RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 MTAPQ13126 283 aa14.16□□□□□ -0.14
VPS28-211ENST00000530790 FZD5Q13467 585 aa14.16□□□□□ -0.14
VPS28-211ENST00000530790 PPP2R5DQ14738 602 aa14.16□□□□□ -0.14
VPS28-211ENST00000530790 MTF1Q14872 753 aa14.16□□□□□ -0.14
VPS28-211ENST00000530790 C1orf220Q5T0J3 134 aa14.16□□□□□ -0.14
VPS28-211ENST00000530790 FAM35AQ86V20 835 aa14.16□□□□□ -0.14
VPS28-211ENST00000530790 CCDC150Q8NCX0 1101 aa14.16□□□□□ -0.14
VPS28-211ENST00000530790 TTC16Q8NEE8 873 aa14.16□□□□□ -0.14
VPS28-211ENST00000530790 SMARCE1Q969G3 411 aa14.16□□□□□ -0.14
VPS28-211ENST00000530790 SMARCD1Q96GM5 515 aa14.16□□□□□ -0.14
VPS28-211ENST00000530790 SLITRK1Q96PX8 696 aa14.16□□□□□ -0.14
VPS28-211ENST00000530790 GSDMAQ96QA5 445 aa14.16□□□□□ -0.14
VPS28-211ENST00000530790 MED10Q9BTT4 135 aa14.16□□□□□ -0.14
VPS28-211ENST00000530790 TTLL2Q9BWV7 592 aa14.16□□□□□ -0.14
VPS28-211ENST00000530790 B3GNT5Q9BYG0 378 aa14.16□□□□□ -0.14
VPS28-211ENST00000530790 MMRN2Q9H8L6 949 aa14.16□□□□□ -0.14
VPS28-211ENST00000530790 LMAN1LQ9HAT1 526 aa14.16□□□□□ -0.14
VPS28-211ENST00000530790 GKN1Q9NS71 199 aa14.16□□□□□ -0.14
VPS28-211ENST00000530790 TRPM5Q9NZQ8 1165 aa14.16□□□□□ -0.14
VPS28-211ENST00000530790 ZFHX2Q9C0A1 2572 aaPredicted RBP14.16□□□□□ -0.14
VPS28-211ENST00000530790 PTPRDP23468 1912 aa14.15□□□□□ -0.14
VPS28-211ENST00000530790 CLDN5O00501 218 aa14.15□□□□□ -0.14
VPS28-211ENST00000530790 CETN3O15182 167 aa14.15□□□□□ -0.14
VPS28-211ENST00000530790 CHRNB1P11230 501 aa14.15□□□□□ -0.14
VPS28-211ENST00000530790 PFKLP17858 780 aa14.15□□□□□ -0.14
VPS28-211ENST00000530790 ASPAP45381 313 aa14.15□□□□□ -0.14
VPS28-211ENST00000530790 PPP3CCP48454 512 aa14.15□□□□□ -0.14
VPS28-211ENST00000530790 CACNA2D1P54289 1103 aa14.15□□□□□ -0.14
VPS28-211ENST00000530790 PPP3CAQ08209 521 aa14.15□□□□□ -0.14
VPS28-211ENST00000530790 IFRD2Q12894 506 aaPredicted RBP14.15□□□□□ -0.14
VPS28-211ENST00000530790 RUNX3Q13761 415 aa14.15□□□□□ -0.14
VPS28-211ENST00000530790 PDGFRLQ15198 375 aa14.15□□□□□ -0.14
VPS28-211ENST00000530790 ZNF77Q15935 545 aa14.15□□□□□ -0.14
VPS28-211ENST00000530790 ZNF658Q5TYW1 1059 aaPredicted RBP14.15□□□□□ -0.14
VPS28-211ENST00000530790 TRIM68Q6AZZ1 485 aa14.15□□□□□ -0.14
VPS28-211ENST00000530790 SPOPLQ6IQ16 392 aa14.15□□□□□ -0.14
VPS28-211ENST00000530790 TXNDC11Q6PKC3 985 aa14.15□□□□□ -0.14
VPS28-211ENST00000530790 ARL14EPQ8N8R7 260 aaPredicted RBP14.15□□□□□ -0.14
VPS28-211ENST00000530790 ENGASEQ8NFI3 743 aa14.15□□□□□ -0.14
VPS28-211ENST00000530790 RIN3Q8TB24 985 aa14.15□□□□□ -0.14
VPS28-211ENST00000530790 TIGD1Q96MW7 591 aa14.15□□□□□ -0.14
VPS28-211ENST00000530790 SLC22A12Q96S37 553 aa14.15□□□□□ -0.14
VPS28-211ENST00000530790 TSG101Q99816 390 aa14.15□□□□□ -0.14
VPS28-211ENST00000530790 FAM83CQ9BQN1 747 aa14.15□□□□□ -0.14
VPS28-211ENST00000530790 GTPBP4Q9BZE4 634 aaKnown RBP14.15□□□□□ -0.14
VPS28-211ENST00000530790 EBF3Q9H4W6 596 aa14.15□□□□□ -0.14
VPS28-211ENST00000530790 DMAP1Q9NPF5 467 aaPredicted RBP14.15□□□□□ -0.14
VPS28-211ENST00000530790 KRT82Q9NSB4 513 aa14.15□□□□□ -0.14
VPS28-211ENST00000530790 HMGXB4Q9UGU5 601 aa14.15□□□□□ -0.14
VPS28-211ENST00000530790 STX10O60499 249 aa14.14□□□□□ -0.15
VPS28-211ENST00000530790 KINO60870 393 aaKnown RBP14.14□□□□□ -0.15
VPS28-211ENST00000530790 RTN3O95197 1032 aaPredicted RBP14.14□□□□□ -0.15
VPS28-211ENST00000530790 LMNAP02545 664 aaKnown RBP14.14□□□□□ -0.15
VPS28-211ENST00000530790 HDCP19113 662 aa14.14□□□□□ -0.15
VPS28-211ENST00000530790 PRCPP42785 496 aa14.14□□□□□ -0.15
VPS28-211ENST00000530790 IFNAR2P48551 515 aa14.14□□□□□ -0.15
VPS28-211ENST00000530790 CCR3P51677 355 aa14.14□□□□□ -0.15
VPS28-211ENST00000530790 NDST1P52848 882 aa14.14□□□□□ -0.15
VPS28-211ENST00000530790 ORC1Q13415 861 aa14.14□□□□□ -0.15
VPS28-211ENST00000530790 PON2Q15165 354 aa14.14□□□□□ -0.15
VPS28-211ENST00000530790 COBLL1Q53SF7 1204 aa14.14□□□□□ -0.15
VPS28-211ENST00000530790 DGKKQ5KSL6 1271 aa14.14□□□□□ -0.15
VPS28-211ENST00000530790 ACOT1Q86TX2 421 aa14.14□□□□□ -0.15
VPS28-211ENST00000530790 UNC93AQ86WB7 457 aa14.14□□□□□ -0.15
VPS28-211ENST00000530790 CPA6Q8N4T0 437 aa14.14□□□□□ -0.15
VPS28-211ENST00000530790 PDZD8Q8NEN9 1154 aa14.14□□□□□ -0.15
VPS28-211ENST00000530790 TAS1R2Q8TE23 839 aa14.14□□□□□ -0.15
VPS28-211ENST00000530790 SH3RF2Q8TEC5 729 aa14.14□□□□□ -0.15
VPS28-211ENST00000530790 FBXO32Q969P5 355 aa14.14□□□□□ -0.15
VPS28-211ENST00000530790 CYP2S1Q96SQ9 504 aa14.14□□□□□ -0.15
VPS28-211ENST00000530790 NIF3L1Q9GZT8 377 aa14.14□□□□□ -0.15
VPS28-211ENST00000530790 TMEM8AQ9HCN3 771 aa14.14□□□□□ -0.15
VPS28-211ENST00000530790 HPS4Q9NQG7 708 aa14.14□□□□□ -0.15
VPS28-211ENST00000530790 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.14□□□□□ -0.151e-6■■■■■ 30.7
VPS28-211ENST00000530790 TMEM30AQ9NV96 361 aa14.14□□□□□ -0.15
VPS28-211ENST00000530790 GCNT4Q9P109 453 aa14.14□□□□□ -0.15
VPS28-211ENST00000530790 ARHGAP26Q9UNA1 814 aa14.14□□□□□ -0.15
VPS28-211ENST00000530790 PCDHGA2Q9Y5H1 932 aa14.14□□□□□ -0.15
VPS28-211ENST00000530790 PCDHA5Q9Y5H7 936 aa14.14□□□□□ -0.15
VPS28-211ENST00000530790 DENND4CQ5VZ89 1909 aa14.13□□□□□ -0.15
VPS28-211ENST00000530790 ZNF840PA6NDX5 716 aa14.13□□□□□ -0.15
VPS28-211ENST00000530790 SLC16A3O15427 465 aaKnown RBP14.13□□□□□ -0.15
VPS28-211ENST00000530790 AP1G2O75843 785 aa14.13□□□□□ -0.15
VPS28-211ENST00000530790 ABL1P00519 1130 aa14.13□□□□□ -0.15
VPS28-211ENST00000530790 CCDC130P13994 396 aa14.13□□□□□ -0.15
VPS28-211ENST00000530790 ARSAP15289 507 aa14.13□□□□□ -0.15
VPS28-211ENST00000530790 TCF3P15923 654 aa14.13□□□□□ -0.15
VPS28-211ENST00000530790 GTF2H1P32780 548 aa14.13□□□□□ -0.15
VPS28-211ENST00000530790 MXI1P50539 228 aa14.13□□□□□ -0.15
VPS28-211ENST00000530790 SLC5A3P53794 718 aa14.13□□□□□ -0.15
VPS28-211ENST00000530790 AMPD2Q01433 879 aa14.13□□□□□ -0.15
VPS28-211ENST00000530790 INCA1Q0VD86 236 aa14.13□□□□□ -0.15
VPS28-211ENST00000530790 TAF10Q12962 218 aa14.13□□□□□ -0.15
VPS28-211ENST00000530790 KRT39Q6A163 491 aa14.13□□□□□ -0.15
VPS28-211ENST00000530790 TSSK4Q6SA08 328 aa14.13□□□□□ -0.15
VPS28-211ENST00000530790 FUKQ8N0W3 1084 aa14.13□□□□□ -0.15
VPS28-211ENST00000530790 NUP93Q8N1F7 819 aa14.13□□□□□ -0.15
VPS28-211ENST00000530790 SPATA20Q8TB22 786 aa14.13□□□□□ -0.15
VPS28-211ENST00000530790 OSCP1Q8WVF1 389 aa14.13□□□□□ -0.15
VPS28-211ENST00000530790 ATRIPQ8WXE1 791 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms