RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	BIRC5	O15392	142 aa		6.12	□□□□□ -1.43
CD44-231	ENST00000531110	HAUS5	O94927	633 aa		6.12	□□□□□ -1.43
CD44-231	ENST00000531110	ANXA1	P04083	346 aa		6.12	□□□□□ -1.43
CD44-231	ENST00000531110	C1S	P09871	688 aa		6.12	□□□□□ -1.43
CD44-231	ENST00000531110	TROVE2	P10155	538 aa	Known RBP eCLIP	6.12	□□□□□ -1.43
CD44-231	ENST00000531110	HSPA6	P17066	643 aa		6.12	□□□□□ -1.43
CD44-231	ENST00000531110	DES	P17661	470 aa		6.12	□□□□□ -1.43
CD44-231	ENST00000531110	SLC8A1	P32418	973 aa		6.12	□□□□□ -1.43
CD44-231	ENST00000531110	HK3	P52790	923 aa		6.12	□□□□□ -1.43
CD44-231	ENST00000531110	ARPC4	P59998	168 aa		6.12	□□□□□ -1.43
CD44-231	ENST00000531110	TUBA1B	P68363	451 aa		6.12	□□□□□ -1.43
CD44-231	ENST00000531110	SLC25A3	Q00325	362 aa		6.12	□□□□□ -1.43
CD44-231	ENST00000531110	POU5F1B	Q06416	359 aa		6.12	□□□□□ -1.43
CD44-231	ENST00000531110	MAPRE1	Q15691	268 aa	Known RBP	6.12	□□□□□ -1.43
CD44-231	ENST00000531110	INA	Q16352	499 aa		6.12	□□□□□ -1.43
CD44-231	ENST00000531110	SH2D4B	Q5SQS7	431 aa		6.12	□□□□□ -1.43
CD44-231	ENST00000531110	FAM102B	Q5T8I3	360 aa		6.12	□□□□□ -1.43
CD44-231	ENST00000531110	TUBA1A	Q71U36	451 aa		6.12	□□□□□ -1.43
CD44-231	ENST00000531110	YTHDF3	Q7Z739	585 aa	Known RBP	6.12	□□□□□ -1.43
CD44-231	ENST00000531110	TCEAL8	Q8IYN2	117 aa		6.12	□□□□□ -1.43
CD44-231	ENST00000531110	SAMD14	Q8IZD0	417 aa	Predicted RBP	6.12	□□□□□ -1.43
CD44-231	ENST00000531110	RNF169	Q8NCN4	708 aa		6.12	□□□□□ -1.43
CD44-231	ENST00000531110	SVIP	Q8NHG7	77 aa		6.12	□□□□□ -1.43
CD44-231	ENST00000531110	GABPB2	Q8TAK5	448 aa	Predicted RBP	6.12	□□□□□ -1.43
CD44-231	ENST00000531110	SLC25A43	Q8WUT9	341 aa	Predicted RBP	6.12	□□□□□ -1.43
CD44-231	ENST00000531110	KAT6B	Q8WYB5	2073 aa		6.12	□□□□□ -1.43
CD44-231	ENST00000531110	N4BP2L2	Q92802	583 aa	Predicted RBP	6.12	□□□□□ -1.43
CD44-231	ENST00000531110	CUL5	Q93034	780 aa		6.12	□□□□□ -1.43
CD44-231	ENST00000531110	RGMA	Q96B86	450 aa		6.12	□□□□□ -1.43
CD44-231	ENST00000531110	C1GALT1C1	Q96EU7	318 aa		6.12	□□□□□ -1.43
CD44-231	ENST00000531110	RBM41	Q96IZ5	413 aa	Known RBP	6.12	□□□□□ -1.43
CD44-231	ENST00000531110	C8orf76	Q96K31	380 aa		6.12	□□□□□ -1.43
CD44-231	ENST00000531110	CGREF1	Q99674	301 aa		6.12	□□□□□ -1.43
CD44-231	ENST00000531110	NAP1L4	Q99733	375 aa	Known RBP	6.12	□□□□□ -1.43
CD44-231	ENST00000531110	TCHP	Q9BT92	498 aa		6.12	□□□□□ -1.43
CD44-231	ENST00000531110	KRTAP4-7	Q9BYR0	210 aa		6.12	□□□□□ -1.43
CD44-231	ENST00000531110	VPS11	Q9H270	941 aa		6.12	□□□□□ -1.43
CD44-231	ENST00000531110	WDCP	Q9H6R7	721 aa		6.12	□□□□□ -1.43
CD44-231	ENST00000531110	TCF7L2	Q9NQB0	619 aa		6.12	□□□□□ -1.43
CD44-231	ENST00000531110	KIF15	Q9NS87	1388 aa		6.12	□□□□□ -1.43
CD44-231	ENST00000531110	RLIM	Q9NVW2	624 aa		6.12	□□□□□ -1.43
CD44-231	ENST00000531110	MAP3K20	Q9NYL2	800 aa	Known RBP	6.12	□□□□□ -1.43
CD44-231	ENST00000531110	RABL2A	Q9UBK7	228 aa	Predicted RBP	6.12	□□□□□ -1.43
CD44-231	ENST00000531110	CORO1C	Q9ULV4	474 aa	Predicted RBP	6.12	□□□□□ -1.43
CD44-231	ENST00000531110	DAAM1	Q9Y4D1	1078 aa		6.12	□□□□□ -1.43
CD44-231	ENST00000531110	N6AMT1	Q9Y5N5	214 aa		6.12	□□□□□ -1.43
CD44-231	ENST00000531110	NPAT	Q14207	1427 aa		6.11	□□□□□ -1.43
CD44-231	ENST00000531110	MARCH11	A6NNE9	402 aa		6.11	□□□□□ -1.43
CD44-231	ENST00000531110	AHRR	A9YTQ3	701 aa		6.11	□□□□□ -1.43
CD44-231	ENST00000531110	LEFTY2	O00292	366 aa		6.11	□□□□□ -1.43
CD44-231	ENST00000531110	RNASET2	O00584	256 aa	Known RBP	6.11	□□□□□ -1.43
CD44-231	ENST00000531110	POLR3G	O15318	223 aa	Predicted RBP	6.11	□□□□□ -1.43
CD44-231	ENST00000531110	NEMF	O60524	1076 aa		6.11	□□□□□ -1.43
CD44-231	ENST00000531110	DIAPH2	O60879	1101 aa		6.11	□□□□□ -1.43
CD44-231	ENST00000531110	TBCA	O75347	108 aa	Known RBP	6.11	□□□□□ -1.43
CD44-231	ENST00000531110	SCAF4	O95104	1147 aa	Known RBP	6.11	□□□□□ -1.43
CD44-231	ENST00000531110	PNMA6A	P0CW24	399 aa	Predicted RBP	6.11	□□□□□ -1.43
CD44-231	ENST00000531110	CCDC166	P0CW27	439 aa		6.11	□□□□□ -1.43
CD44-231	ENST00000531110	MAL	P21145	153 aa		6.11	□□□□□ -1.43
CD44-231	ENST00000531110	SMARCA1	P28370	1054 aa		6.11	□□□□□ -1.43
CD44-231	ENST00000531110	CSTF2	P33240	577 aa	Known RBP eCLIP	6.11	□□□□□ -1.43
CD44-231	ENST00000531110	CTCF	P49711	727 aa	Predicted RBP	6.11	□□□□□ -1.43
CD44-231	ENST00000531110	MCM2	P49736	904 aa		6.11	□□□□□ -1.43
CD44-231	ENST00000531110	ZNF131	P52739	623 aa		6.11	□□□□□ -1.43
CD44-231	ENST00000531110	CHN2	P52757	468 aa		6.11	□□□□□ -1.43
CD44-231	ENST00000531110	RAP2B	P61225	183 aa		6.11	□□□□□ -1.43
CD44-231	ENST00000531110	NUCB1	Q02818	461 aa		6.11	□□□□□ -1.43
CD44-231	ENST00000531110	DRP2	Q13474	957 aa		6.11	□□□□□ -1.43
CD44-231	ENST00000531110	PUM1	Q14671	1186 aa	Known RBP eCLIP	6.11	□□□□□ -1.43
CD44-231	ENST00000531110	SPCS2	Q15005	226 aa		6.11	□□□□□ -1.43
CD44-231	ENST00000531110	RCN1	Q15293	331 aa		6.11	□□□□□ -1.43
CD44-231	ENST00000531110	ZSCAN23	Q3MJ62	389 aa		6.11	□□□□□ -1.43
CD44-231	ENST00000531110	NAA16	Q6N069	864 aa	Predicted RBP	6.11	□□□□□ -1.43
CD44-231	ENST00000531110	TLDC1	Q6P9B6	456 aa		6.11	□□□□□ -1.43
CD44-231	ENST00000531110	RHOU	Q7L0Q8	258 aa		6.11	□□□□□ -1.43
CD44-231	ENST00000531110	IQCA1	Q86XH1	822 aa		6.11	□□□□□ -1.43
CD44-231	ENST00000531110	GALNT15	Q8N3T1	639 aa		6.11	□□□□□ -1.43
CD44-231	ENST00000531110	ZNF276	Q8N554	614 aa		6.11	□□□□□ -1.43
CD44-231	ENST00000531110	FITM2	Q8N6M3	262 aa		6.11	□□□□□ -1.43
CD44-231	ENST00000531110	EXOC6	Q8TAG9	804 aa		6.11	□□□□□ -1.43
CD44-231	ENST00000531110	CPT1C	Q8TCG5	803 aa		6.11	□□□□□ -1.43
CD44-231	ENST00000531110	NUP133	Q8WUM0	1156 aa		6.11	□□□□□ -1.43
CD44-231	ENST00000531110	RUNDC1	Q96C34	613 aa		6.11	□□□□□ -1.43
CD44-231	ENST00000531110	CCDC114	Q96M63	670 aa		6.11	□□□□□ -1.43
CD44-231	ENST00000531110	FAM193B	Q96PV7	902 aa	Predicted RBP	6.11	□□□□□ -1.43
CD44-231	ENST00000531110	JKAMP	Q9P055	326 aa		6.11	□□□□□ -1.43
CD44-231	ENST00000531110	SEL1L	Q9UBV2	794 aa		6.11	□□□□□ -1.43
CD44-231	ENST00000531110	GGA2	Q9UJY4	613 aa		6.11	□□□□□ -1.43
CD44-231	ENST00000531110	PAIP2B	Q9ULR5	123 aa	Known RBP	6.11	□□□□□ -1.43
CD44-231	ENST00000531110	TMCO1	Q9UM00	188 aa		6.11	□□□□□ -1.43
CD44-231	ENST00000531110	FZD1	Q9UP38	647 aa		6.11	□□□□□ -1.43
CD44-231	ENST00000531110	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	6.11	□□□□□ -1.43
CD44-231	ENST00000531110	GPRASP1	Q5JY77	1395 aa		6.1	□□□□□ -1.43
CD44-231	ENST00000531110	CCDC7	Q96M83	1385 aa		6.1	□□□□□ -1.43
CD44-231	ENST00000531110	NT5C1B-RDH14	C9J2C7	533 aa		6.1	□□□□□ -1.43
CD44-231	ENST00000531110		H3BML4	177 aa		6.1	□□□□□ -1.43
CD44-231	ENST00000531110	WDR46	O15213	610 aa	Known RBP	6.1	□□□□□ -1.43
CD44-231	ENST00000531110	GRM6	O15303	877 aa		6.1	□□□□□ -1.43
CD44-231	ENST00000531110	MGEA5	O60502	916 aa		6.1	□□□□□ -1.43
CD44-231	ENST00000531110	SLC43A1	O75387	559 aa		6.1	□□□□□ -1.43

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