RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 RALGPS2Q86X27 583 aaPredicted RBP21.91■■□□□ 1.1
VPS28-206ENST00000526734 PDZD8Q8NEN9 1154 aa21.91■■□□□ 1.1
VPS28-206ENST00000526734 OVCA2Q8WZ82 227 aa21.91■■□□□ 1.1
VPS28-206ENST00000526734 ERCC4Q92889 916 aaPredicted RBP21.91■■□□□ 1.1
VPS28-206ENST00000526734 USP13Q92995 863 aaPredicted RBP21.91■■□□□ 1.1
VPS28-206ENST00000526734 CEP63Q96MT8 703 aa21.91■■□□□ 1.1
VPS28-206ENST00000526734 SLITRK1Q96PX8 696 aa21.91■■□□□ 1.1
VPS28-206ENST00000526734 MED10Q9BTT4 135 aa21.91■■□□□ 1.1
VPS28-206ENST00000526734 COMMD8Q9NX08 183 aa21.91■■□□□ 1.1
VPS28-206ENST00000526734 ARMCX3Q9UH62 379 aaPredicted RBP21.91■■□□□ 1.1
VPS28-206ENST00000526734 BICDL2A1A5D9 508 aa21.9■■□□□ 1.1
VPS28-206ENST00000526734 PROB1E7EW31 1015 aa21.9■■□□□ 1.1
VPS28-206ENST00000526734 GADD45BO75293 160 aaPredicted RBP21.9■■□□□ 1.1
VPS28-206ENST00000526734 CKMP06732 381 aa21.9■■□□□ 1.1
VPS28-206ENST00000526734 TCF3P15923 654 aa21.9■■□□□ 1.1
VPS28-206ENST00000526734 NBL1P41271 181 aa21.9■■□□□ 1.1
VPS28-206ENST00000526734 SPOPLQ6IQ16 392 aa21.9■■□□□ 1.1
VPS28-206ENST00000526734 CC2D1AQ6P1N0 951 aaPredicted RBP21.9■■□□□ 1.1
VPS28-206ENST00000526734 ACOT1Q86TX2 421 aa21.9■■□□□ 1.1
VPS28-206ENST00000526734 C1orf210Q8IVY1 113 aa21.9■■□□□ 1.1
VPS28-206ENST00000526734 NUP93Q8N1F7 819 aa21.9■■□□□ 1.1
VPS28-206ENST00000526734 KIAA1958Q8N8K9 716 aa21.9■■□□□ 1.1
VPS28-206ENST00000526734 TRIML1Q8N9V2 468 aa21.9■■□□□ 1.1
VPS28-206ENST00000526734 LRRC3BQ96PB8 259 aa21.9■■□□□ 1.1
VPS28-206ENST00000526734 MMRN2Q9H8L6 949 aa21.9■■□□□ 1.1
VPS28-206ENST00000526734 TRPC7Q9HCX4 862 aa21.9■■□□□ 1.1
VPS28-206ENST00000526734 PTPRDP23468 1912 aa21.9■■□□□ 1.1
VPS28-206ENST00000526734 SHISA7A6NL88 538 aa21.89■■□□□ 1.09
VPS28-206ENST00000526734 CLDN5O00501 218 aa21.89■■□□□ 1.09
VPS28-206ENST00000526734 CD72P21854 359 aa21.89■■□□□ 1.09
VPS28-206ENST00000526734 MRE11P49959 708 aa21.89■■□□□ 1.09
VPS28-206ENST00000526734 USP4Q13107 963 aa21.89■■□□□ 1.09
VPS28-206ENST00000526734 MORC3Q14149 939 aa21.89■■□□□ 1.09
VPS28-206ENST00000526734 PDGFRLQ15198 375 aa21.89■■□□□ 1.09
VPS28-206ENST00000526734 ITPRIPL2Q3MIP1 535 aa21.89■■□□□ 1.09
VPS28-206ENST00000526734 DCAF17Q5H9S7 520 aaPredicted RBP21.89■■□□□ 1.09
VPS28-206ENST00000526734 WDR44Q5JSH3 913 aa21.89■■□□□ 1.09
VPS28-206ENST00000526734 TCERG1LQ5VWI1 586 aa21.89■■□□□ 1.09
VPS28-206ENST00000526734 NT5C1AQ9BXI3 368 aa21.89■■□□□ 1.09
VPS28-206ENST00000526734 SMG9Q9H0W8 520 aaKnown RBP21.89■■□□□ 1.09
VPS28-206ENST00000526734 APOBEC3GQ9HC16 384 aaKnown RBP21.89■■□□□ 1.09
VPS28-206ENST00000526734 RAB20Q9NX57 234 aa21.89■■□□□ 1.09
VPS28-206ENST00000526734 GCNT4Q9P109 453 aa21.89■■□□□ 1.09
VPS28-206ENST00000526734 MTF2Q9Y483 593 aaPredicted RBP21.89■■□□□ 1.09
VPS28-206ENST00000526734 PMS1P54277 932 aaKnown RBP21.88■■□□□ 1.09
VPS28-206ENST00000526734 USP46P62068 366 aa21.88■■□□□ 1.09
VPS28-206ENST00000526734 AMPD2Q01433 879 aa21.88■■□□□ 1.09
VPS28-206ENST00000526734 LRRC32Q14392 662 aa21.88■■□□□ 1.09
VPS28-206ENST00000526734 FRMD5Q7Z6J6 570 aa21.88■■□□□ 1.09
VPS28-206ENST00000526734 FILIP1Q7Z7B0 1213 aa21.88■■□□□ 1.09
VPS28-206ENST00000526734 FUKQ8N0W3 1084 aa21.88■■□□□ 1.09
VPS28-206ENST00000526734 EEF2KMTQ96G04 330 aa21.88■■□□□ 1.09
VPS28-206ENST00000526734 FAM83CQ9BQN1 747 aa21.88■■□□□ 1.09
VPS28-206ENST00000526734 KRT82Q9NSB4 513 aa21.88■■□□□ 1.09
VPS28-206ENST00000526734 FBXO4Q9UKT5 387 aa21.88■■□□□ 1.09
VPS28-206ENST00000526734 ARHGAP26Q9UNA1 814 aa21.88■■□□□ 1.09
VPS28-206ENST00000526734 CCL26Q9Y258 94 aa21.88■■□□□ 1.09
VPS28-206ENST00000526734 COQ4Q9Y3A0 265 aa21.88■■□□□ 1.09
VPS28-206ENST00000526734 MIA3Q5JRA6 1907 aa21.87■■□□□ 1.09
VPS28-206ENST00000526734 DENND4CQ5VZ89 1909 aa21.87■■□□□ 1.09
VPS28-206ENST00000526734 TRIM49BA6NDI0 452 aa21.87■■□□□ 1.09
VPS28-206ENST00000526734 ZNF840PA6NDX5 716 aa21.87■■□□□ 1.09
VPS28-206ENST00000526734 SPECC1L-ADORA2AF8WAN1 911 aa21.87■■□□□ 1.09
VPS28-206ENST00000526734 LAMTOR5O43504 91 aa21.87■■□□□ 1.09
VPS28-206ENST00000526734 LRRN2O75325 713 aa21.87■■□□□ 1.09
VPS28-206ENST00000526734 CILPO75339 1184 aa21.87■■□□□ 1.09
VPS28-206ENST00000526734 AP1G2O75843 785 aa21.87■■□□□ 1.09
VPS28-206ENST00000526734 HDCP19113 662 aa21.87■■□□□ 1.09
VPS28-206ENST00000526734 YWHAQP27348 245 aa21.87■■□□□ 1.09
VPS28-206ENST00000526734 CTHP32929 405 aa21.87■■□□□ 1.09
VPS28-206ENST00000526734 CACNA2D1P54289 1103 aa21.87■■□□□ 1.09
VPS28-206ENST00000526734 MTF1Q14872 753 aa21.87■■□□□ 1.09
VPS28-206ENST00000526734 PAQR9Q6ZVX9 377 aa21.87■■□□□ 1.09
VPS28-206ENST00000526734 ALYREFQ86V81 257 aaKnown RBP21.87■■□□□ 1.09
VPS28-206ENST00000526734 GPIHBP1Q8IV16 184 aa21.87■■□□□ 1.09
VPS28-206ENST00000526734 ZNF687Q8N1G0 1237 aa21.87■■□□□ 1.09
VPS28-206ENST00000526734 ELMO3Q96BJ8 720 aa21.87■■□□□ 1.09
VPS28-206ENST00000526734 HNRNPABQ99729 332 aaKnown RBP21.87■■□□□ 1.09
VPS28-206ENST00000526734 CHRDQ9H2X0 955 aa21.87■■□□□ 1.09
VPS28-206ENST00000526734 CSNK1G1Q9HCP0 422 aa21.87■■□□□ 1.09
VPS28-206ENST00000526734 GKN1Q9NS71 199 aa21.87■■□□□ 1.09
VPS28-206ENST00000526734 TMEM30AQ9NV96 361 aa21.87■■□□□ 1.09
VPS28-206ENST00000526734 FAM86C1Q9NVL1 165 aa21.87■■□□□ 1.09
VPS28-206ENST00000526734 SPATA6Q9NWH7 488 aaPredicted RBP21.87■■□□□ 1.09
VPS28-206ENST00000526734 HMGXB4Q9UGU5 601 aa21.87■■□□□ 1.09
VPS28-206ENST00000526734 NDRG2Q9UN36 371 aaKnown RBP21.87■■□□□ 1.09
VPS28-206ENST00000526734 OBSL1O75147 1896 aa21.87■■□□□ 1.09
VPS28-206ENST00000526734 FAM200BP0CF97 657 aa21.86■■□□□ 1.09
VPS28-206ENST00000526734 TAF10Q12962 218 aa21.86■■□□□ 1.09
VPS28-206ENST00000526734 ZNF77Q15935 545 aa21.86■■□□□ 1.09
VPS28-206ENST00000526734 ZNF528Q3MIS6 628 aa21.86■■□□□ 1.09
VPS28-206ENST00000526734 ZC3H14Q6PJT7 736 aaKnown RBP21.86■■□□□ 1.09
VPS28-206ENST00000526734 MAMSTRQ6ZN01 415 aa21.86■■□□□ 1.09
VPS28-206ENST00000526734 ARL14EPQ8N8R7 260 aaPredicted RBP21.86■■□□□ 1.09
VPS28-206ENST00000526734 SLC2A14Q8TDB8 520 aa21.86■■□□□ 1.09
VPS28-206ENST00000526734 SLC35C1Q96A29 364 aa21.86■■□□□ 1.09
VPS28-206ENST00000526734 EXOC4Q96A65 974 aa21.86■■□□□ 1.09
VPS28-206ENST00000526734 ZFYVE19Q96K21 471 aa21.86■■□□□ 1.09
VPS28-206ENST00000526734 SEMA4AQ9H3S1 761 aa21.86■■□□□ 1.09
VPS28-206ENST00000526734 PNPLA8Q9NP80 782 aa21.86■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms