RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 TMEM191BP0C7N4 346 aa8.58□□□□□ -1.04
SCN1A-207ENST00000507401 HAPLN1P10915 354 aaPredicted RBP8.58□□□□□ -1.04
SCN1A-207ENST00000507401 MYL4P12829 197 aa8.58□□□□□ -1.04
SCN1A-207ENST00000507401 FCARP24071 287 aa8.58□□□□□ -1.04
SCN1A-207ENST00000507401 BRD2P25440 801 aaKnown RBP8.58□□□□□ -1.04
SCN1A-207ENST00000507401 CALRP27797 417 aaKnown RBP8.58□□□□□ -1.04
SCN1A-207ENST00000507401 POLR2BP30876 1174 aaKnown RBP8.58□□□□□ -1.04
SCN1A-207ENST00000507401 MAGEA9P43362 315 aa8.58□□□□□ -1.04
SCN1A-207ENST00000507401 LHX1P48742 406 aa8.58□□□□□ -1.04
SCN1A-207ENST00000507401 HNRNPH2P55795 449 aaKnown RBP8.58□□□□□ -1.04
SCN1A-207ENST00000507401 MYL7Q01449 175 aa8.58□□□□□ -1.04
SCN1A-207ENST00000507401 SNW1Q13573 536 aaKnown RBP8.58□□□□□ -1.04
SCN1A-207ENST00000507401 VEPH1Q14D04 833 aa8.58□□□□□ -1.04
SCN1A-207ENST00000507401 MLF2Q15773 248 aaPredicted RBP8.58□□□□□ -1.04
SCN1A-207ENST00000507401 FOXD4L6Q3SYB3 417 aaPredicted RBP8.58□□□□□ -1.04
SCN1A-207ENST00000507401 SLC39A12Q504Y0 691 aa8.58□□□□□ -1.04
SCN1A-207ENST00000507401 FOXD4L3Q6VB84 417 aaPredicted RBP8.58□□□□□ -1.04
SCN1A-207ENST00000507401 ZNF852Q6ZMS4 543 aa8.58□□□□□ -1.04
SCN1A-207ENST00000507401 HS2ST1Q7LGA3 356 aa8.58□□□□□ -1.04
SCN1A-207ENST00000507401 BPHLQ86WA6 291 aaPredicted RBP8.58□□□□□ -1.04
SCN1A-207ENST00000507401 TMC8Q8IU68 726 aa8.58□□□□□ -1.04
SCN1A-207ENST00000507401 WDR49Q8IV35 697 aa8.58□□□□□ -1.04
SCN1A-207ENST00000507401 LRRC8AQ8IWT6 810 aa8.58□□□□□ -1.04
SCN1A-207ENST00000507401 CEP57L1Q8IYX8 460 aa8.58□□□□□ -1.04
SCN1A-207ENST00000507401 XXYLT1Q8NBI6 393 aa8.58□□□□□ -1.04
SCN1A-207ENST00000507401 GLIS3Q8NEA6 775 aa8.58□□□□□ -1.04
SCN1A-207ENST00000507401 ST13P5Q8NFI4 369 aaPredicted RBP8.58□□□□□ -1.04
SCN1A-207ENST00000507401 PJA1Q8NG27 643 aa8.58□□□□□ -1.04
SCN1A-207ENST00000507401 SHKBP1Q8TBC3 707 aa8.58□□□□□ -1.04
SCN1A-207ENST00000507401 ZSCAN18Q8TBC5 510 aaPredicted RBP8.58□□□□□ -1.04
SCN1A-207ENST00000507401 LEO1Q8WVC0 666 aaPredicted RBP8.58□□□□□ -1.04
SCN1A-207ENST00000507401 ANKRD36BP1Q96IX9 119 aa8.58□□□□□ -1.04
SCN1A-207ENST00000507401 ZSWIM3Q96MP5 696 aa8.58□□□□□ -1.04
SCN1A-207ENST00000507401 TMEM209Q96SK2 561 aa8.58□□□□□ -1.04
SCN1A-207ENST00000507401 KXD1Q9BQD3 176 aa8.58□□□□□ -1.04
SCN1A-207ENST00000507401 PLA2G2FQ9BZM2 168 aa8.58□□□□□ -1.04
SCN1A-207ENST00000507401 SEMA4AQ9H3S1 761 aa8.58□□□□□ -1.04
SCN1A-207ENST00000507401 DEF6Q9H4E7 631 aa8.58□□□□□ -1.04
SCN1A-207ENST00000507401 ABCB6Q9NP58 842 aa8.58□□□□□ -1.04
SCN1A-207ENST00000507401 AGPAT3Q9NRZ7 376 aa8.58□□□□□ -1.04
SCN1A-207ENST00000507401 BCCIPQ9P287 314 aaKnown RBP eCLIP8.58□□□□□ -1.04
SCN1A-207ENST00000507401 MRPS17Q9Y2R5 130 aaKnown RBP8.58□□□□□ -1.04
SCN1A-207ENST00000507401 PCDHB5Q9Y5E4 795 aa8.58□□□□□ -1.04
SCN1A-207ENST00000507401 TCHHQ07283 1943 aa8.58□□□□□ -1.04
SCN1A-207ENST00000507401 ZFHX2Q9C0A1 2572 aaPredicted RBP8.58□□□□□ -1.04
SCN1A-207ENST00000507401 FAM237AA0A1B0GTK4 181 aa8.57□□□□□ -1.04
SCN1A-207ENST00000507401 EFCAB8A8MWE9 144 aa8.57□□□□□ -1.04
SCN1A-207ENST00000507401 MAN2B1O00754 1011 aa8.57□□□□□ -1.04
SCN1A-207ENST00000507401 ZRANB2O95218 330 aaKnown RBP eCLIP8.57□□□□□ -1.04
SCN1A-207ENST00000507401 KRT19P08727 400 aa8.57□□□□□ -1.04
SCN1A-207ENST00000507401 TIMP2P16035 220 aa8.57□□□□□ -1.04
SCN1A-207ENST00000507401 CDC25CP30307 473 aa8.57□□□□□ -1.04
SCN1A-207ENST00000507401 AFMP43652 599 aa8.57□□□□□ -1.04
SCN1A-207ENST00000507401 GTF2A1P52655 376 aaPredicted RBP8.57□□□□□ -1.04
SCN1A-207ENST00000507401 TSPY1Q01534 308 aa8.57□□□□□ -1.04
SCN1A-207ENST00000507401 CUL4BQ13620 913 aa8.57□□□□□ -1.04
SCN1A-207ENST00000507401 PSMD6Q15008 389 aa8.57□□□□□ -1.04
SCN1A-207ENST00000507401 ANGPT1Q15389 498 aa8.57□□□□□ -1.04
SCN1A-207ENST00000507401 TEAD2Q15562 447 aa8.57□□□□□ -1.04
SCN1A-207ENST00000507401 SNRNP35Q16560 246 aaKnown RBP8.57□□□□□ -1.04
SCN1A-207ENST00000507401 KNOP1Q1ED39 458 aaKnown RBP8.57□□□□□ -1.04
SCN1A-207ENST00000507401 MGAT5BQ3V5L5 792 aa8.57□□□□□ -1.04
SCN1A-207ENST00000507401 ARHGAP15Q53QZ3 475 aa8.57□□□□□ -1.04
SCN1A-207ENST00000507401 FBXO38Q6PIJ6 1188 aa8.57□□□□□ -1.04
SCN1A-207ENST00000507401 C1orf228Q6PIY5 440 aa8.57□□□□□ -1.04
SCN1A-207ENST00000507401 LEKR1Q6ZMV7 388 aa8.57□□□□□ -1.04
SCN1A-207ENST00000507401 GAREM2Q75VX8 874 aa8.57□□□□□ -1.04
SCN1A-207ENST00000507401 TRAPPC11Q7Z392 1133 aa8.57□□□□□ -1.04
SCN1A-207ENST00000507401 CCDC91Q7Z6B0 441 aa8.57□□□□□ -1.04
SCN1A-207ENST00000507401 CBWD2Q8IUF1 395 aa8.57□□□□□ -1.04
SCN1A-207ENST00000507401 OR5B17Q8NGF7 314 aa8.57□□□□□ -1.04
SCN1A-207ENST00000507401 CLDN23Q96B33 292 aa8.57□□□□□ -1.04
SCN1A-207ENST00000507401 PAGE5Q96GU1 130 aa8.57□□□□□ -1.04
SCN1A-207ENST00000507401 HPDLQ96IR7 371 aa8.57□□□□□ -1.04
SCN1A-207ENST00000507401 SPATA32Q96LK8 384 aa8.57□□□□□ -1.04
SCN1A-207ENST00000507401 CEP295NLQ96MC4 621 aa8.57□□□□□ -1.04
SCN1A-207ENST00000507401 BCO2Q9BYV7 579 aa8.57□□□□□ -1.04
SCN1A-207ENST00000507401 UBXN6Q9BZV1 441 aa8.57□□□□□ -1.04
SCN1A-207ENST00000507401 BLZF1Q9H2G9 400 aa8.57□□□□□ -1.04
SCN1A-207ENST00000507401 CLSTN2Q9H4D0 955 aa8.57□□□□□ -1.04
SCN1A-207ENST00000507401 TASP1Q9H6P5 420 aa8.57□□□□□ -1.04
SCN1A-207ENST00000507401 BRD9Q9H8M2 597 aa8.57□□□□□ -1.04
SCN1A-207ENST00000507401 DDX43Q9NXZ2 648 aaKnown RBP8.57□□□□□ -1.04
SCN1A-207ENST00000507401 OBP2AQ9NY56 170 aa8.57□□□□□ -1.04
SCN1A-207ENST00000507401 SERTAD1Q9UHV2 236 aa8.57□□□□□ -1.04
SCN1A-207ENST00000507401 SIX4Q9UIU6 781 aa8.57□□□□□ -1.04
SCN1A-207ENST00000507401 L1RE1Q9UN81 338 aa8.57□□□□□ -1.04
SCN1A-207ENST00000507401 HPSEQ9Y251 543 aa8.57□□□□□ -1.04
SCN1A-207ENST00000507401 SNX9Q9Y5X1 595 aa8.57□□□□□ -1.04
SCN1A-207ENST00000507401 A0A1W2PQ27 194 aa8.56□□□□□ -1.04
SCN1A-207ENST00000507401 A0A1W2PQ64 194 aa8.56□□□□□ -1.04
SCN1A-207ENST00000507401 A0A1W2PQD8 194 aa8.56□□□□□ -1.04
SCN1A-207ENST00000507401 A0A1W2PRU2 124 aa8.56□□□□□ -1.04
SCN1A-207ENST00000507401 FAM170BA6NMN3 283 aa8.56□□□□□ -1.04
SCN1A-207ENST00000507401 ZNF263O14978 683 aa8.56□□□□□ -1.04
SCN1A-207ENST00000507401 CHADO15335 359 aa8.56□□□□□ -1.04
SCN1A-207ENST00000507401 KLRC4O43908 158 aa8.56□□□□□ -1.04
SCN1A-207ENST00000507401 STAU1O95793 577 aaKnown RBP8.56□□□□□ -1.04
SCN1A-207ENST00000507401 PNMA6AP0CW24 399 aaPredicted RBP8.56□□□□□ -1.04
SCN1A-207ENST00000507401 GJA1P17302 382 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms