RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 CCT6BQ92526 530 aa4.81□□□□□ -1.64
HMGB1P28-201ENST00000507778 HAS1Q92839 578 aa4.81□□□□□ -1.64
HMGB1P28-201ENST00000507778 PTCD3Q96EY7 689 aaKnown RBP4.81□□□□□ -1.64
HMGB1P28-201ENST00000507778 TRIM5Q9C035 493 aa4.81□□□□□ -1.64
HMGB1P28-201ENST00000507778 PCDHAC1Q9H158 963 aa4.81□□□□□ -1.64
HMGB1P28-201ENST00000507778 AS3MTQ9HBK9 375 aa4.81□□□□□ -1.64
HMGB1P28-201ENST00000507778 GBA2Q9HCG7 927 aaPredicted RBP4.81□□□□□ -1.64
HMGB1P28-201ENST00000507778 ZBTB26Q9HCK0 441 aa4.81□□□□□ -1.64
HMGB1P28-201ENST00000507778 OBP2BQ9NPH6 170 aa4.81□□□□□ -1.64
HMGB1P28-201ENST00000507778 TBCCD1Q9NVR7 557 aa4.81□□□□□ -1.64
HMGB1P28-201ENST00000507778 SERTAD3Q9UJW9 196 aa4.81□□□□□ -1.64
HMGB1P28-201ENST00000507778 ZMYND8Q9ULU4 1186 aaPredicted RBP4.81□□□□□ -1.64
HMGB1P28-201ENST00000507778 SSX2IPQ9Y2D8 614 aa4.81□□□□□ -1.64
HMGB1P28-201ENST00000507778 MORC2Q9Y6X9 1032 aaPredicted RBP4.81□□□□□ -1.64
HMGB1P28-201ENST00000507778 PIP5K1CO60331 668 aa4.8□□□□□ -1.64
HMGB1P28-201ENST00000507778 CSF1RP07333 972 aa4.8□□□□□ -1.64
HMGB1P28-201ENST00000507778 PTGS2P35354 604 aa4.8□□□□□ -1.64
HMGB1P28-201ENST00000507778 GRK6P43250 576 aa4.8□□□□□ -1.64
HMGB1P28-201ENST00000507778 PDE6CP51160 858 aa4.8□□□□□ -1.64
HMGB1P28-201ENST00000507778 TP53BP2Q13625 1128 aa4.8□□□□□ -1.64
HMGB1P28-201ENST00000507778 EEF1AKMT2Q5JPI9 291 aaKnown RBP4.8□□□□□ -1.64
HMGB1P28-201ENST00000507778 CERCAMQ5T4B2 595 aa4.8□□□□□ -1.64
HMGB1P28-201ENST00000507778 FAXCQ5TGI0 409 aa4.8□□□□□ -1.64
HMGB1P28-201ENST00000507778 MANEALQ5VSG8 457 aa4.8□□□□□ -1.64
HMGB1P28-201ENST00000507778 ARL6IP4Q66PJ3 421 aaKnown RBP4.8□□□□□ -1.64
HMGB1P28-201ENST00000507778 RAP1GAP2Q684P5 730 aa4.8□□□□□ -1.64
HMGB1P28-201ENST00000507778 MRNIPQ6NTE8 343 aa4.8□□□□□ -1.64
HMGB1P28-201ENST00000507778 TLDC1Q6P9B6 456 aa4.8□□□□□ -1.64
HMGB1P28-201ENST00000507778 ARHGEF19Q8IW93 802 aa4.8□□□□□ -1.64
HMGB1P28-201ENST00000507778 CCDC28AQ8IWP9 274 aa4.8□□□□□ -1.64
HMGB1P28-201ENST00000507778 MYCT1Q8N699 235 aa4.8□□□□□ -1.64
HMGB1P28-201ENST00000507778 B3GALNT2Q8NCR0 500 aa4.8□□□□□ -1.64
HMGB1P28-201ENST00000507778 SLC30A5Q8TAD4 765 aa4.8□□□□□ -1.64
HMGB1P28-201ENST00000507778 CACTINQ8WUQ7 758 aaKnown RBP4.8□□□□□ -1.64
HMGB1P28-201ENST00000507778 LENG9Q96B70 501 aa4.8□□□□□ -1.64
HMGB1P28-201ENST00000507778 LTV1Q96GA3 475 aaPredicted RBP4.8□□□□□ -1.64
HMGB1P28-201ENST00000507778 ZNF668Q96K58 619 aaPredicted RBP4.8□□□□□ -1.64
HMGB1P28-201ENST00000507778 ACTRT3Q9BYD9 372 aa4.8□□□□□ -1.64
HMGB1P28-201ENST00000507778 NRDE2Q9H7Z3 1164 aa4.8□□□□□ -1.64
HMGB1P28-201ENST00000507778 TMOD4Q9NZQ9 345 aa4.8□□□□□ -1.64
HMGB1P28-201ENST00000507778 TESQ9UGI8 421 aaKnown RBP4.8□□□□□ -1.64
HMGB1P28-201ENST00000507778 HPSEQ9Y251 543 aa4.8□□□□□ -1.64
HMGB1P28-201ENST00000507778 CENPVL1A0A0U1RR11 272 aa4.79□□□□□ -1.64
HMGB1P28-201ENST00000507778 LGALS16A8MUM7 142 aa4.79□□□□□ -1.64
HMGB1P28-201ENST00000507778 PIP5K1BO14986 540 aa4.79□□□□□ -1.64
HMGB1P28-201ENST00000507778 NPC1O15118 1278 aa4.79□□□□□ -1.64
HMGB1P28-201ENST00000507778 PPM1DO15297 605 aa4.79□□□□□ -1.64
HMGB1P28-201ENST00000507778 CD3EAPO15446 510 aaKnown RBP4.79□□□□□ -1.64
HMGB1P28-201ENST00000507778 CREB3O43889 395 aa4.79□□□□□ -1.64
HMGB1P28-201ENST00000507778 CCNT2O60583 730 aaKnown RBP4.79□□□□□ -1.64
HMGB1P28-201ENST00000507778 LPXNO60711 386 aa4.79□□□□□ -1.64
HMGB1P28-201ENST00000507778 SRGNP10124 158 aa4.79□□□□□ -1.64
HMGB1P28-201ENST00000507778 PPP3CBP16298 524 aa4.79□□□□□ -1.64
HMGB1P28-201ENST00000507778 EGR1P18146 543 aa4.79□□□□□ -1.64
HMGB1P28-201ENST00000507778 ADORA2AP29274 412 aa4.79□□□□□ -1.64
HMGB1P28-201ENST00000507778 PDIA3P30101 505 aaKnown RBP4.79□□□□□ -1.64
HMGB1P28-201ENST00000507778 HNRNPMP52272 730 aaKnown RBP eCLIP4.79□□□□□ -1.64
HMGB1P28-201ENST00000507778 BCAT1P54687 386 aa4.79□□□□□ -1.64
HMGB1P28-201ENST00000507778 ITIH3Q06033 890 aa4.79□□□□□ -1.64
HMGB1P28-201ENST00000507778 FOXE3Q13461 319 aa4.79□□□□□ -1.64
HMGB1P28-201ENST00000507778 TUBA3CQ13748 450 aa4.79□□□□□ -1.64
HMGB1P28-201ENST00000507778 PTK2BQ14289 1009 aa4.79□□□□□ -1.64
HMGB1P28-201ENST00000507778 SPARCL1Q14515 664 aa4.79□□□□□ -1.64
HMGB1P28-201ENST00000507778 SF3B3Q15393 1217 aaKnown RBP4.79□□□□□ -1.64
HMGB1P28-201ENST00000507778 DEPDC1Q5TB30 811 aa4.79□□□□□ -1.64
HMGB1P28-201ENST00000507778 TUBA3EQ6PEY2 450 aa4.79□□□□□ -1.64
HMGB1P28-201ENST00000507778 GPR149Q86SP6 731 aa4.79□□□□□ -1.64
HMGB1P28-201ENST00000507778 ABRAQ8N0Z2 381 aa4.79□□□□□ -1.64
HMGB1P28-201ENST00000507778 NKAPQ8N5F7 415 aaKnown RBP4.79□□□□□ -1.64
HMGB1P28-201ENST00000507778 ATG16L2Q8NAA4 619 aa4.79□□□□□ -1.64
HMGB1P28-201ENST00000507778 SPATA5Q8NB90 893 aa4.79□□□□□ -1.64
HMGB1P28-201ENST00000507778 IPO4Q8TEX9 1081 aaKnown RBP4.79□□□□□ -1.64
HMGB1P28-201ENST00000507778 TMEM171Q8WVE6 324 aa4.79□□□□□ -1.64
HMGB1P28-201ENST00000507778 OSCP1Q8WVF1 389 aa4.79□□□□□ -1.64
HMGB1P28-201ENST00000507778 ATRIPQ8WXE1 791 aa4.79□□□□□ -1.64
HMGB1P28-201ENST00000507778 FAM227BQ96M60 508 aa4.79□□□□□ -1.64
HMGB1P28-201ENST00000507778 RMDN3Q96TC7 470 aa4.79□□□□□ -1.64
HMGB1P28-201ENST00000507778 SLC25A32Q9H2D1 315 aa4.79□□□□□ -1.64
HMGB1P28-201ENST00000507778 TMEM8AQ9HCN3 771 aa4.79□□□□□ -1.64
HMGB1P28-201ENST00000507778 SLC2A4RGQ9NR83 387 aa4.79□□□□□ -1.64
HMGB1P28-201ENST00000507778 IGSF9Q9P2J2 1179 aa4.79□□□□□ -1.64
HMGB1P28-201ENST00000507778 ANKFY1Q9P2R3 1169 aa4.79□□□□□ -1.64
HMGB1P28-201ENST00000507778 DNAJB11Q9UBS4 358 aa4.79□□□□□ -1.64
HMGB1P28-201ENST00000507778 SNX2O60749 519 aa4.78□□□□□ -1.64
HMGB1P28-201ENST00000507778 ITGAMP11215 1152 aa4.78□□□□□ -1.64
HMGB1P28-201ENST00000507778 EPHA3P29320 983 aa4.78□□□□□ -1.64
HMGB1P28-201ENST00000507778 UQCRC1P31930 480 aa4.78□□□□□ -1.64
HMGB1P28-201ENST00000507778 PGDP52209 483 aa4.78□□□□□ -1.64
HMGB1P28-201ENST00000507778 NXPH1P58417 271 aa4.78□□□□□ -1.64
HMGB1P28-201ENST00000507778 DGCR2P98153 550 aa4.78□□□□□ -1.64
HMGB1P28-201ENST00000507778 GALNT1Q10472 559 aaPredicted RBP4.78□□□□□ -1.64
HMGB1P28-201ENST00000507778 SCAPQ12770 1279 aa4.78□□□□□ -1.64
HMGB1P28-201ENST00000507778 SLC5A9Q2M3M2 681 aa4.78□□□□□ -1.64
HMGB1P28-201ENST00000507778 ARHGAP15Q53QZ3 475 aa4.78□□□□□ -1.64
HMGB1P28-201ENST00000507778 TMTC4Q5T4D3 741 aa4.78□□□□□ -1.64
HMGB1P28-201ENST00000507778 ABHD17BQ5VST6 288 aa4.78□□□□□ -1.64
HMGB1P28-201ENST00000507778 KCNV1Q6PIU1 500 aa4.78□□□□□ -1.64
HMGB1P28-201ENST00000507778 RHOUQ7L0Q8 258 aa4.78□□□□□ -1.64
HMGB1P28-201ENST00000507778 DTX2Q86UW9 622 aa4.78□□□□□ -1.64
HMGB1P28-201ENST00000507778 IZUMO1Q8IYV9 350 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms