RNA–Protein interactions for RNA: ENST00000526430.1

NEDD8-204, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 3

Gene NEDD8, Length 286 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-204ENST00000526430 FOXR2Q6PJQ5 311 aa11.74□□□□□ -0.53
NEDD8-204ENST00000526430 CYP2U1Q7Z449 544 aa11.74□□□□□ -0.53
NEDD8-204ENST00000526430 IRF2BP1Q8IU81 584 aa11.74□□□□□ -0.53
NEDD8-204ENST00000526430 HS6ST3Q8IZP7 471 aa11.74□□□□□ -0.53
NEDD8-204ENST00000526430 GPD1LQ8N335 351 aa11.74□□□□□ -0.53
NEDD8-204ENST00000526430 CXorf38Q8TB03 319 aa11.74□□□□□ -0.53
NEDD8-204ENST00000526430 SHKBP1Q8TBC3 707 aa11.74□□□□□ -0.53
NEDD8-204ENST00000526430 ZNF516Q92618 1163 aa11.74□□□□□ -0.53
NEDD8-204ENST00000526430 EEF2KMTQ96G04 330 aa11.74□□□□□ -0.53
NEDD8-204ENST00000526430 ACAP3Q96P50 834 aa11.74□□□□□ -0.53
NEDD8-204ENST00000526430 FAM213AQ9BRX8 229 aa11.74□□□□□ -0.53
NEDD8-204ENST00000526430 SLITRK6Q9H5Y7 841 aa11.74□□□□□ -0.53
NEDD8-204ENST00000526430 CYP4F11Q9HBI6 524 aa11.74□□□□□ -0.53
NEDD8-204ENST00000526430 CEP72Q9P209 647 aa11.74□□□□□ -0.53
NEDD8-204ENST00000526430 CNTN3Q9P232 1028 aa11.74□□□□□ -0.53
NEDD8-204ENST00000526430 CGNQ9P2M7 1197 aaKnown RBP11.74□□□□□ -0.53
NEDD8-204ENST00000526430 TRDMT1O14717 391 aaKnown RBP11.73□□□□□ -0.53
NEDD8-204ENST00000526430 B3GAT3O94766 335 aa11.73□□□□□ -0.53
NEDD8-204ENST00000526430 APBB3O95704 486 aa11.73□□□□□ -0.53
NEDD8-204ENST00000526430 MYL4P12829 197 aa11.73□□□□□ -0.53
NEDD8-204ENST00000526430 PLA2G2AP14555 144 aa11.73□□□□□ -0.53
NEDD8-204ENST00000526430 GJA1P17302 382 aa11.73□□□□□ -0.53
NEDD8-204ENST00000526430 GBP1P32455 592 aa11.73□□□□□ -0.53
NEDD8-204ENST00000526430 STX17P56962 302 aa11.73□□□□□ -0.53
NEDD8-204ENST00000526430 GRSF1Q12849 480 aaKnown RBP eCLIP11.73□□□□□ -0.53
NEDD8-204ENST00000526430 PTPRJQ12913 1337 aa11.73□□□□□ -0.53
NEDD8-204ENST00000526430 HNRNPDQ14103 355 aaKnown RBP11.73□□□□□ -0.53
NEDD8-204ENST00000526430 TMEM132AQ24JP5 1023 aa11.73□□□□□ -0.53
NEDD8-204ENST00000526430 SKOR2Q2VWA4 1001 aaPredicted RBP11.73□□□□□ -0.53
NEDD8-204ENST00000526430 EDRF1Q3B7T1 1238 aa11.73□□□□□ -0.53
NEDD8-204ENST00000526430 ITPRIPL2Q3MIP1 535 aa11.73□□□□□ -0.53
NEDD8-204ENST00000526430 FSTL4Q6MZW2 842 aa11.73□□□□□ -0.53
NEDD8-204ENST00000526430 C11orf57Q6ZUT1 292 aaPredicted RBP11.73□□□□□ -0.53
NEDD8-204ENST00000526430 SYT13Q7L8C5 426 aa11.73□□□□□ -0.53
NEDD8-204ENST00000526430 BRSK2Q8IWQ3 736 aa11.73□□□□□ -0.53
NEDD8-204ENST00000526430 EFCAB13Q8IY85 973 aa11.73□□□□□ -0.53
NEDD8-204ENST00000526430 MLKLQ8NB16 471 aa11.73□□□□□ -0.53
NEDD8-204ENST00000526430 HNRNPLLQ8WVV9 542 aaKnown RBP11.73□□□□□ -0.53
NEDD8-204ENST00000526430 NELFBQ8WX92 580 aa11.73□□□□□ -0.53
NEDD8-204ENST00000526430 LRIG1Q96JA1 1093 aa11.73□□□□□ -0.53
NEDD8-204ENST00000526430 UROC1Q96N76 676 aa11.73□□□□□ -0.53
NEDD8-204ENST00000526430 HHIPQ96QV1 700 aa11.73□□□□□ -0.53
NEDD8-204ENST00000526430 UBL7Q96S82 380 aaPredicted RBP11.73□□□□□ -0.53
NEDD8-204ENST00000526430 GTPBP4Q9BZE4 634 aaKnown RBP11.73□□□□□ -0.53
NEDD8-204ENST00000526430 PLEKHA5Q9HAU0 1116 aa11.73□□□□□ -0.53
NEDD8-204ENST00000526430 IGSF5Q9NSI5 407 aa11.73□□□□□ -0.53
NEDD8-204ENST00000526430 DKK4Q9UBT3 224 aa11.73□□□□□ -0.53
NEDD8-204ENST00000526430 TSC2P49815 1807 aa11.72□□□□□ -0.53
NEDD8-204ENST00000526430 KIAA0391O15091 583 aaKnown RBP11.72□□□□□ -0.53
NEDD8-204ENST00000526430 RNF40O75150 1001 aa11.72□□□□□ -0.53
NEDD8-204ENST00000526430 C1QL1O75973 258 aa11.72□□□□□ -0.53
NEDD8-204ENST00000526430 LDHAP00338 332 aaKnown RBP11.72□□□□□ -0.53
NEDD8-204ENST00000526430 PTMSP20962 102 aa11.72□□□□□ -0.53
NEDD8-204ENST00000526430 WEE1P30291 646 aa11.72□□□□□ -0.53
NEDD8-204ENST00000526430 CYP2J2P51589 502 aa11.72□□□□□ -0.53
NEDD8-204ENST00000526430 DLG4P78352 724 aa11.72□□□□□ -0.53
NEDD8-204ENST00000526430 CLDN10P78369 228 aa11.72□□□□□ -0.53
NEDD8-204ENST00000526430 ADAM9Q13443 819 aa11.72□□□□□ -0.53
NEDD8-204ENST00000526430 SNRNP35Q16560 246 aaKnown RBP11.72□□□□□ -0.53
NEDD8-204ENST00000526430 GLRA4Q5JXX5 417 aa11.72□□□□□ -0.53
NEDD8-204ENST00000526430 CCNI2Q6ZMN8 369 aaPredicted RBP11.72□□□□□ -0.53
NEDD8-204ENST00000526430 HS2ST1Q7LGA3 356 aa11.72□□□□□ -0.53
NEDD8-204ENST00000526430 ARID3BQ8IVW6 561 aaPredicted RBP11.72□□□□□ -0.53
NEDD8-204ENST00000526430 XXYLT1Q8NBI6 393 aa11.72□□□□□ -0.53
NEDD8-204ENST00000526430 RDH13Q8NBN7 331 aa11.72□□□□□ -0.53
NEDD8-204ENST00000526430 TTC8Q8TAM2 541 aa11.72□□□□□ -0.53
NEDD8-204ENST00000526430 C18orf25Q96B23 403 aaPredicted RBP11.72□□□□□ -0.53
NEDD8-204ENST00000526430 ZFYVE19Q96K21 471 aa11.72□□□□□ -0.53
NEDD8-204ENST00000526430 LRRC3BQ96PB8 259 aa11.72□□□□□ -0.53
NEDD8-204ENST00000526430 CCDC94Q9BW85 323 aaPredicted RBP11.72□□□□□ -0.53
NEDD8-204ENST00000526430 NUSAP1Q9BXS6 441 aaKnown RBP11.72□□□□□ -0.53
NEDD8-204ENST00000526430 LRRC3Q9BY71 257 aa11.72□□□□□ -0.53
NEDD8-204ENST00000526430 HSD3B7Q9H2F3 369 aa11.72□□□□□ -0.53
NEDD8-204ENST00000526430 PDE11AQ9HCR9 933 aa11.72□□□□□ -0.53
NEDD8-204ENST00000526430 PTPN13Q12923 2485 aa11.72□□□□□ -0.53
NEDD8-204ENST00000526430 PTPRQQ9UMZ3 2332 aa11.72□□□□□ -0.53
NEDD8-204ENST00000526430 HELZP42694 1942 aaKnown RBP11.72□□□□□ -0.53
NEDD8-204ENST00000526430 ZNF233A6NK53 670 aa11.71□□□□□ -0.53
NEDD8-204ENST00000526430 H7C4K7 107 aa11.71□□□□□ -0.53
NEDD8-204ENST00000526430 DPYSL4O14531 572 aa11.71□□□□□ -0.53
NEDD8-204ENST00000526430 MAPK13O15264 365 aa11.71□□□□□ -0.53
NEDD8-204ENST00000526430 CALUO43852 315 aaPredicted RBP11.71□□□□□ -0.53
NEDD8-204ENST00000526430 NFICP08651 508 aa11.71□□□□□ -0.53
NEDD8-204ENST00000526430 NR2F2P24468 414 aa11.71□□□□□ -0.53
NEDD8-204ENST00000526430 MATR3P43243 847 aaKnown RBP eCLIP11.71□□□□□ -0.53
NEDD8-204ENST00000526430 TYRO3Q06418 890 aa11.71□□□□□ -0.53
NEDD8-204ENST00000526430 TNK2Q07912 1038 aa11.71□□□□□ -0.53
NEDD8-204ENST00000526430 CYP24A1Q07973 514 aa11.71□□□□□ -0.53
NEDD8-204ENST00000526430 TWF1Q12792 350 aa11.71□□□□□ -0.53
NEDD8-204ENST00000526430 MRPL58Q14197 206 aaKnown RBP11.71□□□□□ -0.53
NEDD8-204ENST00000526430 NCAPHQ15003 741 aa11.71□□□□□ -0.53
NEDD8-204ENST00000526430 PSMD6Q15008 389 aa11.71□□□□□ -0.53
NEDD8-204ENST00000526430 KYAT1Q16773 422 aa11.71□□□□□ -0.53
NEDD8-204ENST00000526430 UPP1Q16831 310 aa11.71□□□□□ -0.53
NEDD8-204ENST00000526430 ZSCAN23Q3MJ62 389 aa11.71□□□□□ -0.53
NEDD8-204ENST00000526430 FBXO43Q4G163 708 aa11.71□□□□□ -0.53
NEDD8-204ENST00000526430 USP39Q53GS9 565 aaKnown RBP11.71□□□□□ -0.53
NEDD8-204ENST00000526430 TRIM61Q5EBN2 209 aa11.71□□□□□ -0.53
NEDD8-204ENST00000526430 JADE1Q6IE81 842 aa11.71□□□□□ -0.53
NEDD8-204ENST00000526430 KLHL10Q6JEL2 608 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms