RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 SCFD2Q8WU76 684 aa5.19□□□□□ -1.58
NUP54-206ENST00000508465 AFG1LQ8WV93 481 aa5.19□□□□□ -1.58
NUP54-206ENST00000508465 UIMC1Q96RL1 719 aa5.19□□□□□ -1.58
NUP54-206ENST00000508465 IWS1Q96ST2 819 aa5.19□□□□□ -1.58
NUP54-206ENST00000508465 MAP3K14Q99558 947 aa5.19□□□□□ -1.58
NUP54-206ENST00000508465 LZTS2Q9BRK4 669 aa5.19□□□□□ -1.58
NUP54-206ENST00000508465 SPZ1Q9BXG8 430 aa5.19□□□□□ -1.58
NUP54-206ENST00000508465 UPF3BQ9BZI7 483 aaKnown RBP5.19□□□□□ -1.58
NUP54-206ENST00000508465 PRO3102Q9H379 93 aa5.19□□□□□ -1.58
NUP54-206ENST00000508465 PSTPIP2Q9H939 334 aa5.19□□□□□ -1.58
NUP54-206ENST00000508465 NCOA5Q9HCD5 579 aaKnown RBP5.19□□□□□ -1.58
NUP54-206ENST00000508465 STARD7Q9NQZ5 370 aa5.19□□□□□ -1.58
NUP54-206ENST00000508465 CDC42EP3Q9UKI2 254 aa5.19□□□□□ -1.58
NUP54-206ENST00000508465 ATP23Q9Y6H3 246 aa5.19□□□□□ -1.58
NUP54-206ENST00000508465 LAMA3Q16787 3333 aa5.18□□□□□ -1.58
NUP54-206ENST00000508465 COL6A3P12111 3177 aa5.18□□□□□ -1.58
NUP54-206ENST00000508465 A0A0G2JNJ9 132 aa5.18□□□□□ -1.58
NUP54-206ENST00000508465 A0A0U1RQG5 324 aaPredicted RBP5.18□□□□□ -1.58
NUP54-206ENST00000508465 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP5.18□□□□□ -1.58
NUP54-206ENST00000508465 FAM90A27PA6NNH2 459 aa5.18□□□□□ -1.58
NUP54-206ENST00000508465 GOLGA8AA7E2F4 631 aa5.18□□□□□ -1.58
NUP54-206ENST00000508465 GOLGA8BA8MQT2 603 aa5.18□□□□□ -1.58
NUP54-206ENST00000508465 B4DLN1 442 aa5.18□□□□□ -1.58
NUP54-206ENST00000508465 MEIS2O14770 477 aa5.18□□□□□ -1.58
NUP54-206ENST00000508465 ZEB2O60315 1214 aa5.18□□□□□ -1.58
NUP54-206ENST00000508465 PABPC1P11940 636 aaKnown RBP5.18□□□□□ -1.58
NUP54-206ENST00000508465 PDIA3P30101 505 aaKnown RBP5.18□□□□□ -1.58
NUP54-206ENST00000508465 FXR1P51114 621 aaKnown RBP eCLIP5.18□□□□□ -1.58
NUP54-206ENST00000508465 MRPL12P52815 198 aaKnown RBP5.18□□□□□ -1.58
NUP54-206ENST00000508465 MRPS9P82933 396 aaKnown RBP5.18□□□□□ -1.58
NUP54-206ENST00000508465 ARHGAP1Q07960 439 aa5.18□□□□□ -1.58
NUP54-206ENST00000508465 STK3Q13188 491 aa5.18□□□□□ -1.58
NUP54-206ENST00000508465 PGM5Q15124 567 aa5.18□□□□□ -1.58
NUP54-206ENST00000508465 PPP2R5BQ15173 497 aa5.18□□□□□ -1.58
NUP54-206ENST00000508465 SHHQ15465 462 aa5.18□□□□□ -1.58
NUP54-206ENST00000508465 STILQ15468 1287 aa5.18□□□□□ -1.58
NUP54-206ENST00000508465 GPR19Q15760 415 aa5.18□□□□□ -1.58
NUP54-206ENST00000508465 C9orf50Q5SZB4 431 aa5.18□□□□□ -1.58
NUP54-206ENST00000508465 TRIM68Q6AZZ1 485 aa5.18□□□□□ -1.58
NUP54-206ENST00000508465 RUFY3Q7L099 469 aa5.18□□□□□ -1.58
NUP54-206ENST00000508465 GPR135Q8IZ08 494 aa5.18□□□□□ -1.58
NUP54-206ENST00000508465 PHKBQ93100 1093 aa5.18□□□□□ -1.58
NUP54-206ENST00000508465 TMEM176AQ96HP8 235 aa5.18□□□□□ -1.58
NUP54-206ENST00000508465 PGBD1Q96JS3 809 aa5.18□□□□□ -1.58
NUP54-206ENST00000508465 GLT1D1Q96MS3 346 aa5.18□□□□□ -1.58
NUP54-206ENST00000508465 MPHOSPH6Q99547 160 aaKnown RBP5.18□□□□□ -1.58
NUP54-206ENST00000508465 PDCD2LQ9BRP1 358 aa5.18□□□□□ -1.58
NUP54-206ENST00000508465 BTBD2Q9BX70 525 aa5.18□□□□□ -1.58
NUP54-206ENST00000508465 TRMT13Q9NUP7 481 aaKnown RBP5.18□□□□□ -1.58
NUP54-206ENST00000508465 TMEM260Q9NX78 707 aa5.18□□□□□ -1.58
NUP54-206ENST00000508465 Q9UFV3 132 aa5.18□□□□□ -1.58
NUP54-206ENST00000508465 SEC63Q9UGP8 760 aaKnown RBP5.18□□□□□ -1.58
NUP54-206ENST00000508465 SRPK3Q9UPE1 567 aa5.18□□□□□ -1.58
NUP54-206ENST00000508465 CYP46A1Q9Y6A2 500 aa5.18□□□□□ -1.58
NUP54-206ENST00000508465 ALPK3Q96L96 1907 aa5.18□□□□□ -1.58
NUP54-206ENST00000508465 ELP1O95163 1332 aa5.18□□□□□ -1.58
NUP54-206ENST00000508465 SMCO2A6NFE2 343 aa5.17□□□□□ -1.58
NUP54-206ENST00000508465 KIAA0355O15063 1070 aa5.17□□□□□ -1.58
NUP54-206ENST00000508465 SLC26A4O43511 780 aa5.17□□□□□ -1.58
NUP54-206ENST00000508465 TIMP1P01033 207 aa5.17□□□□□ -1.58
NUP54-206ENST00000508465 GH1P01241 217 aa5.17□□□□□ -1.58
NUP54-206ENST00000508465 CLTBP09497 229 aa5.17□□□□□ -1.58
NUP54-206ENST00000508465 CYP2C9P11712 490 aa5.17□□□□□ -1.58
NUP54-206ENST00000508465 LMO1P25800 156 aa5.17□□□□□ -1.58
NUP54-206ENST00000508465 PSMA5P28066 241 aa5.17□□□□□ -1.58
NUP54-206ENST00000508465 CST5P28325 142 aaPredicted RBP5.17□□□□□ -1.58
NUP54-206ENST00000508465 SMARCA1P28370 1054 aa5.17□□□□□ -1.58
NUP54-206ENST00000508465 CCND2P30279 289 aa5.17□□□□□ -1.58
NUP54-206ENST00000508465 CPT1AP50416 773 aa5.17□□□□□ -1.58
NUP54-206ENST00000508465 METAP2P50579 478 aaKnown RBP eCLIP5.17□□□□□ -1.58
NUP54-206ENST00000508465 NAPAP54920 295 aa5.17□□□□□ -1.58
NUP54-206ENST00000508465 CCL23P55773 120 aa5.17□□□□□ -1.58
NUP54-206ENST00000508465 SP4Q02446 784 aa5.17□□□□□ -1.58
NUP54-206ENST00000508465 TRAF1Q13077 416 aa5.17□□□□□ -1.58
NUP54-206ENST00000508465 PAK1Q13153 545 aa5.17□□□□□ -1.58
NUP54-206ENST00000508465 GNL2Q13823 731 aaKnown RBP5.17□□□□□ -1.58
NUP54-206ENST00000508465 TOB2Q14106 344 aaPredicted RBP5.17□□□□□ -1.58
NUP54-206ENST00000508465 NTRK3Q16288 839 aa5.17□□□□□ -1.58
NUP54-206ENST00000508465 FAM47CQ5HY64 1035 aa5.17□□□□□ -1.58
NUP54-206ENST00000508465 CELF3Q5SZQ8 465 aaKnown RBP5.17□□□□□ -1.58
NUP54-206ENST00000508465 LAIR1Q6GTX8 287 aa5.17□□□□□ -1.58
NUP54-206ENST00000508465 ZNF662Q6ZS27 426 aa5.17□□□□□ -1.58
NUP54-206ENST00000508465 C16orf59Q7L2K0 433 aa5.17□□□□□ -1.58
NUP54-206ENST00000508465 ANKRD33Q7Z3H0 272 aa5.17□□□□□ -1.58
NUP54-206ENST00000508465 DHX37Q8IY37 1157 aaKnown RBP5.17□□□□□ -1.58
NUP54-206ENST00000508465 SLC43A3Q8NBI5 491 aa5.17□□□□□ -1.58
NUP54-206ENST00000508465 OR14K1Q8NGZ2 314 aa5.17□□□□□ -1.58
NUP54-206ENST00000508465 CYP2W1Q8TAV3 490 aa5.17□□□□□ -1.58
NUP54-206ENST00000508465 CUL5Q93034 780 aa5.17□□□□□ -1.58
NUP54-206ENST00000508465 SPATA33Q96N06 139 aa5.17□□□□□ -1.58
NUP54-206ENST00000508465 MTG1Q9BT17 334 aaPredicted RBP5.17□□□□□ -1.58
NUP54-206ENST00000508465 SLC26A6Q9BXS9 759 aa5.17□□□□□ -1.58
NUP54-206ENST00000508465 CATSPERZQ9NTU4 200 aa5.17□□□□□ -1.58
NUP54-206ENST00000508465 PDRG1Q9NUG6 133 aa5.17□□□□□ -1.58
NUP54-206ENST00000508465 PCDHA6Q9UN73 950 aa5.17□□□□□ -1.58
NUP54-206ENST00000508465 Q9Y3F1 56 aa5.17□□□□□ -1.58
NUP54-206ENST00000508465 PCDHA8Q9Y5H6 950 aa5.17□□□□□ -1.58
NUP54-206ENST00000508465 TRIOBPQ9H2D6 2365 aa5.17□□□□□ -1.58
NUP54-206ENST00000508465 UMODL1Q5DID0 1318 aa5.17□□□□□ -1.58
NUP54-206ENST00000508465 PRUNE2Q8WUY3 3088 aa5.17□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms