RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 CARNS1A5YM72 827 aa19.89■□□□□ 0.77
VPS28-207ENST00000526977 I3L4J1 428 aa19.89■□□□□ 0.77
VPS28-207ENST00000526977 PROSCO94903 275 aa19.89■□□□□ 0.77
VPS28-207ENST00000526977 OAS2P29728 719 aaKnown RBP19.89■□□□□ 0.77
VPS28-207ENST00000526977 SLC11A1P49279 550 aa19.89■□□□□ 0.77
VPS28-207ENST00000526977 ALDH7A1P49419 539 aaKnown RBP19.89■□□□□ 0.77
VPS28-207ENST00000526977 PPP2R5EQ16537 467 aa19.89■□□□□ 0.77
VPS28-207ENST00000526977 ZDHHC14Q8IZN3 488 aa19.89■□□□□ 0.77
VPS28-207ENST00000526977 THEM5Q8N1Q8 247 aa19.89■□□□□ 0.77
VPS28-207ENST00000526977 B3GALNT2Q8NCR0 500 aa19.89■□□□□ 0.77
VPS28-207ENST00000526977 CAVIN3Q969G5 261 aa19.89■□□□□ 0.77
VPS28-207ENST00000526977 DPEP3Q9H4B8 488 aa19.89■□□□□ 0.77
VPS28-207ENST00000526977 CDH9Q9ULB4 789 aa19.89■□□□□ 0.77
VPS28-207ENST00000526977 SCINQ9Y6U3 715 aa19.89■□□□□ 0.77
VPS28-207ENST00000526977 ALPK3Q96L96 1907 aa19.88■□□□□ 0.77
VPS28-207ENST00000526977 F8W810 466 aa19.88■□□□□ 0.77
VPS28-207ENST00000526977 PTPN1P18031 435 aaKnown RBP19.88■□□□□ 0.77
VPS28-207ENST00000526977 ELAVL2Q12926 359 aaKnown RBP19.88■□□□□ 0.77
VPS28-207ENST00000526977 GPS2Q13227 327 aa19.88■□□□□ 0.77
VPS28-207ENST00000526977 PPP1R26Q5T8A7 1209 aaPredicted RBP19.88■□□□□ 0.77
VPS28-207ENST00000526977 SEL1L2Q5TEA6 688 aa19.88■□□□□ 0.77
VPS28-207ENST00000526977 DENND1BQ6P3S1 775 aa19.88■□□□□ 0.77
VPS28-207ENST00000526977 CMTR2Q8IYT2 770 aaKnown RBP19.88■□□□□ 0.77
VPS28-207ENST00000526977 FEZF2Q8TBJ5 459 aa19.88■□□□□ 0.77
VPS28-207ENST00000526977 ACBD6Q9BR61 282 aa19.88■□□□□ 0.77
VPS28-207ENST00000526977 TSPAN16Q9UKR8 245 aa19.88■□□□□ 0.77
VPS28-207ENST00000526977 GOLGA6L10A0A0M3HER8 536 aa19.88■□□□□ 0.77
VPS28-207ENST00000526977 ZBBXA8MT70 800 aa19.88■□□□□ 0.77
VPS28-207ENST00000526977 SYN3O14994 580 aa19.88■□□□□ 0.77
VPS28-207ENST00000526977 TTI1O43156 1089 aa19.88■□□□□ 0.77
VPS28-207ENST00000526977 MICAL2O94851 1124 aa19.88■□□□□ 0.77
VPS28-207ENST00000526977 GJB6O95452 261 aa19.88■□□□□ 0.77
VPS28-207ENST00000526977 CALB1P05937 261 aa19.88■□□□□ 0.77
VPS28-207ENST00000526977 FAM153BP0C7A2 387 aa19.88■□□□□ 0.77
VPS28-207ENST00000526977 BCAR1P56945 870 aa19.88■□□□□ 0.77
VPS28-207ENST00000526977 GABPB1Q06547 395 aaPredicted RBP19.88■□□□□ 0.77
VPS28-207ENST00000526977 FAM153CQ494X1 144 aa19.88■□□□□ 0.77
VPS28-207ENST00000526977 GLIPR1L2Q4G1C9 344 aa19.88■□□□□ 0.77
VPS28-207ENST00000526977 TMEM240Q5SV17 173 aa19.88■□□□□ 0.77
VPS28-207ENST00000526977 OVOS1Q6IE37 1185 aa19.88■□□□□ 0.77
VPS28-207ENST00000526977 SLC13A5Q86YT5 568 aaPredicted RBP19.88■□□□□ 0.77
VPS28-207ENST00000526977 PRELID2Q8N945 189 aa19.88■□□□□ 0.77
VPS28-207ENST00000526977 EIF1ADQ8N9N8 165 aaKnown RBP19.88■□□□□ 0.77
VPS28-207ENST00000526977 CWH43Q9H720 699 aa19.88■□□□□ 0.77
VPS28-207ENST00000526977 RC3H2Q9HBD1 1191 aaKnown RBP19.88■□□□□ 0.77
VPS28-207ENST00000526977 HESX1Q9UBX0 185 aa19.88■□□□□ 0.77
VPS28-207ENST00000526977 FAM153AQ9UHL3 310 aa19.88■□□□□ 0.77
VPS28-207ENST00000526977 FNDC1Q4ZHG4 1894 aaPredicted RBP19.87■□□□□ 0.77
VPS28-207ENST00000526977 TCRBV5S1A1TA0A578 114 aa19.87■□□□□ 0.77
VPS28-207ENST00000526977 HCRTO43612 131 aa19.87■□□□□ 0.77
VPS28-207ENST00000526977 YWHAHQ04917 246 aaPredicted RBP19.87■□□□□ 0.77
VPS28-207ENST00000526977 KCTD19Q17RG1 926 aaPredicted RBP19.87■□□□□ 0.77
VPS28-207ENST00000526977 DPF3Q92784 378 aa19.87■□□□□ 0.77
VPS28-207ENST00000526977 LBHD1Q9BQE6 289 aaPredicted RBP19.87■□□□□ 0.77
VPS28-207ENST00000526977 ACBD3Q9H3P7 528 aa19.87■□□□□ 0.77
VPS28-207ENST00000526977 SF3B1O75533 1304 aaKnown RBP eCLIP19.87■□□□□ 0.773e-6■■■■■ 56
VPS28-207ENST00000526977 TCRBV7S2A1N4TA0A589 114 aa19.86■□□□□ 0.77
VPS28-207ENST00000526977 TMEM191CA6NGB0 347 aa19.86■□□□□ 0.77
VPS28-207ENST00000526977 M0QYV0 167 aa19.86■□□□□ 0.77
VPS28-207ENST00000526977 POLR3GO15318 223 aaPredicted RBP19.86■□□□□ 0.77
VPS28-207ENST00000526977 CAPN15O75808 1086 aa19.86■□□□□ 0.77
VPS28-207ENST00000526977 SYN1P17600 705 aa19.86■□□□□ 0.77
VPS28-207ENST00000526977 GPD2P43304 727 aa19.86■□□□□ 0.77
VPS28-207ENST00000526977 RPL7AP62424 266 aaKnown RBP19.86■□□□□ 0.77
VPS28-207ENST00000526977 NNTQ13423 1086 aa19.86■□□□□ 0.77
VPS28-207ENST00000526977 COL13A1Q5TAT6 717 aaPredicted RBP19.86■□□□□ 0.77
VPS28-207ENST00000526977 FAM117BQ6P1L5 589 aa19.86■□□□□ 0.77
VPS28-207ENST00000526977 ERICH1Q86X53 443 aa19.86■□□□□ 0.77
VPS28-207ENST00000526977 DDX42Q86XP3 938 aaKnown RBP eCLIP19.86■□□□□ 0.77
VPS28-207ENST00000526977 SYT15Q9BQS2 421 aa19.86■□□□□ 0.77
VPS28-207ENST00000526977 FAM49BQ9NUQ9 324 aa19.86■□□□□ 0.77
VPS28-207ENST00000526977 MARCH5Q9NX47 278 aa19.86■□□□□ 0.77
VPS28-207ENST00000526977 OAZ2O95190 189 aa19.86■□□□□ 0.77
VPS28-207ENST00000526977 ACAT1P24752 427 aaKnown RBP19.86■□□□□ 0.77
VPS28-207ENST00000526977 BTG3Q14201 252 aaPredicted RBP19.86■□□□□ 0.77
VPS28-207ENST00000526977 DAB2IPQ5VWQ8 1189 aa19.86■□□□□ 0.77
VPS28-207ENST00000526977 ANKRD52Q8NB46 1076 aa19.86■□□□□ 0.77
VPS28-207ENST00000526977 SEC14L1Q92503 715 aa19.86■□□□□ 0.77
VPS28-207ENST00000526977 YME1L1Q96TA2 773 aa19.86■□□□□ 0.77
VPS28-207ENST00000526977 HNRNPABQ99729 332 aaKnown RBP19.86■□□□□ 0.77
VPS28-207ENST00000526977 HCSTQ9UBK5 93 aa19.86■□□□□ 0.77
VPS28-207ENST00000526977 CUL1Q13616 776 aa19.85■□□□□ 0.77
VPS28-207ENST00000526977 GOLGA7BQ2TAP0 167 aa19.85■□□□□ 0.77
VPS28-207ENST00000526977 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP19.85■□□□□ 0.77
VPS28-207ENST00000526977 HERVK_113Q902F9 699 aa19.85■□□□□ 0.77
VPS28-207ENST00000526977 CYTH4Q9UIA0 394 aa19.85■□□□□ 0.77
VPS28-207ENST00000526977 FSCN2O14926 492 aa19.85■□□□□ 0.77
VPS28-207ENST00000526977 PHF2O75151 1096 aa19.85■□□□□ 0.77
VPS28-207ENST00000526977 ATP2C2O75185 946 aa19.85■□□□□ 0.77
VPS28-207ENST00000526977 GJB5O95377 273 aa19.85■□□□□ 0.77
VPS28-207ENST00000526977 SETSIPP0DME0 302 aa19.85■□□□□ 0.77
VPS28-207ENST00000526977 RARAP10276 462 aa19.85■□□□□ 0.77
VPS28-207ENST00000526977 ECHS1P30084 290 aa19.85■□□□□ 0.77
VPS28-207ENST00000526977 TAS2R40P59535 323 aa19.85■□□□□ 0.77
VPS28-207ENST00000526977 PSMC1P62191 440 aaKnown RBP19.85■□□□□ 0.77
VPS28-207ENST00000526977 DR1Q01658 176 aa19.85■□□□□ 0.77
VPS28-207ENST00000526977 SIX1Q15475 284 aaPredicted RBP19.85■□□□□ 0.77
VPS28-207ENST00000526977 MAPRE1Q15691 268 aaKnown RBP19.85■□□□□ 0.77
VPS28-207ENST00000526977 PKDCCQ504Y2 493 aa19.85■□□□□ 0.77
VPS28-207ENST00000526977 SPOUT1Q5T280 376 aaKnown RBP19.85■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms