RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	PIAS3	Q9Y6X2	628 aa		9.41	□□□□□ -0.9
USP4-213	ENST00000488520	FRY	Q5TBA9	3013 aa		9.41	□□□□□ -0.9
USP4-213	ENST00000488520	MYO18A	Q92614	2054 aa	Known RBP	9.41	□□□□□ -0.9
USP4-213	ENST00000488520	HELZ	P42694	1942 aa	Known RBP	9.41	□□□□□ -0.9
USP4-213	ENST00000488520	NCAN	O14594	1321 aa		9.4	□□□□□ -0.9
USP4-213	ENST00000488520	SMIM28	A0A1B0GU29	152 aa		9.4	□□□□□ -0.9
USP4-213	ENST00000488520	BICDL2	A1A5D9	508 aa		9.4	□□□□□ -0.9
USP4-213	ENST00000488520	ARHGEF37	A1IGU5	675 aa		9.4	□□□□□ -0.9
USP4-213	ENST00000488520	TMEM189-UBE2V1	I3L0A0	370 aa		9.4	□□□□□ -0.9
USP4-213	ENST00000488520	PDXK	O00764	312 aa		9.4	□□□□□ -0.9
USP4-213	ENST00000488520	ZNF197	O14709	1029 aa		9.4	□□□□□ -0.9
USP4-213	ENST00000488520	SLC30A4	O14863	429 aa		9.4	□□□□□ -0.9
USP4-213	ENST00000488520	KIAA0391	O15091	583 aa	Known RBP	9.4	□□□□□ -0.9
USP4-213	ENST00000488520	ABLIM3	O94929	683 aa		9.4	□□□□□ -0.9
USP4-213	ENST00000488520	RET	P07949	1114 aa		9.4	□□□□□ -0.9
USP4-213	ENST00000488520	MCF2	P10911	925 aa		9.4	□□□□□ -0.9
USP4-213	ENST00000488520	ATF2	P15336	505 aa		9.4	□□□□□ -0.9
USP4-213	ENST00000488520	PSMC3	P17980	439 aa		9.4	□□□□□ -0.9
USP4-213	ENST00000488520	HOXC13	P31276	330 aa		9.4	□□□□□ -0.9
USP4-213	ENST00000488520	CXCL12	P48061	93 aa		9.4	□□□□□ -0.9
USP4-213	ENST00000488520	CCR3	P51677	355 aa		9.4	□□□□□ -0.9
USP4-213	ENST00000488520	NLRP12	P59046	1061 aa		9.4	□□□□□ -0.9
USP4-213	ENST00000488520	GAS6	Q14393	721 aa		9.4	□□□□□ -0.9
USP4-213	ENST00000488520	PPP2R5D	Q14738	602 aa		9.4	□□□□□ -0.9
USP4-213	ENST00000488520	ZNF568	Q3ZCX4	644 aa		9.4	□□□□□ -0.9
USP4-213	ENST00000488520	C4orf17	Q53FE4	359 aa		9.4	□□□□□ -0.9
USP4-213	ENST00000488520	CYP4A22	Q5TCH4	519 aa		9.4	□□□□□ -0.9
USP4-213	ENST00000488520	ARMCX5	Q6P1M9	558 aa		9.4	□□□□□ -0.9
USP4-213	ENST00000488520	PRR23C	Q6ZRP0	262 aa		9.4	□□□□□ -0.9
USP4-213	ENST00000488520	RTL10	Q7L3V2	364 aa		9.4	□□□□□ -0.9
USP4-213	ENST00000488520	ARHGAP30	Q7Z6I6	1101 aa	Predicted RBP	9.4	□□□□□ -0.9
USP4-213	ENST00000488520	MAP4K3	Q8IVH8	894 aa		9.4	□□□□□ -0.9
USP4-213	ENST00000488520	DEPDC4	Q8N2C3	294 aa		9.4	□□□□□ -0.9
USP4-213	ENST00000488520	GUF1	Q8N442	669 aa	Known RBP	9.4	□□□□□ -0.9
USP4-213	ENST00000488520	TTC8	Q8TAM2	541 aa		9.4	□□□□□ -0.9
USP4-213	ENST00000488520	SPATA20	Q8TB22	786 aa		9.4	□□□□□ -0.9
USP4-213	ENST00000488520	NETO1	Q8TDF5	533 aa		9.4	□□□□□ -0.9
USP4-213	ENST00000488520	DHTKD1	Q96HY7	919 aa	Predicted RBP	9.4	□□□□□ -0.9
USP4-213	ENST00000488520	ACAP3	Q96P50	834 aa		9.4	□□□□□ -0.9
USP4-213	ENST00000488520	NAT10	Q9H0A0	1025 aa	Known RBP	9.4	□□□□□ -0.9
USP4-213	ENST00000488520	KIAA1586	Q9HCI6	787 aa		9.4	□□□□□ -0.9
USP4-213	ENST00000488520	AVEN	Q9NQS1	362 aa	Predicted RBP	9.4	□□□□□ -0.9
USP4-213	ENST00000488520	SEMA4G	Q9NTN9	838 aa		9.4	□□□□□ -0.9
USP4-213	ENST00000488520	RBM12	Q9NTZ6	932 aa	Known RBP	9.4	□□□□□ -0.9
USP4-213	ENST00000488520	ANO10	Q9NW15	660 aa		9.4	□□□□□ -0.9
USP4-213	ENST00000488520	RALY	Q9UKM9	306 aa	Known RBP	9.4	□□□□□ -0.9
USP4-213	ENST00000488520	INSL5	Q9Y5Q6	135 aa		9.4	□□□□□ -0.9
USP4-213	ENST00000488520	ZFHX4	Q86UP3	3567 aa		9.39	□□□□□ -0.91
USP4-213	ENST00000488520	SLC38A8	A6NNN8	435 aa		9.39	□□□□□ -0.91
USP4-213	ENST00000488520	TMEM229A	B2RXF0	380 aa		9.39	□□□□□ -0.91
USP4-213	ENST00000488520	PODXL	O00592	558 aa		9.39	□□□□□ -0.91
USP4-213	ENST00000488520	ZNF263	O14978	683 aa		9.39	□□□□□ -0.91
USP4-213	ENST00000488520	ATP9B	O43861	1147 aa		9.39	□□□□□ -0.91
USP4-213	ENST00000488520	MOSPD3	O75425	235 aa		9.39	□□□□□ -0.91
USP4-213	ENST00000488520	F11	P03951	625 aa		9.39	□□□□□ -0.91
USP4-213	ENST00000488520	CCDC192	P0DO97	292 aa		9.39	□□□□□ -0.91
USP4-213	ENST00000488520	CHRNB1	P11230	501 aa		9.39	□□□□□ -0.91
USP4-213	ENST00000488520	GART	P22102	1010 aa		9.39	□□□□□ -0.91
USP4-213	ENST00000488520	PRCP	P42785	496 aa		9.39	□□□□□ -0.91
USP4-213	ENST00000488520	SOX9	P48436	509 aa		9.39	□□□□□ -0.91
USP4-213	ENST00000488520	TWF1	Q12792	350 aa		9.39	□□□□□ -0.91
USP4-213	ENST00000488520	MORC3	Q14149	939 aa		9.39	□□□□□ -0.91
USP4-213	ENST00000488520	NOLC1	Q14978	699 aa	Known RBP eCLIP	9.39	□□□□□ -0.91
USP4-213	ENST00000488520	TEAD2	Q15562	447 aa		9.39	□□□□□ -0.91
USP4-213	ENST00000488520	CCDC6	Q16204	474 aa		9.39	□□□□□ -0.91
USP4-213	ENST00000488520	CTXN3	Q4LDR2	81 aa		9.39	□□□□□ -0.91
USP4-213	ENST00000488520	CT47A1	Q5JQC4	288 aa	Predicted RBP	9.39	□□□□□ -0.91
USP4-213	ENST00000488520	RNFT1	Q5M7Z0	435 aa		9.39	□□□□□ -0.91
USP4-213	ENST00000488520	SLC8B1	Q6J4K2	584 aa		9.39	□□□□□ -0.91
USP4-213	ENST00000488520	KLHL10	Q6JEL2	608 aa		9.39	□□□□□ -0.91
USP4-213	ENST00000488520	USP37	Q86T82	979 aa		9.39	□□□□□ -0.91
USP4-213	ENST00000488520	TCEAL8	Q8IYN2	117 aa		9.39	□□□□□ -0.91
USP4-213	ENST00000488520	ELMOD1	Q8N336	334 aa		9.39	□□□□□ -0.91
USP4-213	ENST00000488520	TMEM130	Q8N3G9	435 aa		9.39	□□□□□ -0.91
USP4-213	ENST00000488520	ZSCAN18	Q8TBC5	510 aa	Predicted RBP	9.39	□□□□□ -0.91
USP4-213	ENST00000488520	CSGALNACT1	Q8TDX6	532 aa		9.39	□□□□□ -0.91
USP4-213	ENST00000488520	SCFD1	Q8WVM8	642 aa		9.39	□□□□□ -0.91
USP4-213	ENST00000488520	SMARCD2	Q92925	531 aa		9.39	□□□□□ -0.91
USP4-213	ENST00000488520	KCNN1	Q92952	543 aa		9.39	□□□□□ -0.91
USP4-213	ENST00000488520	GLMN	Q92990	594 aa		9.39	□□□□□ -0.91
USP4-213	ENST00000488520	ZBTB45	Q96K62	511 aa	Predicted RBP	9.39	□□□□□ -0.91
USP4-213	ENST00000488520	ZNF512	Q96ME7	567 aa	Predicted RBP	9.39	□□□□□ -0.91
USP4-213	ENST00000488520	UROC1	Q96N76	676 aa		9.39	□□□□□ -0.91
USP4-213	ENST00000488520	FIZ1	Q96SL8	496 aa		9.39	□□□□□ -0.91
USP4-213	ENST00000488520	STRA6	Q9BX79	667 aa		9.39	□□□□□ -0.91
USP4-213	ENST00000488520	PCIF1	Q9H4Z3	704 aa		9.39	□□□□□ -0.91
USP4-213	ENST00000488520	SLITRK6	Q9H5Y7	841 aa		9.39	□□□□□ -0.91
USP4-213	ENST00000488520	RPF1	Q9H9Y2	349 aa	Known RBP	9.39	□□□□□ -0.91
USP4-213	ENST00000488520	TOPORS	Q9NS56	1045 aa	Predicted RBP	9.39	□□□□□ -0.91
USP4-213	ENST00000488520	CEP72	Q9P209	647 aa		9.39	□□□□□ -0.91
USP4-213	ENST00000488520	FBXL5	Q9UKA1	691 aa		9.39	□□□□□ -0.91
USP4-213	ENST00000488520	AGO2	Q9UKV8	859 aa	Known RBP	9.39	□□□□□ -0.91
USP4-213	ENST00000488520	FRMD4B	Q9Y2L6	1034 aa		9.39	□□□□□ -0.91
USP4-213	ENST00000488520	R3HCC1	Q9Y3T6	440 aa	Known RBP	9.39	□□□□□ -0.91
USP4-213	ENST00000488520	NUB1	Q9Y5A7	615 aa		9.39	□□□□□ -0.91
USP4-213	ENST00000488520	MYH10	P35580	1976 aa		9.39	□□□□□ -0.91
USP4-213	ENST00000488520	GON4L	Q3T8J9	2241 aa		9.38	□□□□□ -0.91
USP4-213	ENST00000488520	ASCC3	Q8N3C0	2202 aa	Known RBP	9.38	□□□□□ -0.91
USP4-213	ENST00000488520		A0A1B0GTH6	734 aa		9.38	□□□□□ -0.91
USP4-213	ENST00000488520	ZNF233	A6NK53	670 aa		9.38	□□□□□ -0.91

Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms