RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 RASSF3Q86WH2 238 aa11.3□□□□□ -0.6
CPSF1-203ENST00000527916 SYT12Q8IV01 421 aa11.3□□□□□ -0.6
CPSF1-203ENST00000527916 SYCP3Q8IZU3 236 aa11.3□□□□□ -0.6
CPSF1-203ENST00000527916 TMEM130Q8N3G9 435 aa11.3□□□□□ -0.6
CPSF1-203ENST00000527916 GIPC2Q8TF65 315 aa11.3□□□□□ -0.6
CPSF1-203ENST00000527916 C2orf15Q8WU43 125 aaKnown RBP11.3□□□□□ -0.6
CPSF1-203ENST00000527916 CACTINQ8WUQ7 758 aaKnown RBP11.3□□□□□ -0.6
CPSF1-203ENST00000527916 C7orf25Q9BPX7 421 aa11.3□□□□□ -0.6
CPSF1-203ENST00000527916 FAM213AQ9BRX8 229 aa11.3□□□□□ -0.6
CPSF1-203ENST00000527916 TRIM9Q9C026 710 aa11.3□□□□□ -0.6
CPSF1-203ENST00000527916 IKZF4Q9H2S9 585 aa11.3□□□□□ -0.6
CPSF1-203ENST00000527916 ECT2Q9H8V3 914 aa11.3□□□□□ -0.6
CPSF1-203ENST00000527916 DUS2Q9NX74 493 aaKnown RBP11.3□□□□□ -0.6
CPSF1-203ENST00000527916 CELSR3Q9NYQ7 3312 aa11.3□□□□□ -0.6
CPSF1-203ENST00000527916 KPNA7A9QM74 516 aa11.29□□□□□ -0.6
CPSF1-203ENST00000527916 EIF3DO15371 548 aaKnown RBP eCLIP11.29□□□□□ -0.6
CPSF1-203ENST00000527916 ENGP17813 658 aa11.29□□□□□ -0.6
CPSF1-203ENST00000527916 ATF6P18850 670 aa11.29□□□□□ -0.6
CPSF1-203ENST00000527916 BCKDHBP21953 392 aa11.29□□□□□ -0.6
CPSF1-203ENST00000527916 PNPLA4P41247 253 aa11.29□□□□□ -0.6
CPSF1-203ENST00000527916 NLRP12P59046 1061 aa11.29□□□□□ -0.6
CPSF1-203ENST00000527916 SEMA3BQ13214 749 aa11.29□□□□□ -0.6
CPSF1-203ENST00000527916 BYSLQ13895 437 aaKnown RBP11.29□□□□□ -0.6
CPSF1-203ENST00000527916 MTF1Q14872 753 aa11.29□□□□□ -0.6
CPSF1-203ENST00000527916 SPDYCQ5MJ68 293 aa11.29□□□□□ -0.6
CPSF1-203ENST00000527916 MON1AQ86VX9 555 aa11.29□□□□□ -0.6
CPSF1-203ENST00000527916 TTC30AQ86WT1 665 aa11.29□□□□□ -0.6
CPSF1-203ENST00000527916 METTL23Q86XA0 190 aa11.29□□□□□ -0.6
CPSF1-203ENST00000527916 BRSK2Q8IWQ3 736 aa11.29□□□□□ -0.6
CPSF1-203ENST00000527916 EFCAB13Q8IY85 973 aa11.29□□□□□ -0.6
CPSF1-203ENST00000527916 THEM5Q8N1Q8 247 aa11.29□□□□□ -0.6
CPSF1-203ENST00000527916 ZNF507Q8TCN5 953 aa11.29□□□□□ -0.6
CPSF1-203ENST00000527916 SPPL2BQ8TCT7 592 aa11.29□□□□□ -0.6
CPSF1-203ENST00000527916 PYM1Q9BRP8 204 aaKnown RBP11.29□□□□□ -0.6
CPSF1-203ENST00000527916 FGFBP2Q9BYJ0 223 aa11.29□□□□□ -0.6
CPSF1-203ENST00000527916 RBAKQ9NYW8 714 aaPredicted RBP11.29□□□□□ -0.6
CPSF1-203ENST00000527916 RCOR1Q9UKL0 485 aa11.29□□□□□ -0.6
CPSF1-203ENST00000527916 CIZ1Q9ULV3 898 aaPredicted RBP11.29□□□□□ -0.6
CPSF1-203ENST00000527916 DENND4CQ5VZ89 1909 aa11.29□□□□□ -0.6
CPSF1-203ENST00000527916 URB1O60287 2271 aaKnown RBP11.28□□□□□ -0.6
CPSF1-203ENST00000527916 CYB561D2O14569 222 aa11.28□□□□□ -0.6
CPSF1-203ENST00000527916 KALRNO60229 2985 aa11.28□□□□□ -0.6
CPSF1-203ENST00000527916 PRPF6O94906 941 aaKnown RBP11.28□□□□□ -0.6
CPSF1-203ENST00000527916 CFIP05156 583 aa11.28□□□□□ -0.6
CPSF1-203ENST00000527916 HOXD12P35452 270 aa11.28□□□□□ -0.6
CPSF1-203ENST00000527916 SNRPFP62306 86 aaKnown RBP11.28□□□□□ -0.6
CPSF1-203ENST00000527916 EHHADHQ08426 723 aa11.28□□□□□ -0.6
CPSF1-203ENST00000527916 SV2CQ496J9 727 aa11.28□□□□□ -0.6
CPSF1-203ENST00000527916 C2orf27AQ580R0 203 aa11.28□□□□□ -0.6
CPSF1-203ENST00000527916 NAIF1Q69YI7 327 aaPredicted RBP11.28□□□□□ -0.6
CPSF1-203ENST00000527916 TXNDC8Q6A555 127 aa11.28□□□□□ -0.6
CPSF1-203ENST00000527916 SLC23A3Q6PIS1 610 aa11.28□□□□□ -0.6
CPSF1-203ENST00000527916 EPM2AIP1Q7L775 607 aaPredicted RBP11.28□□□□□ -0.6
CPSF1-203ENST00000527916 GPD1LQ8N335 351 aa11.28□□□□□ -0.6
CPSF1-203ENST00000527916 CHCHD4Q8N4Q1 142 aa11.28□□□□□ -0.6
CPSF1-203ENST00000527916 LRRC52Q8N7C0 313 aa11.28□□□□□ -0.6
CPSF1-203ENST00000527916 TTC16Q8NEE8 873 aa11.28□□□□□ -0.6
CPSF1-203ENST00000527916 MDGA1Q8NFP4 955 aa11.28□□□□□ -0.6
CPSF1-203ENST00000527916 OR10T2Q8NGX3 314 aa11.28□□□□□ -0.6
CPSF1-203ENST00000527916 CEP76Q8TAP6 659 aa11.28□□□□□ -0.6
CPSF1-203ENST00000527916 USP33Q8TEY7 942 aa11.28□□□□□ -0.6
CPSF1-203ENST00000527916 OSCP1Q8WVF1 389 aa11.28□□□□□ -0.6
CPSF1-203ENST00000527916 EZH1Q92800 747 aaPredicted RBP11.28□□□□□ -0.6
CPSF1-203ENST00000527916 DHX58Q96C10 678 aa11.28□□□□□ -0.6
CPSF1-203ENST00000527916 ZNF560Q96MR9 790 aa11.28□□□□□ -0.6
CPSF1-203ENST00000527916 ZCWPW1Q9H0M4 648 aa11.28□□□□□ -0.6
CPSF1-203ENST00000527916 KIAA1586Q9HCI6 787 aa11.28□□□□□ -0.6
CPSF1-203ENST00000527916 FAM13BQ9NYF5 915 aa11.28□□□□□ -0.6
CPSF1-203ENST00000527916 UXTQ9UBK9 157 aaPredicted RBP11.28□□□□□ -0.6
CPSF1-203ENST00000527916 ITGA11Q9UKX5 1188 aa11.28□□□□□ -0.6
CPSF1-203ENST00000527916 MMP17Q9ULZ9 603 aa11.28□□□□□ -0.6
CPSF1-203ENST00000527916 PCDHA7Q9UN72 937 aa11.28□□□□□ -0.6
CPSF1-203ENST00000527916 MAST4O15021 2626 aa11.28□□□□□ -0.6
CPSF1-203ENST00000527916 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa11.27□□□□□ -0.61
CPSF1-203ENST00000527916 PVALEFA0A1B0GWK0 134 aa11.27□□□□□ -0.61
CPSF1-203ENST00000527916 ZNF233A6NK53 670 aa11.27□□□□□ -0.61
CPSF1-203ENST00000527916 POLR2DO15514 142 aaKnown RBP11.27□□□□□ -0.61
CPSF1-203ENST00000527916 OPHN1O60890 802 aa11.27□□□□□ -0.61
CPSF1-203ENST00000527916 F11P03951 625 aa11.27□□□□□ -0.61
CPSF1-203ENST00000527916 CAPNS1P04632 268 aa11.27□□□□□ -0.61
CPSF1-203ENST00000527916 CSH1P0DML2 217 aa11.27□□□□□ -0.61
CPSF1-203ENST00000527916 CSH2P0DML3 217 aa11.27□□□□□ -0.61
CPSF1-203ENST00000527916 HAPLN1P10915 354 aaPredicted RBP11.27□□□□□ -0.61
CPSF1-203ENST00000527916 WNT7BP56706 349 aa11.27□□□□□ -0.61
CPSF1-203ENST00000527916 FAM160A1Q05DH4 1040 aa11.27□□□□□ -0.61
CPSF1-203ENST00000527916 GFPT1Q06210 699 aaPredicted RBP11.27□□□□□ -0.61
CPSF1-203ENST00000527916 SCAPQ12770 1279 aa11.27□□□□□ -0.61
CPSF1-203ENST00000527916 SURF1Q15526 300 aa11.27□□□□□ -0.61
CPSF1-203ENST00000527916 CRY1Q16526 586 aa11.27□□□□□ -0.61
CPSF1-203ENST00000527916 COL28A1Q2UY09 1125 aa11.27□□□□□ -0.61
CPSF1-203ENST00000527916 RESP18Q5W5W9 173 aa11.27□□□□□ -0.61
CPSF1-203ENST00000527916 LYSMD4Q5XG99 296 aa11.27□□□□□ -0.61
CPSF1-203ENST00000527916 UNC13DQ70J99 1090 aa11.27□□□□□ -0.61
CPSF1-203ENST00000527916 RABEPKQ7Z6M1 372 aa11.27□□□□□ -0.61
CPSF1-203ENST00000527916 RAB44Q7Z6P3 723 aaPredicted RBP11.27□□□□□ -0.61
CPSF1-203ENST00000527916 TMEM150AQ86TG1 271 aa11.27□□□□□ -0.61
CPSF1-203ENST00000527916 TMEFF1Q8IYR6 380 aa11.27□□□□□ -0.61
CPSF1-203ENST00000527916 C1orf127Q8N9H9 656 aa11.27□□□□□ -0.61
CPSF1-203ENST00000527916 CXorf38Q8TB03 319 aa11.27□□□□□ -0.61
CPSF1-203ENST00000527916 SPATA18Q8TC71 538 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms