RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 DRAP1Q14919 205 aaPredicted RBP10.65□□□□□ -0.7
NUP54-203ENST00000504173 FAM171BQ6P995 826 aa10.65□□□□□ -0.7
NUP54-203ENST00000504173 LILRA6Q6PI73 481 aa10.65□□□□□ -0.7
NUP54-203ENST00000504173 C4orf50Q6ZRC1 276 aa10.65□□□□□ -0.7
NUP54-203ENST00000504173 SPATA31D4Q6ZUB0 917 aa10.65□□□□□ -0.7
NUP54-203ENST00000504173 CACNA2D4Q7Z3S7 1137 aa10.65□□□□□ -0.7
NUP54-203ENST00000504173 CRYBG2Q8N1P7 616 aa10.65□□□□□ -0.7
NUP54-203ENST00000504173 SLC4A11Q8NBS3 891 aa10.65□□□□□ -0.7
NUP54-203ENST00000504173 ATAD1Q8NBU5 361 aa10.65□□□□□ -0.7
NUP54-203ENST00000504173 RBBP8NLQ8NC74 664 aaPredicted RBP10.65□□□□□ -0.7
NUP54-203ENST00000504173 FLCNQ8NFG4 579 aa10.65□□□□□ -0.7
NUP54-203ENST00000504173 SPPL2BQ8TCT7 592 aa10.65□□□□□ -0.7
NUP54-203ENST00000504173 C2orf15Q8WU43 125 aaKnown RBP10.65□□□□□ -0.7
NUP54-203ENST00000504173 SHC3Q92529 594 aa10.65□□□□□ -0.7
NUP54-203ENST00000504173 CASP10Q92851 521 aa10.65□□□□□ -0.7
NUP54-203ENST00000504173 PCED1BQ96HM7 432 aa10.65□□□□□ -0.7
NUP54-203ENST00000504173 HEXIM2Q96MH2 286 aaKnown RBP10.65□□□□□ -0.7
NUP54-203ENST00000504173 SPAG5Q96R06 1193 aa10.65□□□□□ -0.7
NUP54-203ENST00000504173 PKMYT1Q99640 499 aa10.65□□□□□ -0.7
NUP54-203ENST00000504173 LPIN3Q9BQK8 851 aa10.65□□□□□ -0.7
NUP54-203ENST00000504173 MED10Q9BTT4 135 aa10.65□□□□□ -0.7
NUP54-203ENST00000504173 NAA15Q9BXJ9 866 aaKnown RBP10.65□□□□□ -0.7
NUP54-203ENST00000504173 STK33Q9BYT3 514 aa10.65□□□□□ -0.7
NUP54-203ENST00000504173 SMOC2Q9H3U7 446 aa10.65□□□□□ -0.7
NUP54-203ENST00000504173 CYP4F11Q9HBI6 524 aa10.65□□□□□ -0.7
NUP54-203ENST00000504173 NLRC4Q9NPP4 1024 aa10.65□□□□□ -0.7
NUP54-203ENST00000504173 MAN1C1Q9NR34 630 aa10.65□□□□□ -0.7
NUP54-203ENST00000504173 TMLHEQ9NVH6 421 aa10.65□□□□□ -0.7
NUP54-203ENST00000504173 CEP72Q9P209 647 aa10.65□□□□□ -0.7
NUP54-203ENST00000504173 DPP7Q9UHL4 492 aa10.65□□□□□ -0.7
NUP54-203ENST00000504173 FBXW11Q9UKB1 542 aa10.65□□□□□ -0.7
NUP54-203ENST00000504173 PCDHB5Q9Y5E4 795 aa10.65□□□□□ -0.7
NUP54-203ENST00000504173 ATP8B3O60423 1300 aa10.64□□□□□ -0.71
NUP54-203ENST00000504173 F8VZ95 297 aa10.64□□□□□ -0.71
NUP54-203ENST00000504173 FOXN3O00409 490 aaPredicted RBP10.64□□□□□ -0.71
NUP54-203ENST00000504173 AP5Z1O43299 807 aa10.64□□□□□ -0.71
NUP54-203ENST00000504173 C1RP00736 705 aa10.64□□□□□ -0.71
NUP54-203ENST00000504173 C8AP07357 584 aa10.64□□□□□ -0.71
NUP54-203ENST00000504173 PAEPP09466 180 aa10.64□□□□□ -0.71
NUP54-203ENST00000504173 CCDC130P13994 396 aa10.64□□□□□ -0.71
NUP54-203ENST00000504173 PBX1P40424 430 aa10.64□□□□□ -0.71
NUP54-203ENST00000504173 ZNF132P52740 706 aa10.64□□□□□ -0.71
NUP54-203ENST00000504173 SHC2P98077 582 aa10.64□□□□□ -0.71
NUP54-203ENST00000504173 DUSP4Q13115 394 aa10.64□□□□□ -0.71
NUP54-203ENST00000504173 SGO2Q562F6 1265 aa10.64□□□□□ -0.71
NUP54-203ENST00000504173 CCDC149Q6ZUS6 474 aa10.64□□□□□ -0.71
NUP54-203ENST00000504173 C12orf29Q8N999 325 aa10.64□□□□□ -0.71
NUP54-203ENST00000504173 VN1R2Q8NFZ6 395 aa10.64□□□□□ -0.71
NUP54-203ENST00000504173 SLC7A14Q8TBB6 771 aa10.64□□□□□ -0.71
NUP54-203ENST00000504173 FUBP3Q96I24 572 aaKnown RBP eCLIP10.64□□□□□ -0.71
NUP54-203ENST00000504173 SEPT5Q99719 369 aaPredicted RBP10.64□□□□□ -0.71
NUP54-203ENST00000504173 NUP58Q9BVL2 599 aa10.64□□□□□ -0.71
NUP54-203ENST00000504173 B3GNT5Q9BYG0 378 aa10.64□□□□□ -0.71
NUP54-203ENST00000504173 PLEKHA4Q9H4M7 779 aa10.64□□□□□ -0.71
NUP54-203ENST00000504173 FAM49BQ9NUQ9 324 aa10.64□□□□□ -0.71
NUP54-203ENST00000504173 DZANK1Q9NVP4 752 aa10.64□□□□□ -0.71
NUP54-203ENST00000504173 MAFFQ9ULX9 164 aa10.64□□□□□ -0.71
NUP54-203ENST00000504173 CNTN6Q9UQ52 1028 aa10.64□□□□□ -0.71
NUP54-203ENST00000504173 HELZ2Q9BYK8 2649 aaKnown RBP10.64□□□□□ -0.71
NUP54-203ENST00000504173 ITIH6Q6UXX5 1313 aa10.63□□□□□ -0.71
NUP54-203ENST00000504173 NAV2Q8IVL1 2488 aa10.63□□□□□ -0.71
NUP54-203ENST00000504173 C2CD4DB7Z1M9 353 aa10.63□□□□□ -0.71
NUP54-203ENST00000504173 RNF225M0QZC1 329 aaPredicted RBP10.63□□□□□ -0.71
NUP54-203ENST00000504173 CLDN5O00501 218 aa10.63□□□□□ -0.71
NUP54-203ENST00000504173 CYP26A1O43174 497 aa10.63□□□□□ -0.71
NUP54-203ENST00000504173 SEC24AO95486 1093 aa10.63□□□□□ -0.71
NUP54-203ENST00000504173 VNN2O95498 520 aa10.63□□□□□ -0.71
NUP54-203ENST00000504173 PNMA6AP0CW24 399 aaPredicted RBP10.63□□□□□ -0.71
NUP54-203ENST00000504173 VDRP11473 427 aa10.63□□□□□ -0.71
NUP54-203ENST00000504173 BDNFP23560 247 aa10.63□□□□□ -0.71
NUP54-203ENST00000504173 CYP2F1P24903 491 aa10.63□□□□□ -0.71
NUP54-203ENST00000504173 ADORA2BP29275 332 aa10.63□□□□□ -0.71
NUP54-203ENST00000504173 STAT1P42224 750 aa10.63□□□□□ -0.71
NUP54-203ENST00000504173 TUFMP49411 452 aaKnown RBP10.63□□□□□ -0.71
NUP54-203ENST00000504173 KCNC3Q14003 757 aa10.63□□□□□ -0.71
NUP54-203ENST00000504173 MGAT5BQ3V5L5 792 aa10.63□□□□□ -0.71
NUP54-203ENST00000504173 CFAP221Q4G0U5 840 aa10.63□□□□□ -0.71
NUP54-203ENST00000504173 FIGNQ5HY92 759 aa10.63□□□□□ -0.71
NUP54-203ENST00000504173 PPM1LQ5SGD2 360 aa10.63□□□□□ -0.71
NUP54-203ENST00000504173 SMYD5Q6GMV2 418 aa10.63□□□□□ -0.71
NUP54-203ENST00000504173 FAM35AQ86V20 835 aa10.63□□□□□ -0.71
NUP54-203ENST00000504173 VSTM4Q8IW00 320 aa10.63□□□□□ -0.71
NUP54-203ENST00000504173 SCN4BQ8IWT1 228 aa10.63□□□□□ -0.71
NUP54-203ENST00000504173 TCEAL8Q8IYN2 117 aa10.63□□□□□ -0.71
NUP54-203ENST00000504173 FAM71AQ8IYT1 594 aa10.63□□□□□ -0.71
NUP54-203ENST00000504173 TTC9BQ8N6N2 239 aa10.63□□□□□ -0.71
NUP54-203ENST00000504173 SLC2A14Q8TDB8 520 aa10.63□□□□□ -0.71
NUP54-203ENST00000504173 HDAC7Q8WUI4 952 aa10.63□□□□□ -0.71
NUP54-203ENST00000504173 IQCDQ96DY2 449 aa10.63□□□□□ -0.71
NUP54-203ENST00000504173 CYFIP2Q96F07 1278 aa10.63□□□□□ -0.71
NUP54-203ENST00000504173 SMARCD1Q96GM5 515 aa10.63□□□□□ -0.71
NUP54-203ENST00000504173 RHOBTB2Q9BYZ6 727 aa10.63□□□□□ -0.71
NUP54-203ENST00000504173 ZNF518BQ9C0D4 1074 aa10.63□□□□□ -0.71
NUP54-203ENST00000504173 GPR88Q9GZN0 384 aa10.63□□□□□ -0.71
NUP54-203ENST00000504173 CRISPLD1Q9H336 500 aa10.63□□□□□ -0.71
NUP54-203ENST00000504173 SFXN1Q9H9B4 322 aa10.63□□□□□ -0.71
NUP54-203ENST00000504173 ABCB6Q9NP58 842 aa10.63□□□□□ -0.71
NUP54-203ENST00000504173 KRT82Q9NSB4 513 aa10.63□□□□□ -0.71
NUP54-203ENST00000504173 HSFX1Q9UBD0 423 aa10.63□□□□□ -0.71
NUP54-203ENST00000504173 ANGPTL2Q9UKU9 493 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms