RNA–Protein interactions for RNA: ENST00000527046.5

NEDD8-205, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 847 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-205ENST00000527046 PSMG2Q969U7 264 aa11.41□□□□□ -0.58
NEDD8-205ENST00000527046 TCEAL4Q96EI5 215 aa11.41□□□□□ -0.58
NEDD8-205ENST00000527046 MRFAP1L1Q96HT8 127 aa11.41□□□□□ -0.58
NEDD8-205ENST00000527046 SPATA17Q96L03 361 aa11.41□□□□□ -0.58
NEDD8-205ENST00000527046 PCMTD1Q96MG8 357 aaPredicted RBP11.41□□□□□ -0.58
NEDD8-205ENST00000527046 SEPT5Q99719 369 aaPredicted RBP11.41□□□□□ -0.58
NEDD8-205ENST00000527046 UBXN6Q9BZV1 441 aa11.41□□□□□ -0.58
NEDD8-205ENST00000527046 TRIM5Q9C035 493 aa11.41□□□□□ -0.58
NEDD8-205ENST00000527046 SFXN1Q9H9B4 322 aa11.41□□□□□ -0.58
NEDD8-205ENST00000527046 KRT82Q9NSB4 513 aa11.41□□□□□ -0.58
NEDD8-205ENST00000527046 DZANK1Q9NVP4 752 aa11.41□□□□□ -0.58
NEDD8-205ENST00000527046 CD207Q9UJ71 328 aa11.41□□□□□ -0.58
NEDD8-205ENST00000527046 MYO6Q9UM54 1294 aa11.41□□□□□ -0.58
NEDD8-205ENST00000527046 PCDHGC3Q9UN70 934 aa11.41□□□□□ -0.58
NEDD8-205ENST00000527046 MYH10P35580 1976 aa11.41□□□□□ -0.58
NEDD8-205ENST00000527046 ANAPC1Q9H1A4 1944 aa11.41□□□□□ -0.58
NEDD8-205ENST00000527046 OBSL1O75147 1896 aa11.4□□□□□ -0.58
NEDD8-205ENST00000527046 DENND4AQ7Z401 1863 aa11.4□□□□□ -0.58
NEDD8-205ENST00000527046 SLC38A8A6NNN8 435 aa11.4□□□□□ -0.58
NEDD8-205ENST00000527046 CBFA2T2O43439 604 aa11.4□□□□□ -0.58
NEDD8-205ENST00000527046 TADA3O75528 432 aa11.4□□□□□ -0.58
NEDD8-205ENST00000527046 AP1G2O75843 785 aa11.4□□□□□ -0.58
NEDD8-205ENST00000527046 CD19P15391 556 aa11.4□□□□□ -0.58
NEDD8-205ENST00000527046 NPR3P17342 541 aa11.4□□□□□ -0.58
NEDD8-205ENST00000527046 PTPN2P17706 415 aa11.4□□□□□ -0.58
NEDD8-205ENST00000527046 GNA15P30679 374 aa11.4□□□□□ -0.58
NEDD8-205ENST00000527046 HNRNPH3P31942 346 aaKnown RBP11.4□□□□□ -0.58
NEDD8-205ENST00000527046 CDH5P33151 784 aaPredicted RBP11.4□□□□□ -0.58
NEDD8-205ENST00000527046 GRIK1P39086 918 aa11.4□□□□□ -0.58
NEDD8-205ENST00000527046 FMO1Q01740 532 aa11.4□□□□□ -0.58
NEDD8-205ENST00000527046 ITIH3Q06033 890 aa11.4□□□□□ -0.58
NEDD8-205ENST00000527046 SPECC1LQ69YQ0 1117 aa11.4□□□□□ -0.58
NEDD8-205ENST00000527046 GRASPQ7Z6J2 395 aaPredicted RBP11.4□□□□□ -0.58
NEDD8-205ENST00000527046 PIGZQ86VD9 579 aa11.4□□□□□ -0.58
NEDD8-205ENST00000527046 SCN4BQ8IWT1 228 aa11.4□□□□□ -0.58
NEDD8-205ENST00000527046 CPLX3Q8WVH0 158 aa11.4□□□□□ -0.58
NEDD8-205ENST00000527046 SECISBP2LQ93073 1101 aaKnown RBP11.4□□□□□ -0.58
NEDD8-205ENST00000527046 SMARCD1Q96GM5 515 aa11.4□□□□□ -0.58
NEDD8-205ENST00000527046 NUP58Q9BVL2 599 aa11.4□□□□□ -0.58
NEDD8-205ENST00000527046 TTLL2Q9BWV7 592 aa11.4□□□□□ -0.58
NEDD8-205ENST00000527046 WDR6Q9NNW5 1121 aaKnown RBP11.4□□□□□ -0.58
NEDD8-205ENST00000527046 AVENQ9NQS1 362 aaPredicted RBP11.4□□□□□ -0.58
NEDD8-205ENST00000527046 TJP2Q9UDY2 1190 aa11.4□□□□□ -0.58
NEDD8-205ENST00000527046 COG5Q9UP83 839 aa11.4□□□□□ -0.58
NEDD8-205ENST00000527046 USP15Q9Y4E8 981 aaPredicted RBP11.4□□□□□ -0.58
NEDD8-205ENST00000527046 USP3Q9Y6I4 520 aa11.4□□□□□ -0.58
NEDD8-205ENST00000527046 DOCK8Q8NF50 2099 aa11.39□□□□□ -0.59
NEDD8-205ENST00000527046 THAP12O43422 761 aa11.39□□□□□ -0.59
NEDD8-205ENST00000527046 CYP1A1P04798 512 aaPredicted RBP11.39□□□□□ -0.59
NEDD8-205ENST00000527046 RHOP08100 348 aa11.39□□□□□ -0.59
NEDD8-205ENST00000527046 MMEP08473 750 aa11.39□□□□□ -0.59
NEDD8-205ENST00000527046 ZDHHC11BP0C7U3 371 aa11.39□□□□□ -0.59
NEDD8-205ENST00000527046 FAM200BP0CF97 657 aa11.39□□□□□ -0.59
NEDD8-205ENST00000527046 SKILP12757 684 aa11.39□□□□□ -0.59
NEDD8-205ENST00000527046 BMP1P13497 986 aa11.39□□□□□ -0.59
NEDD8-205ENST00000527046 GJA1P17302 382 aa11.39□□□□□ -0.59
NEDD8-205ENST00000527046 TRIM21P19474 475 aaKnown RBP11.39□□□□□ -0.59
NEDD8-205ENST00000527046 PRKCIP41743 596 aa11.39□□□□□ -0.59
NEDD8-205ENST00000527046 PLA2G4AP47712 749 aa11.39□□□□□ -0.59
NEDD8-205ENST00000527046 KCNQ1P51787 676 aa11.39□□□□□ -0.59
NEDD8-205ENST00000527046 KIF11P52732 1056 aa11.39□□□□□ -0.59
NEDD8-205ENST00000527046 EPHB3P54753 998 aa11.39□□□□□ -0.59
NEDD8-205ENST00000527046 RPL10AP62906 217 aaKnown RBP11.39□□□□□ -0.59
NEDD8-205ENST00000527046 ZBED6P86452 979 aa11.39□□□□□ -0.59
NEDD8-205ENST00000527046 PLCB2Q00722 1185 aa11.39□□□□□ -0.59
NEDD8-205ENST00000527046 PTK2Q05397 1052 aa11.39□□□□□ -0.59
NEDD8-205ENST00000527046 MEA1Q16626 185 aa11.39□□□□□ -0.59
NEDD8-205ENST00000527046 LIN9Q5TKA1 542 aa11.39□□□□□ -0.59
NEDD8-205ENST00000527046 CYP26C1Q6V0L0 522 aa11.39□□□□□ -0.59
NEDD8-205ENST00000527046 EP400NLQ6ZTU2 488 aa11.39□□□□□ -0.59
NEDD8-205ENST00000527046 SLC30A5Q8TAD4 765 aa11.39□□□□□ -0.59
NEDD8-205ENST00000527046 ITFG1Q8TB96 612 aa11.39□□□□□ -0.59
NEDD8-205ENST00000527046 KCTD13Q8WZ19 329 aa11.39□□□□□ -0.59
NEDD8-205ENST00000527046 SMG7Q92540 1137 aaKnown RBP11.39□□□□□ -0.59
NEDD8-205ENST00000527046 KHSRPQ92945 711 aaKnown RBP eCLIP11.39□□□□□ -0.594e-7■■□□□ 13.3
NEDD8-205ENST00000527046 CEP295NLQ96MC4 621 aa11.39□□□□□ -0.59
NEDD8-205ENST00000527046 MED10Q9BTT4 135 aa11.39□□□□□ -0.59
NEDD8-205ENST00000527046 SLC4A5Q9BY07 1137 aa11.39□□□□□ -0.59
NEDD8-205ENST00000527046 LHX5Q9H2C1 402 aa11.39□□□□□ -0.59
NEDD8-205ENST00000527046 POMKQ9H5K3 350 aa11.39□□□□□ -0.59
NEDD8-205ENST00000527046 DMAP1Q9NPF5 467 aaPredicted RBP11.39□□□□□ -0.59
NEDD8-205ENST00000527046 DPP7Q9UHL4 492 aa11.39□□□□□ -0.59
NEDD8-205ENST00000527046 ASB3Q9Y575 518 aa11.39□□□□□ -0.59
NEDD8-205ENST00000527046 XPO1O14980 1071 aaKnown RBP11.38□□□□□ -0.59
NEDD8-205ENST00000527046 TRIM66O15016 1216 aa11.38□□□□□ -0.59
NEDD8-205ENST00000527046 ADCY5O95622 1261 aa11.38□□□□□ -0.59
NEDD8-205ENST00000527046 LRG1P02750 347 aa11.38□□□□□ -0.59
NEDD8-205ENST00000527046 PLEKP08567 350 aaPredicted RBP11.38□□□□□ -0.59
NEDD8-205ENST00000527046 UNGP13051 313 aaPredicted RBP11.38□□□□□ -0.59
NEDD8-205ENST00000527046 IL9P15248 144 aa11.38□□□□□ -0.59
NEDD8-205ENST00000527046 ALDH1A3P47895 512 aa11.38□□□□□ -0.59
NEDD8-205ENST00000527046 SLC5A3P53794 718 aa11.38□□□□□ -0.59
NEDD8-205ENST00000527046 BPIFB4P59827 614 aa11.38□□□□□ -0.59
NEDD8-205ENST00000527046 CDR2Q01850 454 aa11.38□□□□□ -0.59
NEDD8-205ENST00000527046 SMAD4Q13485 552 aaKnown RBP11.38□□□□□ -0.59
NEDD8-205ENST00000527046 STILQ15468 1287 aa11.38□□□□□ -0.59
NEDD8-205ENST00000527046 SKIV2LQ15477 1246 aaKnown RBP11.38□□□□□ -0.59
NEDD8-205ENST00000527046 SMAD2Q15796 467 aaKnown RBP11.38□□□□□ -0.59
NEDD8-205ENST00000527046 TAF3Q5VWG9 929 aa11.38□□□□□ -0.59
NEDD8-205ENST00000527046 PM20D1Q6GTS8 502 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms