RNA–Protein interactions for RNA: ENST00000515035.5

TCOF1-214, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,240 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-214ENST00000515035 ZBED2Q9BTP6 218 aa13.78□□□□□ -0.2
TCOF1-214ENST00000515035 P4HA2O15460 535 aa13.77□□□□□ -0.2
TCOF1-214ENST00000515035 RPS12P25398 132 aaKnown RBP13.77□□□□□ -0.2
TCOF1-214ENST00000515035 ACCSLQ4AC99 568 aa13.77□□□□□ -0.2
TCOF1-214ENST00000515035 ZNF677Q86XU0 584 aa13.77□□□□□ -0.2
TCOF1-214ENST00000515035 RSPH1Q8WYR4 309 aa13.77□□□□□ -0.2
TCOF1-214ENST00000515035 TRIM63Q969Q1 353 aa13.77□□□□□ -0.2
TCOF1-214ENST00000515035 DCUN1D1Q96GG9 259 aa13.77□□□□□ -0.2
TCOF1-214ENST00000515035 TRIM8Q9BZR9 551 aa13.77□□□□□ -0.2
TCOF1-214ENST00000515035 DCDC2Q9UHG0 476 aa13.77□□□□□ -0.2
TCOF1-214ENST00000515035 SLC30A1Q9Y6M5 507 aa13.77□□□□□ -0.2
TCOF1-214ENST00000515035 MFN2O95140 757 aa13.77□□□□□ -0.2
TCOF1-214ENST00000515035 HLA-DRAP01903 254 aa13.77□□□□□ -0.2
TCOF1-214ENST00000515035 PCSK7Q16549 785 aa13.77□□□□□ -0.2
TCOF1-214ENST00000515035 ARMC4Q5T2S8 1044 aa13.77□□□□□ -0.2
TCOF1-214ENST00000515035 C12orf60Q5U649 245 aa13.77□□□□□ -0.2
TCOF1-214ENST00000515035 ANKS3Q6ZW76 656 aa13.77□□□□□ -0.2
TCOF1-214ENST00000515035 DEFB107AQ8IZN7 70 aa13.77□□□□□ -0.2
TCOF1-214ENST00000515035 IPMKQ8NFU5 416 aa13.77□□□□□ -0.2
TCOF1-214ENST00000515035 RMND5BQ96G75 393 aaPredicted RBP13.77□□□□□ -0.2
TCOF1-214ENST00000515035 SNX9Q9Y5X1 595 aa13.77□□□□□ -0.2
TCOF1-214ENST00000515035 IQSEC2Q5JU85 1478 aa13.77□□□□□ -0.2
TCOF1-214ENST00000515035 POLR1AO95602 1720 aaPredicted RBP13.77□□□□□ -0.2
TCOF1-214ENST00000515035 E9PBE3 544 aa13.77□□□□□ -0.21
TCOF1-214ENST00000515035 AP5Z1O43299 807 aa13.77□□□□□ -0.21
TCOF1-214ENST00000515035 KLHL41O60662 606 aa13.77□□□□□ -0.21
TCOF1-214ENST00000515035 SUPT7LO94864 414 aa13.77□□□□□ -0.21
TCOF1-214ENST00000515035 PRKCBP05771 671 aa13.77□□□□□ -0.21
TCOF1-214ENST00000515035 ANTXR2P58335 489 aa13.77□□□□□ -0.21
TCOF1-214ENST00000515035 CACNB2Q08289 660 aaPredicted RBP13.77□□□□□ -0.21
TCOF1-214ENST00000515035 SEL1L3Q68CR1 1132 aa13.77□□□□□ -0.21
TCOF1-214ENST00000515035 LRRC74BQ6ZQY2 392 aa13.77□□□□□ -0.21
TCOF1-214ENST00000515035 LRRN4CLQ8ND94 238 aa13.77□□□□□ -0.21
TCOF1-214ENST00000515035 ZNF483Q8TF39 744 aaPredicted RBP13.77□□□□□ -0.21
TCOF1-214ENST00000515035 STK32AQ8WU08 396 aa13.77□□□□□ -0.21
TCOF1-214ENST00000515035 ZKSCAN4Q969J2 545 aaPredicted RBP13.77□□□□□ -0.21
TCOF1-214ENST00000515035 ZFRQ96KR1 1074 aaKnown RBP13.77□□□□□ -0.21
TCOF1-214ENST00000515035 TMEM8AQ9HCN3 771 aa13.77□□□□□ -0.21
TCOF1-214ENST00000515035 TJP2Q9UDY2 1190 aa13.77□□□□□ -0.21
TCOF1-214ENST00000515035 C19orf81C9J6K1 198 aa13.77□□□□□ -0.21
TCOF1-214ENST00000515035 TBC1D12O60347 775 aa13.77□□□□□ -0.21
TCOF1-214ENST00000515035 AP1G2O75843 785 aa13.77□□□□□ -0.21
TCOF1-214ENST00000515035 DGAT1O75907 488 aa13.77□□□□□ -0.21
TCOF1-214ENST00000515035 TNFAIP8O95379 198 aa13.77□□□□□ -0.21
TCOF1-214ENST00000515035 BGNP21810 368 aa13.77□□□□□ -0.21
TCOF1-214ENST00000515035 PTK6Q13882 451 aa13.77□□□□□ -0.21
TCOF1-214ENST00000515035 GPAT2Q6NUI2 795 aa13.77□□□□□ -0.21
TCOF1-214ENST00000515035 CLVS1Q8IUQ0 354 aaPredicted RBP13.77□□□□□ -0.21
TCOF1-214ENST00000515035 C1orf131Q8NDD1 294 aaKnown RBP13.77□□□□□ -0.21
TCOF1-214ENST00000515035 ATP8B4Q8TF62 1192 aa13.77□□□□□ -0.21
TCOF1-214ENST00000515035 ACSF2Q96CM8 615 aaPredicted RBP13.77□□□□□ -0.21
TCOF1-214ENST00000515035 FAR2Q96K12 515 aa13.77□□□□□ -0.21
TCOF1-214ENST00000515035 PACSIN1Q9BY11 444 aa13.77□□□□□ -0.21
TCOF1-214ENST00000515035 NOL6Q9H6R4 1146 aaKnown RBP13.77□□□□□ -0.21
TCOF1-214ENST00000515035 RPAP3Q9H6T3 665 aaPredicted RBP13.77□□□□□ -0.21
TCOF1-214ENST00000515035 COPG2Q9UBF2 871 aa13.77□□□□□ -0.21
TCOF1-214ENST00000515035 POLIQ9UNA4 740 aa13.77□□□□□ -0.21
TCOF1-214ENST00000515035 GOLGA8TH3BQL2 631 aa13.77□□□□□ -0.21
TCOF1-214ENST00000515035 SMIM5Q71RC9 77 aa13.77□□□□□ -0.21
TCOF1-214ENST00000515035 GDPD5Q8WTR4 605 aa13.77□□□□□ -0.21
TCOF1-214ENST00000515035 LPAR1Q92633 364 aa13.77□□□□□ -0.21
TCOF1-214ENST00000515035 FUCA2Q9BTY2 467 aa13.77□□□□□ -0.21
TCOF1-214ENST00000515035 FAM192AQ9GZU8 254 aa13.77□□□□□ -0.21
TCOF1-214ENST00000515035 SEMA4AQ9H3S1 761 aa13.77□□□□□ -0.21
TCOF1-214ENST00000515035 RERGLQ9H628 205 aa13.77□□□□□ -0.21
TCOF1-214ENST00000515035 KCND2Q9NZV8 630 aa13.77□□□□□ -0.21
TCOF1-214ENST00000515035 RPS6KL1Q9Y6S9 549 aa13.77□□□□□ -0.21
TCOF1-214ENST00000515035 CD44P16070 742 aaKnown RBP13.76□□□□□ -0.21
TCOF1-214ENST00000515035 EPHB2P29323 1055 aa13.76□□□□□ -0.21
TCOF1-214ENST00000515035 PLIN5Q00G26 463 aa13.76□□□□□ -0.21
TCOF1-214ENST00000515035 MAPK11Q15759 364 aa13.76□□□□□ -0.21
TCOF1-214ENST00000515035 FIGNQ5HY92 759 aa13.76□□□□□ -0.21
TCOF1-214ENST00000515035 TAF2Q6P1X5 1199 aa13.76□□□□□ -0.21
TCOF1-214ENST00000515035 RBM43Q6ZSC3 357 aaKnown RBP13.76□□□□□ -0.21
TCOF1-214ENST00000515035 TMEM237Q96Q45 408 aa13.76□□□□□ -0.21
TCOF1-214ENST00000515035 BTBD10Q9BSF8 475 aa13.76□□□□□ -0.21
TCOF1-214ENST00000515035 ZNF862O60290 1169 aa13.76□□□□□ -0.21
TCOF1-214ENST00000515035 GUCA1CO95843 209 aa13.76□□□□□ -0.21
TCOF1-214ENST00000515035 GPD1P21695 349 aa13.76□□□□□ -0.21
TCOF1-214ENST00000515035 ST13P50502 369 aaKnown RBP13.76□□□□□ -0.21
TCOF1-214ENST00000515035 ALDH5A1P51649 535 aaPredicted RBP13.76□□□□□ -0.21
TCOF1-214ENST00000515035 C21orf59P57076 290 aa13.76□□□□□ -0.21
TCOF1-214ENST00000515035 POU4F1Q01851 419 aa13.76□□□□□ -0.21
TCOF1-214ENST00000515035 TRIM71Q2Q1W2 868 aaKnown RBP13.76□□□□□ -0.21
TCOF1-214ENST00000515035 NAPEPLDQ6IQ20 393 aa13.76□□□□□ -0.21
TCOF1-214ENST00000515035 KCNV1Q6PIU1 500 aa13.76□□□□□ -0.21
TCOF1-214ENST00000515035 MED15Q96RN5 788 aa13.76□□□□□ -0.21
TCOF1-214ENST00000515035 CEP44Q9C0F1 390 aa13.76□□□□□ -0.21
TCOF1-214ENST00000515035 RIMS1Q86UR5 1692 aaKnown RBP13.76□□□□□ -0.21
TCOF1-214ENST00000515035 TNPO2O14787 897 aaKnown RBP13.76□□□□□ -0.21
TCOF1-214ENST00000515035 TBX3O15119 743 aa13.76□□□□□ -0.21
TCOF1-214ENST00000515035 EIF3DO15371 548 aaKnown RBP eCLIP13.76□□□□□ -0.21
TCOF1-214ENST00000515035 RGS4P49798 205 aa13.76□□□□□ -0.21
TCOF1-214ENST00000515035 HMGCS2P54868 508 aa13.76□□□□□ -0.21
TCOF1-214ENST00000515035 DCTN2Q13561 401 aaKnown RBP13.76□□□□□ -0.21
TCOF1-214ENST00000515035 COG2Q14746 738 aa13.76□□□□□ -0.21
TCOF1-214ENST00000515035 SLC24A2Q9UI40 661 aa13.76□□□□□ -0.21
TCOF1-214ENST00000515035 TECPR2O15040 1411 aa13.76□□□□□ -0.21
TCOF1-214ENST00000515035 MYO3AQ8NEV4 1616 aa13.76□□□□□ -0.21
TCOF1-214ENST00000515035 PDZK1P1A8MUH7 402 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms