RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 C8AP07357 584 aa10.91□□□□□ -0.66
SKA1-204ENST00000488454 FAM200BP0CF97 657 aa10.91□□□□□ -0.66
SKA1-204ENST00000488454 HAPLN1P10915 354 aaPredicted RBP10.91□□□□□ -0.66
SKA1-204ENST00000488454 CCDC130P13994 396 aa10.91□□□□□ -0.66
SKA1-204ENST00000488454 FERP16591 822 aa10.91□□□□□ -0.66
SKA1-204ENST00000488454 NDUFV2P19404 249 aa10.91□□□□□ -0.66
SKA1-204ENST00000488454 CYP2F1P24903 491 aa10.91□□□□□ -0.66
SKA1-204ENST00000488454 GTF2F1P35269 517 aaKnown RBP eCLIP10.91□□□□□ -0.66
SKA1-204ENST00000488454 KRT9P35527 623 aa10.91□□□□□ -0.66
SKA1-204ENST00000488454 MAGEA11P43364 429 aa10.91□□□□□ -0.66
SKA1-204ENST00000488454 PDE6CP51160 858 aa10.91□□□□□ -0.66
SKA1-204ENST00000488454 ZNF132P52740 706 aa10.91□□□□□ -0.66
SKA1-204ENST00000488454 EPHB3P54753 998 aa10.91□□□□□ -0.66
SKA1-204ENST00000488454 ZBED6P86452 979 aa10.91□□□□□ -0.66
SKA1-204ENST00000488454 ARID5AQ03989 594 aa10.91□□□□□ -0.66
SKA1-204ENST00000488454 ADAM15Q13444 863 aa10.91□□□□□ -0.66
SKA1-204ENST00000488454 VEPH1Q14D04 833 aa10.91□□□□□ -0.66
SKA1-204ENST00000488454 CNGA2Q16280 664 aa10.91□□□□□ -0.66
SKA1-204ENST00000488454 MSS51Q4VC12 460 aa10.91□□□□□ -0.66
SKA1-204ENST00000488454 PPP1R26Q5T8A7 1209 aaPredicted RBP10.91□□□□□ -0.66
SKA1-204ENST00000488454 SFMBT2Q5VUG0 894 aa10.91□□□□□ -0.66
SKA1-204ENST00000488454 ARHGAP17Q68EM7 881 aa10.91□□□□□ -0.66
SKA1-204ENST00000488454 VSTM1Q6UX27 236 aa10.91□□□□□ -0.66
SKA1-204ENST00000488454 TMEM184AQ6ZMB5 413 aa10.91□□□□□ -0.66
SKA1-204ENST00000488454 TMC6Q7Z403 805 aa10.91□□□□□ -0.66
SKA1-204ENST00000488454 SCN4BQ8IWT1 228 aa10.91□□□□□ -0.66
SKA1-204ENST00000488454 ELMOD1Q8N336 334 aa10.91□□□□□ -0.66
SKA1-204ENST00000488454 SLC7A14Q8TBB6 771 aa10.91□□□□□ -0.66
SKA1-204ENST00000488454 PABPC5Q96DU9 382 aaKnown RBP10.91□□□□□ -0.66
SKA1-204ENST00000488454 SMARCD1Q96GM5 515 aa10.91□□□□□ -0.66
SKA1-204ENST00000488454 PKMYT1Q99640 499 aa10.91□□□□□ -0.66
SKA1-204ENST00000488454 HNRNPABQ99729 332 aaKnown RBP10.91□□□□□ -0.66
SKA1-204ENST00000488454 LPIN3Q9BQK8 851 aa10.91□□□□□ -0.66
SKA1-204ENST00000488454 PRDM9Q9NQV7 894 aa10.91□□□□□ -0.66
SKA1-204ENST00000488454 ZDHHC7Q9NXF8 308 aa10.91□□□□□ -0.66
SKA1-204ENST00000488454 FBXW11Q9UKB1 542 aa10.91□□□□□ -0.66
SKA1-204ENST00000488454 CEP83Q9Y592 693 aa10.91□□□□□ -0.66
SKA1-204ENST00000488454 CHD9Q3L8U1 2897 aa10.91□□□□□ -0.66
SKA1-204ENST00000488454 PLXNA4Q9HCM2 1894 aa10.91□□□□□ -0.66
SKA1-204ENST00000488454 MYO9BQ13459 2157 aa10.9□□□□□ -0.66
SKA1-204ENST00000488454 CCDC195A0A1B0GUA6 201 aa10.9□□□□□ -0.66
SKA1-204ENST00000488454 GOLGA6L6A8MZA4 724 aa10.9□□□□□ -0.66
SKA1-204ENST00000488454 XYLBO75191 536 aa10.9□□□□□ -0.66
SKA1-204ENST00000488454 HNRNPA1P09651 372 aaKnown RBP eCLIP10.9□□□□□ -0.66
SKA1-204ENST00000488454 PNMA6AP0CW24 399 aaPredicted RBP10.9□□□□□ -0.66
SKA1-204ENST00000488454 HOXB8P17481 243 aaPredicted RBP10.9□□□□□ -0.66
SKA1-204ENST00000488454 BRD2P25440 801 aaKnown RBP10.9□□□□□ -0.66
SKA1-204ENST00000488454 MRE11P49959 708 aa10.9□□□□□ -0.66
SKA1-204ENST00000488454 JAM2P57087 298 aa10.9□□□□□ -0.66
SKA1-204ENST00000488454 TWF1Q12792 350 aa10.9□□□□□ -0.66
SKA1-204ENST00000488454 ASIC2Q16515 512 aa10.9□□□□□ -0.66
SKA1-204ENST00000488454 LCLAT1Q6UWP7 414 aa10.9□□□□□ -0.66
SKA1-204ENST00000488454 ITIH5Q86UX2 942 aa10.9□□□□□ -0.66
SKA1-204ENST00000488454 FAM35AQ86V20 835 aa10.9□□□□□ -0.66
SKA1-204ENST00000488454 SLC47A2Q86VL8 602 aa10.9□□□□□ -0.66
SKA1-204ENST00000488454 FUKQ8N0W3 1084 aa10.9□□□□□ -0.66
SKA1-204ENST00000488454 ANKRD52Q8NB46 1076 aa10.9□□□□□ -0.66
SKA1-204ENST00000488454 ZNF606Q8WXB4 792 aa10.9□□□□□ -0.66
SKA1-204ENST00000488454 ZNF512Q96ME7 567 aaPredicted RBP10.9□□□□□ -0.66
SKA1-204ENST00000488454 ZNF518BQ9C0D4 1074 aa10.9□□□□□ -0.66
SKA1-204ENST00000488454 GPR88Q9GZN0 384 aa10.9□□□□□ -0.66
SKA1-204ENST00000488454 SFXN1Q9H9B4 322 aa10.9□□□□□ -0.66
SKA1-204ENST00000488454 PIDD1Q9HB75 910 aa10.9□□□□□ -0.66
SKA1-204ENST00000488454 ZNHIT6Q9NWK9 470 aaKnown RBP10.9□□□□□ -0.66
SKA1-204ENST00000488454 PCDHGC3Q9UN70 934 aa10.9□□□□□ -0.66
SKA1-204ENST00000488454 INSL5Q9Y5Q6 135 aa10.9□□□□□ -0.66
SKA1-204ENST00000488454 CHD7Q9P2D1 2997 aa10.9□□□□□ -0.66
SKA1-204ENST00000488454 LRRC53A6NM62 1247 aa10.89□□□□□ -0.67
SKA1-204ENST00000488454 AKR1B15C9JRZ8 316 aaPredicted RBP10.89□□□□□ -0.67
SKA1-204ENST00000488454 O00370 1275 aa10.89□□□□□ -0.67
SKA1-204ENST00000488454 LINC01565O15544 149 aa10.89□□□□□ -0.67
SKA1-204ENST00000488454 CYP11B1P15538 503 aa10.89□□□□□ -0.67
SKA1-204ENST00000488454 HOXA9P31269 272 aa10.89□□□□□ -0.67
SKA1-204ENST00000488454 CASP14P31944 242 aa10.89□□□□□ -0.67
SKA1-204ENST00000488454 BCAT1P54687 386 aa10.89□□□□□ -0.67
SKA1-204ENST00000488454 MAP3K7CLP57077 242 aa10.89□□□□□ -0.67
SKA1-204ENST00000488454 RBM10P98175 930 aaKnown RBP10.89□□□□□ -0.67
SKA1-204ENST00000488454 KCNC3Q14003 757 aa10.89□□□□□ -0.67
SKA1-204ENST00000488454 DDR2Q16832 855 aa10.89□□□□□ -0.67
SKA1-204ENST00000488454 CCDC142Q17RM4 750 aa10.89□□□□□ -0.67
SKA1-204ENST00000488454 GOLGA7BQ2TAP0 167 aa10.89□□□□□ -0.67
SKA1-204ENST00000488454 CES5AQ6NT32 575 aa10.89□□□□□ -0.67
SKA1-204ENST00000488454 ANKRD54Q6NXT1 300 aa10.89□□□□□ -0.67
SKA1-204ENST00000488454 CYP26C1Q6V0L0 522 aa10.89□□□□□ -0.67
SKA1-204ENST00000488454 PAQR9Q6ZVX9 377 aa10.89□□□□□ -0.67
SKA1-204ENST00000488454 ZNF677Q86XU0 584 aa10.89□□□□□ -0.67
SKA1-204ENST00000488454 OR8K1Q8NGG5 319 aa10.89□□□□□ -0.67
SKA1-204ENST00000488454 GIPC2Q8TF65 315 aa10.89□□□□□ -0.67
SKA1-204ENST00000488454 TFAP2BQ92481 460 aa10.89□□□□□ -0.67
SKA1-204ENST00000488454 BAP1Q92560 729 aa10.89□□□□□ -0.67
SKA1-204ENST00000488454 SYN2Q92777 582 aaPredicted RBP10.89□□□□□ -0.67
SKA1-204ENST00000488454 C8orf48Q96LL4 319 aa10.89□□□□□ -0.67
SKA1-204ENST00000488454 CEP295NLQ96MC4 621 aa10.89□□□□□ -0.67
SKA1-204ENST00000488454 USB1Q9BQ65 265 aaKnown RBP10.89□□□□□ -0.67
SKA1-204ENST00000488454 DUSP16Q9BY84 665 aa10.89□□□□□ -0.67
SKA1-204ENST00000488454 TTYH3Q9C0H2 523 aa10.89□□□□□ -0.67
SKA1-204ENST00000488454 DMAP1Q9NPF5 467 aaPredicted RBP10.89□□□□□ -0.67
SKA1-204ENST00000488454 KRT82Q9NSB4 513 aa10.89□□□□□ -0.67
SKA1-204ENST00000488454 EHD2Q9NZN4 543 aa10.89□□□□□ -0.67
SKA1-204ENST00000488454 AIPL1Q9NZN9 384 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms