RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 ACTL9Q8TC94 416 aa19.6■□□□□ 0.73
CCDC88B-207ENST00000479965 CCDC17Q96LX7 622 aa19.6■□□□□ 0.73
CCDC88B-207ENST00000479965 APOL6Q9BWW8 343 aa19.6■□□□□ 0.73
CCDC88B-207ENST00000479965 GPAMQ9HCL2 828 aa19.6■□□□□ 0.73
CCDC88B-207ENST00000479965 POLLQ9UGP5 575 aa19.6■□□□□ 0.73
CCDC88B-207ENST00000479965 PCDHB4Q9Y5E5 795 aa19.6■□□□□ 0.73
CCDC88B-207ENST00000479965 ZNF335Q9H4Z2 1342 aaPredicted RBP19.59■□□□□ 0.73
CCDC88B-207ENST00000479965 CAPN8A6NHC0 703 aa19.59■□□□□ 0.73
CCDC88B-207ENST00000479965 KBTBD13C9JR72 458 aa19.59■□□□□ 0.73
CCDC88B-207ENST00000479965 COG7P83436 770 aa19.59■□□□□ 0.73
CCDC88B-207ENST00000479965 OTUD4Q01804 1114 aaKnown RBP19.59■□□□□ 0.73
CCDC88B-207ENST00000479965 KCNT1Q5JUK3 1230 aa19.59■□□□□ 0.73
CCDC88B-207ENST00000479965 CDC42EP5Q6NZY7 148 aa19.59■□□□□ 0.73
CCDC88B-207ENST00000479965 FBXL19Q6PCT2 694 aa19.59■□□□□ 0.73
CCDC88B-207ENST00000479965 DENND5BQ6ZUT9 1274 aa19.59■□□□□ 0.73
CCDC88B-207ENST00000479965 PIP4K2CQ8TBX8 421 aa19.59■□□□□ 0.73
CCDC88B-207ENST00000479965 LOC100653049A0A140TA62 436 aa19.59■□□□□ 0.73
CCDC88B-207ENST00000479965 TCRBV9S1A1TA0A576 114 aa19.59■□□□□ 0.73
CCDC88B-207ENST00000479965 KRT34O76011 436 aa19.59■□□□□ 0.73
CCDC88B-207ENST00000479965 PROCP04070 461 aa19.59■□□□□ 0.73
CCDC88B-207ENST00000479965 RAG1P15918 1043 aa19.59■□□□□ 0.73
CCDC88B-207ENST00000479965 STIP1P31948 543 aaKnown RBP19.59■□□□□ 0.73
CCDC88B-207ENST00000479965 FOLH1Q04609 750 aa19.59■□□□□ 0.73
CCDC88B-207ENST00000479965 PEX6Q13608 980 aa19.59■□□□□ 0.73
CCDC88B-207ENST00000479965 BMPR2Q13873 1038 aa19.59■□□□□ 0.73
CCDC88B-207ENST00000479965 BRDTQ58F21 947 aaPredicted RBP19.59■□□□□ 0.73
CCDC88B-207ENST00000479965 MAP7D3Q8IWC1 876 aa19.59■□□□□ 0.73
CCDC88B-207ENST00000479965 FAM213AQ9BRX8 229 aa19.59■□□□□ 0.73
CCDC88B-207ENST00000479965 DNAJB4Q9UDY4 337 aa19.59■□□□□ 0.73
CCDC88B-207ENST00000479965 ZHX2Q9Y6X8 837 aa19.59■□□□□ 0.73
CCDC88B-207ENST00000479965 MYOCOSA0A1B0GUC4 107 aa19.58■□□□□ 0.73
CCDC88B-207ENST00000479965 ATP2B4P23634 1241 aa19.58■□□□□ 0.73
CCDC88B-207ENST00000479965 GNA15P30679 374 aa19.58■□□□□ 0.73
CCDC88B-207ENST00000479965 HSPA2P54652 639 aa19.58■□□□□ 0.73
CCDC88B-207ENST00000479965 HPCAP84074 193 aa19.58■□□□□ 0.73
CCDC88B-207ENST00000479965 CCDC142Q17RM4 750 aa19.58■□□□□ 0.73
CCDC88B-207ENST00000479965 TFDP3Q5H9I0 405 aa19.58■□□□□ 0.73
CCDC88B-207ENST00000479965 WDR44Q5JSH3 913 aa19.58■□□□□ 0.73
CCDC88B-207ENST00000479965 DPY19L2Q6NUT2 758 aa19.58■□□□□ 0.73
CCDC88B-207ENST00000479965 ZNF513Q8N8E2 541 aaPredicted RBP19.58■□□□□ 0.73
CCDC88B-207ENST00000479965 DHRS4Q9BTZ2 278 aa19.58■□□□□ 0.73
CCDC88B-207ENST00000479965 APPL1Q9UKG1 709 aa19.58■□□□□ 0.73
CCDC88B-207ENST00000479965 PACSIN3Q9UKS6 424 aa19.58■□□□□ 0.73
CCDC88B-207ENST00000479965 TBC1D30Q9Y2I9 924 aa19.58■□□□□ 0.73
CCDC88B-207ENST00000479965 SNCAIPQ9Y6H5 919 aa19.58■□□□□ 0.73
CCDC88B-207ENST00000479965 SPDYE16A6NNV3 312 aaPredicted RBP19.58■□□□□ 0.72
CCDC88B-207ENST00000479965 AVILO75366 819 aa19.58■□□□□ 0.72
CCDC88B-207ENST00000479965 POLR2MP0CAP2 368 aa19.58■□□□□ 0.72
CCDC88B-207ENST00000479965 TNNI1P19237 187 aa19.58■□□□□ 0.72
CCDC88B-207ENST00000479965 RPL22P35268 128 aaKnown RBP19.58■□□□□ 0.72
CCDC88B-207ENST00000479965 HNRNPDQ14103 355 aaKnown RBP19.58■□□□□ 0.72
CCDC88B-207ENST00000479965 ATG16L1Q676U5 607 aa19.58■□□□□ 0.72
CCDC88B-207ENST00000479965 PCGF5Q86SE9 256 aa19.58■□□□□ 0.72
CCDC88B-207ENST00000479965 PRPF31Q8WWY3 499 aaKnown RBP19.58■□□□□ 0.72
CCDC88B-207ENST00000479965 IP6K2Q9UHH9 426 aa19.58■□□□□ 0.72
CCDC88B-207ENST00000479965 DRG1Q9Y295 367 aaKnown RBP19.58■□□□□ 0.72
CCDC88B-207ENST00000479965 FARP1Q9Y4F1 1045 aaPredicted RBP19.58■□□□□ 0.72
CCDC88B-207ENST00000479965 SCINQ9Y6U3 715 aa19.58■□□□□ 0.72
CCDC88B-207ENST00000479965 MAGEB3O15480 346 aa19.58■□□□□ 0.72
CCDC88B-207ENST00000479965 WEE2P0C1S8 567 aa19.58■□□□□ 0.72
CCDC88B-207ENST00000479965 RARRES1P49788 294 aa19.58■□□□□ 0.72
CCDC88B-207ENST00000479965 TMEM62Q0P6H9 643 aa19.58■□□□□ 0.72
CCDC88B-207ENST00000479965 B3GNT6Q6ZMB0 384 aa19.58■□□□□ 0.72
CCDC88B-207ENST00000479965 SIAH1Q8IUQ4 282 aa19.58■□□□□ 0.72
CCDC88B-207ENST00000479965 C12orf56Q8IXR9 622 aa19.58■□□□□ 0.72
CCDC88B-207ENST00000479965 FAM71DQ8N9W8 422 aa19.58■□□□□ 0.72
CCDC88B-207ENST00000479965 PRR12Q9ULL5 1215 aa19.58■□□□□ 0.72
CCDC88B-207ENST00000479965 COQ4Q9Y3A0 265 aa19.58■□□□□ 0.72
CCDC88B-207ENST00000479965 hCG_1818297A0A087WSY0 165 aa19.57■□□□□ 0.72
CCDC88B-207ENST00000479965 A0A0J9YVX5 310 aa19.57■□□□□ 0.72
CCDC88B-207ENST00000479965 TOM1L1O75674 476 aa19.57■□□□□ 0.72
CCDC88B-207ENST00000479965 NOMO3P69849 1222 aa19.57■□□□□ 0.72
CCDC88B-207ENST00000479965 ANKRD20A4Q4UJ75 823 aa19.57■□□□□ 0.72
CCDC88B-207ENST00000479965 CES4AQ5XG92 561 aa19.57■□□□□ 0.72
CCDC88B-207ENST00000479965 IYDQ6PHW0 289 aa19.57■□□□□ 0.72
CCDC88B-207ENST00000479965 KLHDC10Q6PID8 442 aa19.57■□□□□ 0.72
CCDC88B-207ENST00000479965 PAOXQ6QHF9 649 aa19.57■□□□□ 0.72
CCDC88B-207ENST00000479965 CCDC106Q9BWC9 280 aa19.57■□□□□ 0.72
CCDC88B-207ENST00000479965 C20orf27Q9GZN8 174 aa19.57■□□□□ 0.72
CCDC88B-207ENST00000479965 PARVAQ9NVD7 372 aa19.57■□□□□ 0.72
CCDC88B-207ENST00000479965 PTTG2Q9NZH5 202 aa19.57■□□□□ 0.72
CCDC88B-207ENST00000479965 CST8O60676 142 aa19.57■□□□□ 0.72
CCDC88B-207ENST00000479965 ITGAVP06756 1048 aa19.57■□□□□ 0.72
CCDC88B-207ENST00000479965 PMLP29590 882 aa19.57■□□□□ 0.72
CCDC88B-207ENST00000479965 ADARP55265 1226 aaKnown RBP19.57■□□□□ 0.72
CCDC88B-207ENST00000479965 SOX10P56693 466 aa19.57■□□□□ 0.72
CCDC88B-207ENST00000479965 GTF2BQ00403 316 aa19.57■□□□□ 0.72
CCDC88B-207ENST00000479965 C1orf228Q6PIY5 440 aa19.57■□□□□ 0.72
CCDC88B-207ENST00000479965 SEPT12Q8IYM1 358 aa19.57■□□□□ 0.72
CCDC88B-207ENST00000479965 NAT8LQ8N9F0 302 aa19.57■□□□□ 0.72
CCDC88B-207ENST00000479965 CNTN3Q9P232 1028 aa19.57■□□□□ 0.72
CCDC88B-207ENST00000479965 NYAP2Q9P242 653 aa19.57■□□□□ 0.72
CCDC88B-207ENST00000479965 CDK5RAP2Q96SN8 1893 aa19.57■□□□□ 0.72
CCDC88B-207ENST00000479965 MAGEA10P43363 369 aaPredicted RBP19.56■□□□□ 0.72
CCDC88B-207ENST00000479965 NADK2Q4G0N4 442 aa19.56■□□□□ 0.72
CCDC88B-207ENST00000479965 PLA2G4FQ68DD2 849 aa19.56■□□□□ 0.72
CCDC88B-207ENST00000479965 RSPH3Q86UC2 560 aa19.56■□□□□ 0.72
CCDC88B-207ENST00000479965 AMIGO3Q86WK7 504 aa19.56■□□□□ 0.72
CCDC88B-207ENST00000479965 RBM17Q96I25 401 aaKnown RBP19.56■□□□□ 0.72
CCDC88B-207ENST00000479965 VILLO15195 856 aa19.56■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms