RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 MYMKA6NI61 221 aa15.29■□□□□ 0.04
PRPF40A-211ENST00000493468 SGK1O00141 431 aa15.29■□□□□ 0.04
PRPF40A-211ENST00000493468 KLF8O95600 359 aaPredicted RBP15.29■□□□□ 0.04
PRPF40A-211ENST00000493468 CYP17A1P05093 508 aa15.29■□□□□ 0.04
PRPF40A-211ENST00000493468 CD59P13987 128 aa15.29■□□□□ 0.04
PRPF40A-211ENST00000493468 HDCP19113 662 aa15.29■□□□□ 0.04
PRPF40A-211ENST00000493468 MAGEA11P43364 429 aa15.29■□□□□ 0.04
PRPF40A-211ENST00000493468 KIR2DL1P43626 348 aaPredicted RBP15.29■□□□□ 0.04
PRPF40A-211ENST00000493468 SLC14A1Q13336 389 aa15.29■□□□□ 0.04
PRPF40A-211ENST00000493468 TMEM119Q4V9L6 283 aa15.29■□□□□ 0.04
PRPF40A-211ENST00000493468 SLC36A4Q6YBV0 504 aa15.29■□□□□ 0.04
PRPF40A-211ENST00000493468 TMEM86AQ8N2M4 240 aa15.29■□□□□ 0.04
PRPF40A-211ENST00000493468 PDCL2Q8N4E4 241 aa15.29■□□□□ 0.04
PRPF40A-211ENST00000493468 MINDY1Q8N5J2 469 aa15.29■□□□□ 0.04
PRPF40A-211ENST00000493468 FRMD1Q8N878 549 aa15.29■□□□□ 0.04
PRPF40A-211ENST00000493468 TTC16Q8NEE8 873 aa15.29■□□□□ 0.04
PRPF40A-211ENST00000493468 CEP295NLQ96MC4 621 aa15.29■□□□□ 0.04
PRPF40A-211ENST00000493468 PNKPQ96T60 521 aa15.29■□□□□ 0.04
PRPF40A-211ENST00000493468 REEP2Q9BRK0 252 aa15.29■□□□□ 0.04
PRPF40A-211ENST00000493468 GTPBP2Q9BX10 602 aaKnown RBP15.29■□□□□ 0.04
PRPF40A-211ENST00000493468 BCCIPQ9P287 314 aaKnown RBP eCLIP15.29■□□□□ 0.04
PRPF40A-211ENST00000493468 STYXL1Q9Y6J8 313 aa15.29■□□□□ 0.04
PRPF40A-211ENST00000493468 NPHP3-ACAD11A0A0J9YXS1 232 aa15.28■□□□□ 0.04
PRPF40A-211ENST00000493468 LEFTY2O00292 366 aa15.28■□□□□ 0.04
PRPF40A-211ENST00000493468 ARHGAP33O14559 1287 aa15.28■□□□□ 0.04
PRPF40A-211ENST00000493468 SLC9A3R1O14745 358 aaPredicted RBP15.28■□□□□ 0.04
PRPF40A-211ENST00000493468 KAT7O95251 611 aa15.28■□□□□ 0.04
PRPF40A-211ENST00000493468 APODP05090 189 aa15.28■□□□□ 0.04
PRPF40A-211ENST00000493468 ACOT2P49753 483 aa15.28■□□□□ 0.04
PRPF40A-211ENST00000493468 HMGN5P82970 282 aaKnown RBP15.28■□□□□ 0.04
PRPF40A-211ENST00000493468 ZXDBP98169 803 aa15.28■□□□□ 0.04
PRPF40A-211ENST00000493468 GTF2BQ00403 316 aa15.28■□□□□ 0.04
PRPF40A-211ENST00000493468 MYL7Q01449 175 aa15.28■□□□□ 0.04
PRPF40A-211ENST00000493468 ZRSR1Q15695 479 aaKnown RBP15.28■□□□□ 0.04
PRPF40A-211ENST00000493468 COL28A1Q2UY09 1125 aa15.28■□□□□ 0.04
PRPF40A-211ENST00000493468 SLFN12LQ6IEE8 588 aa15.28■□□□□ 0.04
PRPF40A-211ENST00000493468 C19orf48Q6RUI8 117 aa15.28■□□□□ 0.04
PRPF40A-211ENST00000493468 PIAS4Q8N2W9 510 aaPredicted RBP15.28■□□□□ 0.04
PRPF40A-211ENST00000493468 LRRC15Q8TF66 581 aa15.28■□□□□ 0.04
PRPF40A-211ENST00000493468 HMGB4Q8WW32 186 aa15.28■□□□□ 0.04
PRPF40A-211ENST00000493468 CCDC86Q9H6F5 360 aaKnown RBP15.28■□□□□ 0.04
PRPF40A-211ENST00000493468 PARVGQ9HBI0 331 aa15.28■□□□□ 0.04
PRPF40A-211ENST00000493468 SCUBE2Q9NQ36 999 aa15.28■□□□□ 0.04
PRPF40A-211ENST00000493468 EIF4ENIF1Q9NRA8 985 aaKnown RBP15.28■□□□□ 0.04
PRPF40A-211ENST00000493468 DDX43Q9NXZ2 648 aaKnown RBP15.28■□□□□ 0.04
PRPF40A-211ENST00000493468 CIZ1Q9ULV3 898 aaPredicted RBP15.28■□□□□ 0.04
PRPF40A-211ENST00000493468 L1RE1Q9UN81 338 aa15.28■□□□□ 0.04
PRPF40A-211ENST00000493468 TCRBV21S2A2A0A5A6 115 aa15.27■□□□□ 0.04
PRPF40A-211ENST00000493468 PALM2-AKAP2B1ALY0 433 aaPredicted RBP15.27■□□□□ 0.04
PRPF40A-211ENST00000493468 SLC26A4O43511 780 aa15.27■□□□□ 0.04
PRPF40A-211ENST00000493468 ADAM23O75077 832 aa15.27■□□□□ 0.04
PRPF40A-211ENST00000493468 GJB3O75712 270 aa15.27■□□□□ 0.04
PRPF40A-211ENST00000493468 IL18RAPO95256 599 aa15.27■□□□□ 0.04
PRPF40A-211ENST00000493468 SYPP08247 313 aa15.27■□□□□ 0.04
PRPF40A-211ENST00000493468 TIE1P35590 1138 aa15.27■□□□□ 0.04
PRPF40A-211ENST00000493468 TNFRSF4P43489 277 aa15.27■□□□□ 0.04
PRPF40A-211ENST00000493468 NEK4P51957 841 aa15.27■□□□□ 0.04
PRPF40A-211ENST00000493468 SLC7A9P82251 487 aa15.27■□□□□ 0.04
PRPF40A-211ENST00000493468 DHCR24Q15392 516 aa15.27■□□□□ 0.04
PRPF40A-211ENST00000493468 ADALQ6DHV7 355 aa15.27■□□□□ 0.04
PRPF40A-211ENST00000493468 CCNI2Q6ZMN8 369 aaPredicted RBP15.27■□□□□ 0.04
PRPF40A-211ENST00000493468 FILIP1Q7Z7B0 1213 aa15.27■□□□□ 0.04
PRPF40A-211ENST00000493468 ADGRG2Q8IZP9 1017 aa15.27■□□□□ 0.04
PRPF40A-211ENST00000493468 MYCT1Q8N699 235 aa15.27■□□□□ 0.04
PRPF40A-211ENST00000493468 KCNV2Q8TDN2 545 aa15.27■□□□□ 0.04
PRPF40A-211ENST00000493468 CDK5RAP3Q96JB5 506 aa15.27■□□□□ 0.04
PRPF40A-211ENST00000493468 SPATA17Q96L03 361 aa15.27■□□□□ 0.04
PRPF40A-211ENST00000493468 FIZ1Q96SL8 496 aa15.27■□□□□ 0.04
PRPF40A-211ENST00000493468 AGO2Q9UKV8 859 aaKnown RBP15.27■□□□□ 0.04
PRPF40A-211ENST00000493468 A0A1W2PQD8 194 aa15.26■□□□□ 0.03
PRPF40A-211ENST00000493468 ANKRD63C9JTQ0 380 aa15.26■□□□□ 0.03
PRPF40A-211ENST00000493468 TRAK2O60296 914 aa15.26■□□□□ 0.03
PRPF40A-211ENST00000493468 HUS1O60921 280 aa15.26■□□□□ 0.03
PRPF40A-211ENST00000493468 FAM13AO94988 1023 aa15.26■□□□□ 0.03
PRPF40A-211ENST00000493468 SEC24BO95487 1268 aa15.26■□□□□ 0.03
PRPF40A-211ENST00000493468 OLFM2O95897 454 aa15.26■□□□□ 0.03
PRPF40A-211ENST00000493468 ADH1CP00326 375 aa15.26■□□□□ 0.03
PRPF40A-211ENST00000493468 FTH1P19P0C7X4 201 aa15.26■□□□□ 0.03
PRPF40A-211ENST00000493468 PCSK1P29120 753 aa15.26■□□□□ 0.03
PRPF40A-211ENST00000493468 GRIA2P42262 883 aa15.26■□□□□ 0.03
PRPF40A-211ENST00000493468 ATP2C1P98194 919 aaPredicted RBP15.26■□□□□ 0.03
PRPF40A-211ENST00000493468 RPL6Q02878 288 aaKnown RBP15.26■□□□□ 0.03
PRPF40A-211ENST00000493468 ZNF33AQ06730 810 aa15.26■□□□□ 0.03
PRPF40A-211ENST00000493468 MESP2Q0VG99 397 aa15.26■□□□□ 0.03
PRPF40A-211ENST00000493468 RESTQ13127 1097 aa15.26■□□□□ 0.03
PRPF40A-211ENST00000493468 TRIP6Q15654 476 aaKnown RBP15.26■□□□□ 0.03
PRPF40A-211ENST00000493468 CRELD2Q6UXH1 353 aaPredicted RBP15.26■□□□□ 0.03
PRPF40A-211ENST00000493468 TRMT11Q7Z4G4 463 aaKnown RBP15.26■□□□□ 0.03
PRPF40A-211ENST00000493468 SPATA2LQ8IUW3 424 aaPredicted RBP15.26■□□□□ 0.03
PRPF40A-211ENST00000493468 SFTPA1Q8IWL2 248 aa15.26■□□□□ 0.03
PRPF40A-211ENST00000493468 LRRC52Q8N7C0 313 aa15.26■□□□□ 0.03
PRPF40A-211ENST00000493468 ST6GALNAC4Q9H4F1 302 aa15.26■□□□□ 0.03
PRPF40A-211ENST00000493468 FSCN3Q9NQT6 498 aa15.26■□□□□ 0.03
PRPF40A-211ENST00000493468 GDAP2Q9NXN4 497 aa15.26■□□□□ 0.03
PRPF40A-211ENST00000493468 DKK4Q9UBT3 224 aa15.26■□□□□ 0.03
PRPF40A-211ENST00000493468 GTF3C4Q9UKN8 822 aa15.26■□□□□ 0.03
PRPF40A-211ENST00000493468 GABRDO14764 452 aa15.25■□□□□ 0.03
PRPF40A-211ENST00000493468 ACAT1P24752 427 aaKnown RBP15.25■□□□□ 0.03
PRPF40A-211ENST00000493468 SLC6A11P48066 632 aa15.25■□□□□ 0.03
PRPF40A-211ENST00000493468 PPP3CCP48454 512 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms