RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 TMEM150AQ86TG1 271 aa19.2■□□□□ 0.66
SQSTM1-209ENST00000504627 FAM114A1Q8IWE2 563 aa19.2■□□□□ 0.66
SQSTM1-209ENST00000504627 ATRIPQ8WXE1 791 aa19.2■□□□□ 0.66
SQSTM1-209ENST00000504627 ANP32BQ92688 251 aaKnown RBP19.2■□□□□ 0.66
SQSTM1-209ENST00000504627 HINFPQ9BQA5 517 aa19.2■□□□□ 0.66
SQSTM1-209ENST00000504627 GTSE1Q9NYZ3 720 aa19.2■□□□□ 0.66
SQSTM1-209ENST00000504627 GNL1P36915 607 aaPredicted RBP19.19■□□□□ 0.66
SQSTM1-209ENST00000504627 CYP27A1Q02318 531 aa19.19■□□□□ 0.66
SQSTM1-209ENST00000504627 PPP2R5DQ14738 602 aa19.19■□□□□ 0.66
SQSTM1-209ENST00000504627 LIMS2Q7Z4I7 341 aa19.19■□□□□ 0.66
SQSTM1-209ENST00000504627 RALGPS2Q86X27 583 aaPredicted RBP19.19■□□□□ 0.66
SQSTM1-209ENST00000504627 OR6B3Q8NGW1 331 aa19.19■□□□□ 0.66
SQSTM1-209ENST00000504627 MYLPFQ96A32 169 aa19.19■□□□□ 0.66
SQSTM1-209ENST00000504627 TRMT2BQ96GJ1 504 aaKnown RBP19.19■□□□□ 0.66
SQSTM1-209ENST00000504627 CEP63Q96MT8 703 aa19.19■□□□□ 0.66
SQSTM1-209ENST00000504627 CHRDQ9H2X0 955 aa19.19■□□□□ 0.66
SQSTM1-209ENST00000504627 TRPC7Q9HCX4 862 aa19.19■□□□□ 0.66
SQSTM1-209ENST00000504627 SAMSN1Q9NSI8 373 aaKnown RBP19.19■□□□□ 0.66
SQSTM1-209ENST00000504627 TDP1Q9NUW8 608 aa19.19■□□□□ 0.66
SQSTM1-209ENST00000504627 CFAP54Q96N23 3096 aa19.19■□□□□ 0.66
SQSTM1-209ENST00000504627 SOBPA7XYQ1 873 aa19.18■□□□□ 0.66
SQSTM1-209ENST00000504627 SPECC1L-ADORA2AF8WAN1 911 aa19.18■□□□□ 0.66
SQSTM1-209ENST00000504627 NOL4O94818 638 aa19.18■□□□□ 0.66
SQSTM1-209ENST00000504627 BDNFP23560 247 aa19.18■□□□□ 0.66
SQSTM1-209ENST00000504627 EEF1GP26641 437 aaKnown RBP19.18■□□□□ 0.66
SQSTM1-209ENST00000504627 GRIK1P39086 918 aa19.18■□□□□ 0.66
SQSTM1-209ENST00000504627 MAGEA11P43364 429 aa19.18■□□□□ 0.66
SQSTM1-209ENST00000504627 BIRC3Q13489 604 aa19.18■□□□□ 0.66
SQSTM1-209ENST00000504627 LRRC32Q14392 662 aa19.18■□□□□ 0.66
SQSTM1-209ENST00000504627 TSSK4Q6SA08 328 aa19.18■□□□□ 0.66
SQSTM1-209ENST00000504627 VSTM1Q6UX27 236 aa19.18■□□□□ 0.66
SQSTM1-209ENST00000504627 MON1AQ86VX9 555 aa19.18■□□□□ 0.66
SQSTM1-209ENST00000504627 ZNF687Q8N1G0 1237 aa19.18■□□□□ 0.66
SQSTM1-209ENST00000504627 ANKRD20A12PQ8NF67 263 aa19.18■□□□□ 0.66
SQSTM1-209ENST00000504627 TMEM174Q8WUU8 243 aa19.18■□□□□ 0.66
SQSTM1-209ENST00000504627 ZNF516Q92618 1163 aa19.18■□□□□ 0.66
SQSTM1-209ENST00000504627 IER2Q9BTL4 223 aa19.18■□□□□ 0.66
SQSTM1-209ENST00000504627 KIF9Q9HAQ2 790 aa19.18■□□□□ 0.66
SQSTM1-209ENST00000504627 CRTAC1Q9NQ79 661 aa19.18■□□□□ 0.66
SQSTM1-209ENST00000504627 NXF1Q9UBU9 619 aaKnown RBP19.18■□□□□ 0.66
SQSTM1-209ENST00000504627 PCDHGA2Q9Y5H1 932 aa19.18■□□□□ 0.66
SQSTM1-209ENST00000504627 NUP210Q8TEM1 1887 aaPredicted RBP19.18■□□□□ 0.66
SQSTM1-209ENST00000504627 TACC1O75410 805 aa19.17■□□□□ 0.66
SQSTM1-209ENST00000504627 CHRNB1P11230 501 aa19.17■□□□□ 0.66
SQSTM1-209ENST00000504627 ATP1A3P13637 1013 aa19.17■□□□□ 0.66
SQSTM1-209ENST00000504627 RPL13P26373 211 aaKnown RBP19.17■□□□□ 0.66
SQSTM1-209ENST00000504627 ANXA13P27216 316 aa19.17■□□□□ 0.66
SQSTM1-209ENST00000504627 ATICP31939 592 aa19.17■□□□□ 0.66
SQSTM1-209ENST00000504627 CTHP32929 405 aa19.17■□□□□ 0.66
SQSTM1-209ENST00000504627 CASP4P49662 377 aa19.17■□□□□ 0.66
SQSTM1-209ENST00000504627 MYL6P60660 151 aa19.17■□□□□ 0.66
SQSTM1-209ENST00000504627 TNK2Q07912 1038 aa19.17■□□□□ 0.66
SQSTM1-209ENST00000504627 ITPRIPL2Q3MIP1 535 aa19.17■□□□□ 0.66
SQSTM1-209ENST00000504627 CC2D1AQ6P1N0 951 aaPredicted RBP19.17■□□□□ 0.66
SQSTM1-209ENST00000504627 TTC16Q8NEE8 873 aa19.17■□□□□ 0.66
SQSTM1-209ENST00000504627 USP13Q92995 863 aaPredicted RBP19.17■□□□□ 0.66
SQSTM1-209ENST00000504627 MYRFLQ96LU7 910 aa19.17■□□□□ 0.66
SQSTM1-209ENST00000504627 MRPL45Q9BRJ2 306 aaKnown RBP19.17■□□□□ 0.66
SQSTM1-209ENST00000504627 SRRTQ9BXP5 876 aaKnown RBP19.17■□□□□ 0.66
SQSTM1-209ENST00000504627 PRMT8Q9NR22 394 aaPredicted RBP19.17■□□□□ 0.66
SQSTM1-209ENST00000504627 GKN1Q9NS71 199 aa19.17■□□□□ 0.66
SQSTM1-209ENST00000504627 ZSCAN32Q9NX65 697 aa19.17■□□□□ 0.66
SQSTM1-209ENST00000504627 CCL26Q9Y258 94 aa19.17■□□□□ 0.66
SQSTM1-209ENST00000504627 A8MXQ7 604 aa19.16■□□□□ 0.66
SQSTM1-209ENST00000504627 CETN3O15182 167 aa19.16■□□□□ 0.66
SQSTM1-209ENST00000504627 GNA14O95837 355 aa19.16■□□□□ 0.66
SQSTM1-209ENST00000504627 NR3C1P04150 777 aa19.16■□□□□ 0.66
SQSTM1-209ENST00000504627 FAM163BP0C2L3 166 aa19.16■□□□□ 0.66
SQSTM1-209ENST00000504627 NR2F2P24468 414 aa19.16■□□□□ 0.66
SQSTM1-209ENST00000504627 CCR3P51677 355 aa19.16■□□□□ 0.66
SQSTM1-209ENST00000504627 AP3M2P53677 418 aa19.16■□□□□ 0.66
SQSTM1-209ENST00000504627 FANCCQ00597 558 aa19.16■□□□□ 0.66
SQSTM1-209ENST00000504627 MDH1BQ5I0G3 518 aa19.16■□□□□ 0.66
SQSTM1-209ENST00000504627 TXNDC11Q6PKC3 985 aa19.16■□□□□ 0.66
SQSTM1-209ENST00000504627 SLC9A9Q8IVB4 645 aa19.16■□□□□ 0.66
SQSTM1-209ENST00000504627 MYCBPAPQ8TBZ2 947 aa19.16■□□□□ 0.66
SQSTM1-209ENST00000504627 PCED1BQ96HM7 432 aa19.16■□□□□ 0.66
SQSTM1-209ENST00000504627 COL4A2P08572 1712 aa19.16■□□□□ 0.66
SQSTM1-209ENST00000504627 TRAV19A0A0A6YYK7 116 aa19.15■□□□□ 0.66
SQSTM1-209ENST00000504627 LRRIQ3A6PVS8 624 aaPredicted RBP19.15■□□□□ 0.66
SQSTM1-209ENST00000504627 KCNJ18B7U540 433 aa19.15■□□□□ 0.66
SQSTM1-209ENST00000504627 TRIM66O15016 1216 aa19.15■□□□□ 0.66
SQSTM1-209ENST00000504627 SLC16A3O15427 465 aaKnown RBP19.15■□□□□ 0.66
SQSTM1-209ENST00000504627 CBFA2T2O43439 604 aa19.15■□□□□ 0.66
SQSTM1-209ENST00000504627 STAU1O95793 577 aaKnown RBP19.15■□□□□ 0.66
SQSTM1-209ENST00000504627 CKMP06732 381 aa19.15■□□□□ 0.66
SQSTM1-209ENST00000504627 CDK11BP21127 795 aaKnown RBP19.15■□□□□ 0.66
SQSTM1-209ENST00000504627 NRLP54845 237 aa19.15■□□□□ 0.66
SQSTM1-209ENST00000504627 KCNJ12Q14500 433 aa19.15■□□□□ 0.66
SQSTM1-209ENST00000504627 PON2Q15165 354 aa19.15■□□□□ 0.66
SQSTM1-209ENST00000504627 ZNF699Q32M78 642 aa19.15■□□□□ 0.66
SQSTM1-209ENST00000504627 TCP11X2Q5H9J9 407 aa19.15■□□□□ 0.66
SQSTM1-209ENST00000504627 DGKKQ5KSL6 1271 aa19.15■□□□□ 0.66
SQSTM1-209ENST00000504627 DENND5BQ6ZUT9 1274 aa19.15■□□□□ 0.66
SQSTM1-209ENST00000504627 IRF2BP1Q8IU81 584 aa19.15■□□□□ 0.66
SQSTM1-209ENST00000504627 PARD3BQ8TEW8 1205 aa19.15■□□□□ 0.66
SQSTM1-209ENST00000504627 SPATA17Q96L03 361 aa19.15■□□□□ 0.66
SQSTM1-209ENST00000504627 CNOT6LQ96LI5 555 aaKnown RBP19.15■□□□□ 0.66
SQSTM1-209ENST00000504627 CEP295NLQ96MC4 621 aa19.15■□□□□ 0.66
SQSTM1-209ENST00000504627 FAM126AQ9BYI3 521 aaPredicted RBP19.15■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms