RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 SOCS4Q8WXH5 440 aa4.86□□□□□ -1.63
VPS41-213ENST00000485955 LENG8Q96PV6 779 aaPredicted RBP4.86□□□□□ -1.63
VPS41-213ENST00000485955 FSD1LQ9BXM9 530 aa4.86□□□□□ -1.63
VPS41-213ENST00000485955 C1orf112Q9NSG2 853 aa4.86□□□□□ -1.63
VPS41-213ENST00000485955 ADAMTS5Q9UNA0 930 aa4.86□□□□□ -1.63
VPS41-213ENST00000485955 FAM227AF5H4B4 570 aa4.85□□□□□ -1.63
VPS41-213ENST00000485955 INO80B-WBP1J3KQ70 363 aa4.85□□□□□ -1.63
VPS41-213ENST00000485955 SMIM22K7EJ46 135 aa4.85□□□□□ -1.63
VPS41-213ENST00000485955 LATS1O95835 1130 aa4.85□□□□□ -1.63
VPS41-213ENST00000485955 U2AF1L5P0DN76 240 aaPredicted RBP4.85□□□□□ -1.63
VPS41-213ENST00000485955 CTGFP29279 349 aa4.85□□□□□ -1.63
VPS41-213ENST00000485955 U2AF1Q01081 240 aaKnown RBP eCLIP4.85□□□□□ -1.63
VPS41-213ENST00000485955 SATB1Q01826 763 aa4.85□□□□□ -1.63
VPS41-213ENST00000485955 HNRNPA0Q13151 305 aaKnown RBP4.85□□□□□ -1.63
VPS41-213ENST00000485955 RAB32Q13637 225 aa4.85□□□□□ -1.63
VPS41-213ENST00000485955 CYP1B1Q16678 543 aa4.85□□□□□ -1.63
VPS41-213ENST00000485955 C3orf38Q5JPI3 329 aa4.85□□□□□ -1.63
VPS41-213ENST00000485955 ZNF66Q6ZN08 573 aa4.85□□□□□ -1.63
VPS41-213ENST00000485955 DPY19L3Q6ZPD9 716 aa4.85□□□□□ -1.63
VPS41-213ENST00000485955 KCTD20Q7Z5Y7 419 aa4.85□□□□□ -1.63
VPS41-213ENST00000485955 CAND1Q86VP6 1230 aaKnown RBP4.85□□□□□ -1.63
VPS41-213ENST00000485955 IZUMO1Q8IYV9 350 aa4.85□□□□□ -1.63
VPS41-213ENST00000485955 RP9Q8TA86 221 aaKnown RBP4.85□□□□□ -1.63
VPS41-213ENST00000485955 TSR2Q969E8 191 aaKnown RBP4.85□□□□□ -1.63
VPS41-213ENST00000485955 PUS7Q96PZ0 661 aaKnown RBP4.85□□□□□ -1.63
VPS41-213ENST00000485955 C17orf80Q9BSJ5 609 aa4.85□□□□□ -1.63
VPS41-213ENST00000485955 INO80BQ9C086 356 aaPredicted RBP4.85□□□□□ -1.63
VPS41-213ENST00000485955 ZNF518BQ9C0D4 1074 aa4.85□□□□□ -1.63
VPS41-213ENST00000485955 BHMT2Q9H2M3 363 aa4.85□□□□□ -1.63
VPS41-213ENST00000485955 SACM1LQ9NTJ5 587 aa4.85□□□□□ -1.63
VPS41-213ENST00000485955 GABRQQ9UN88 632 aa4.85□□□□□ -1.63
VPS41-213ENST00000485955 TRIM43BA6NCK2 446 aa4.84□□□□□ -1.63
VPS41-213ENST00000485955 PRKAG1P54619 331 aa4.84□□□□□ -1.63
VPS41-213ENST00000485955 FMO1Q01740 532 aa4.84□□□□□ -1.63
VPS41-213ENST00000485955 GRM1Q13255 1194 aa4.84□□□□□ -1.63
VPS41-213ENST00000485955 GRM3Q14832 879 aa4.84□□□□□ -1.63
VPS41-213ENST00000485955 PRAMEF17Q5VTA0 474 aa4.84□□□□□ -1.63
VPS41-213ENST00000485955 FAM156AQ8NDB6 213 aa4.84□□□□□ -1.63
VPS41-213ENST00000485955 CYP2W1Q8TAV3 490 aa4.84□□□□□ -1.63
VPS41-213ENST00000485955 TRIM43Q96BQ3 446 aaPredicted RBP4.84□□□□□ -1.63
VPS41-213ENST00000485955 THAP7Q9BT49 309 aaPredicted RBP4.84□□□□□ -1.63
VPS41-213ENST00000485955 A1CFQ9NQ94 594 aaKnown RBP4.84□□□□□ -1.63
VPS41-213ENST00000485955 XPNPEP3Q9NQH7 507 aa4.84□□□□□ -1.63
VPS41-213ENST00000485955 FLRT1Q9NZU1 646 aa4.84□□□□□ -1.63
VPS41-213ENST00000485955 CCNL1Q9UK58 526 aaPredicted RBP4.84□□□□□ -1.63
VPS41-213ENST00000485955 TPCN1Q9ULQ1 816 aa4.84□□□□□ -1.63
VPS41-213ENST00000485955 WDR91A4D1P6 747 aa4.83□□□□□ -1.64
VPS41-213ENST00000485955 PRRT4C9JH25 899 aa4.83□□□□□ -1.64
VPS41-213ENST00000485955 PYCARD-AS1I3L0S3 204 aa4.83□□□□□ -1.64
VPS41-213ENST00000485955 AP4M1O00189 453 aa4.83□□□□□ -1.64
VPS41-213ENST00000485955 TJP3O95049 919 aa4.83□□□□□ -1.64
VPS41-213ENST00000485955 NPSP0C0P6 89 aa4.83□□□□□ -1.64
VPS41-213ENST00000485955 CDK4P11802 303 aa4.83□□□□□ -1.64
VPS41-213ENST00000485955 MPGP29372 298 aa4.83□□□□□ -1.64
VPS41-213ENST00000485955 HOXA4Q00056 320 aaPredicted RBP4.83□□□□□ -1.64
VPS41-213ENST00000485955 CNGA2Q16280 664 aa4.83□□□□□ -1.64
VPS41-213ENST00000485955 L1TD1Q5T7N2 865 aaKnown RBP4.83□□□□□ -1.64
VPS41-213ENST00000485955 RNF220Q5VTB9 566 aa4.83□□□□□ -1.64
VPS41-213ENST00000485955 ZNF804AQ7Z570 1209 aa4.83□□□□□ -1.64
VPS41-213ENST00000485955 C14orf80Q86SX3 495 aa4.83□□□□□ -1.64
VPS41-213ENST00000485955 CHSY1Q86X52 802 aa4.83□□□□□ -1.64
VPS41-213ENST00000485955 MYO1HQ8N1T3 1032 aa4.83□□□□□ -1.64
VPS41-213ENST00000485955 VGLL2Q8N8G2 317 aa4.83□□□□□ -1.64
VPS41-213ENST00000485955 SUCLG2Q96I99 432 aa4.83□□□□□ -1.64
VPS41-213ENST00000485955 PRR25Q96S07 402 aa4.83□□□□□ -1.64
VPS41-213ENST00000485955 SH2D3AQ9BRG2 576 aa4.83□□□□□ -1.64
VPS41-213ENST00000485955 ZSCAN32Q9NX65 697 aa4.83□□□□□ -1.64
VPS41-213ENST00000485955 TCEAL9Q9UHQ7 104 aa4.83□□□□□ -1.64
VPS41-213ENST00000485955 VSTM5A8MXK1 200 aa4.82□□□□□ -1.64
VPS41-213ENST00000485955 ISM1B1AKI9 464 aa4.82□□□□□ -1.64
VPS41-213ENST00000485955 H7C4K7 107 aa4.82□□□□□ -1.64
VPS41-213ENST00000485955 FRS3O43559 492 aa4.82□□□□□ -1.64
VPS41-213ENST00000485955 BRAFP15056 766 aa4.82□□□□□ -1.64
VPS41-213ENST00000485955 ZKSCAN1P17029 563 aaPredicted RBP4.82□□□□□ -1.64
VPS41-213ENST00000485955 FPR3P25089 353 aa4.82□□□□□ -1.64
VPS41-213ENST00000485955 TPTEP56180 551 aa4.82□□□□□ -1.64
VPS41-213ENST00000485955 TUBA4AP68366 448 aa4.82□□□□□ -1.64
VPS41-213ENST00000485955 E2F1Q01094 437 aa4.82□□□□□ -1.64
VPS41-213ENST00000485955 SLC10A2Q12908 348 aaPredicted RBP4.82□□□□□ -1.64
VPS41-213ENST00000485955 GALEQ14376 348 aa4.82□□□□□ -1.64
VPS41-213ENST00000485955 NPY5RQ15761 445 aa4.82□□□□□ -1.64
VPS41-213ENST00000485955 TBC1D25Q3MII6 688 aa4.82□□□□□ -1.64
VPS41-213ENST00000485955 SLC44A4Q53GD3 710 aa4.82□□□□□ -1.64
VPS41-213ENST00000485955 RNASE12Q5GAN4 147 aaKnown RBP4.82□□□□□ -1.64
VPS41-213ENST00000485955 CEP78Q5JTW2 689 aa4.82□□□□□ -1.64
VPS41-213ENST00000485955 FCRL6Q6DN72 434 aa4.82□□□□□ -1.64
VPS41-213ENST00000485955 CCDC149Q6ZUS6 474 aa4.82□□□□□ -1.64
VPS41-213ENST00000485955 CHST15Q7LFX5 561 aaPredicted RBP4.82□□□□□ -1.64
VPS41-213ENST00000485955 SESTD1Q86VW0 696 aa4.82□□□□□ -1.64
VPS41-213ENST00000485955 ABHD11Q8NFV4 315 aa4.82□□□□□ -1.64
VPS41-213ENST00000485955 DNAJB14Q8TBM8 379 aa4.82□□□□□ -1.64
VPS41-213ENST00000485955 SPSB4Q96A44 273 aa4.82□□□□□ -1.64
VPS41-213ENST00000485955 NMD3Q96D46 503 aaKnown RBP4.82□□□□□ -1.64
VPS41-213ENST00000485955 ZNF778Q96MU6 729 aa4.82□□□□□ -1.64
VPS41-213ENST00000485955 DPCDQ9BVM2 203 aaPredicted RBP4.82□□□□□ -1.64
VPS41-213ENST00000485955 QTRT1Q9BXR0 403 aaKnown RBP4.82□□□□□ -1.64
VPS41-213ENST00000485955 SLC29A3Q9BZD2 475 aa4.82□□□□□ -1.64
VPS41-213ENST00000485955 TRIM5Q9C035 493 aa4.82□□□□□ -1.64
VPS41-213ENST00000485955 FAM204AQ9H8W3 233 aa4.82□□□□□ -1.64
VPS41-213ENST00000485955 TRMT13Q9NUP7 481 aaKnown RBP4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms