209ENST00000532725 VDRP11473 427 aa21.02■□□□□ 0.96
CPSF1-209ENST00000532725 YWHAQP27348 245 aa21.02■□□□□ 0.96
CPSF1-209ENST00000532725 PPP3CCP48454 512 aa21.02■□□□□ 0.96
CPSF1-209ENST00000532725 SLC5A3P53794 718 aa21.02■□□□□ 0.96
CPSF1-209ENST00000532725 APBA1Q02410 837 aa21.02■□□□□ 0.96
CPSF1-209ENST00000532725 KCNMA1Q12791 1236 aa21.02■□□□□ 0.96
CPSF1-209ENST00000532725 ANO6Q4KMQ2 910 aa21.02■□□□□ 0.96
CPSF1-209ENST00000532725 TMEM31Q5JXX7 168 aa21.02■□□□□ 0.96
CPSF1-209ENST00000532725 GJB7Q6PEY0 223 aa21.02■□□□□ 0.96
CPSF1-209ENST00000532725 VITQ6UXI7 678 aa21.02■□□□□ 0.96
CPSF1-209ENST00000532725 ANKRD52Q8NB46 1076 aa21.02■□□□□ 0.96
CPSF1-209ENST00000532725 LRRC3BQ96PB8 259 aa21.02■□□□□ 0.96
CPSF1-209ENST00000532725 HSD3B7Q9H2F3 369 aa21.02■□□□□ 0.96
CPSF1-209ENST00000532725 SIX2Q9NPC8 291 aa21.02■□□□□ 0.96
CPSF1-209ENST00000532725 TRPM5Q9NZQ8 1165 aa21.02■□□□□ 0.96
CPSF1-209ENST00000532725 WNT16Q9UBV4 365 aa21.02■□□□□ 0.96
CPSF1-209ENST00000532725 NCANO14594 1321 aa21.02■□□□□ 0.95
CPSF1-209ENST00000532725 LRRC10BA6NIK2 292 aa21.01■□□□□ 0.95
CPSF1-209ENST00000532725 HEPACAM2A8MVW5 462 aa21.01■□□□□ 0.95
CPSF1-209ENST00000532725 NPR3P17342 541 aa21.01■□□□□ 0.95
CPSF1-209ENST00000532725 PSMC3P17980 439 aa21.01■□□□□ 0.95
CPSF1-209ENST00000532725 ZNF132P52740 706 aa21.01■□□□□ 0.95
CPSF1-209ENST00000532725 KRT31Q15323 416 aa21.01■□□□□ 0.95
CPSF1-209ENST00000532725 SGO2Q562F6 1265 aa21.01■□□□□ 0.95
CPSF1-209ENST00000532725 ENOSF1Q7L5Y1 443 aa21.01■□□□□ 0.95
CPSF1-209ENST00000532725 BMP8AQ7Z5Y6 402 aa21.01■□□□□ 0.95
CPSF1-209ENST00000532725 MFSD6LQ8IWD5 586 aa21.01■□□□□ 0.95
CPSF1-209ENST00000532725 TFAP2BQ92481 460 aa21.01■□□□□ 0.95
CPSF1-209ENST00000532725 CYP2S1Q96SQ9 504 aa21.01■□□□□ 0.95
CPSF1-209ENST00000532725 BPIFA3Q9BQP9 254 aa21.01■□□□□ 0.95
CPSF1-209ENST00000532725 LRFN3Q9BTN0 628 aa21.01■□□□□ 0.95
CPSF1-209ENST00000532725 UBXN6Q9BZV1 441 aa21.01■□□□□ 0.95
CPSF1-209ENST00000532725 NAT10Q9H0A0 1025 aaKnown RBP21.01■□□□□ 0.95
CPSF1-209ENST00000532725 PNPLA8Q9NP80 782 aa21.01■□□□□ 0.95
CPSF1-209ENST00000532725 OBP2AQ9NY56 170 aa21.01■□□□□ 0.95
CPSF1-209ENST00000532725 TAB2Q9NYJ8 693 aa21.01■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms