RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 C4orf50Q6ZRC1 276 aa14.07□□□□□ -0.16
USP42-206ENST00000479544 PTF1AQ7RTS3 328 aa14.07□□□□□ -0.16
USP42-206ENST00000479544 ARHGEF3Q9NR81 526 aa14.07□□□□□ -0.16
USP42-206ENST00000479544 KRT82Q9NSB4 513 aa14.07□□□□□ -0.16
USP42-206ENST00000479544 TBC1D22BQ9NU19 505 aa14.07□□□□□ -0.16
USP42-206ENST00000479544 BCL9O00512 1426 aa14.06□□□□□ -0.16
USP42-206ENST00000479544 TBXAS1P24557 533 aaPredicted RBP14.06□□□□□ -0.16
USP42-206ENST00000479544 NPTX2P47972 431 aa14.06□□□□□ -0.16
USP42-206ENST00000479544 TAS2R40P59535 323 aa14.06□□□□□ -0.16
USP42-206ENST00000479544 PTK6Q13882 451 aa14.06□□□□□ -0.16
USP42-206ENST00000479544 ZNF568Q3ZCX4 644 aa14.06□□□□□ -0.16
USP42-206ENST00000479544 TTC39BQ5VTQ0 682 aaPredicted RBP14.06□□□□□ -0.16
USP42-206ENST00000479544 UTS2BQ765I0 119 aa14.06□□□□□ -0.16
USP42-206ENST00000479544 PODNQ7Z5L7 613 aa14.06□□□□□ -0.16
USP42-206ENST00000479544 ZFPM1Q8IX07 1006 aa14.06□□□□□ -0.16
USP42-206ENST00000479544 NIM1KQ8IY84 436 aa14.06□□□□□ -0.16
USP42-206ENST00000479544 CYGBQ8WWM9 190 aa14.06□□□□□ -0.16
USP42-206ENST00000479544 CYP26B1Q9NR63 512 aa14.06□□□□□ -0.16
USP42-206ENST00000479544 FAM49BQ9NUQ9 324 aa14.06□□□□□ -0.16
USP42-206ENST00000479544 GALNT8Q9NY28 637 aa14.06□□□□□ -0.16
USP42-206ENST00000479544 HERC5Q9UII4 1024 aaKnown RBP14.06□□□□□ -0.16
USP42-206ENST00000479544 PCDHA10Q9Y5I2 948 aa14.06□□□□□ -0.16
USP42-206ENST00000479544 KLHL2O95198 593 aa14.06□□□□□ -0.16
USP42-206ENST00000479544 SPATA31C1P0DKV0 1188 aa14.06□□□□□ -0.16
USP42-206ENST00000479544 FMO1Q01740 532 aa14.06□□□□□ -0.16
USP42-206ENST00000479544 PPIDQ08752 370 aaKnown RBP14.06□□□□□ -0.16
USP42-206ENST00000479544 CES3Q6UWW8 571 aa14.06□□□□□ -0.16
USP42-206ENST00000479544 PTAR1Q7Z6K3 402 aaPredicted RBP14.06□□□□□ -0.16
USP42-206ENST00000479544 ZNF786Q8N393 782 aa14.06□□□□□ -0.16
USP42-206ENST00000479544 DNAJC1Q96KC8 554 aaKnown RBP14.06□□□□□ -0.16
USP42-206ENST00000479544 HAUS8Q9BT25 410 aa14.06□□□□□ -0.16
USP42-206ENST00000479544 LRMDAQ9H2I8 198 aa14.06□□□□□ -0.16
USP42-206ENST00000479544 MAN1C1Q9NR34 630 aa14.06□□□□□ -0.16
USP42-206ENST00000479544 SNX13Q9Y5W8 968 aa14.06□□□□□ -0.16
USP42-206ENST00000479544 MYH6P13533 1939 aa14.06□□□□□ -0.16
USP42-206ENST00000479544 TFE3P19532 575 aaPredicted RBP14.06□□□□□ -0.16
USP42-206ENST00000479544 SREBF1P36956 1147 aa14.06□□□□□ -0.16
USP42-206ENST00000479544 MRPS22P82650 360 aaKnown RBP14.06□□□□□ -0.16
USP42-206ENST00000479544 PLOD1Q02809 727 aaPredicted RBP14.06□□□□□ -0.16
USP42-206ENST00000479544 BST1Q10588 318 aa14.06□□□□□ -0.16
USP42-206ENST00000479544 NRF1Q16656 503 aa14.06□□□□□ -0.16
USP42-206ENST00000479544 SLC10A5Q5PT55 438 aa14.06□□□□□ -0.16
USP42-206ENST00000479544 NCAPG2Q86XI2 1143 aa14.06□□□□□ -0.16
USP42-206ENST00000479544 NUP93Q8N1F7 819 aa14.06□□□□□ -0.16
USP42-206ENST00000479544 SLC24A2Q9UI40 661 aa14.06□□□□□ -0.16
USP42-206ENST00000479544 KCNG1Q9UIX4 513 aa14.06□□□□□ -0.16
USP42-206ENST00000479544 STRIP2Q9ULQ0 834 aa14.06□□□□□ -0.16
USP42-206ENST00000479544 SOX13Q9UN79 622 aa14.06□□□□□ -0.16
USP42-206ENST00000479544 SSX2IPQ9Y2D8 614 aa14.06□□□□□ -0.16
USP42-206ENST00000479544 TMED10P49755 219 aaKnown RBP14.05□□□□□ -0.16
USP42-206ENST00000479544 TBL3Q12788 808 aaKnown RBP14.05□□□□□ -0.16
USP42-206ENST00000479544 ITGA9Q13797 1035 aa14.05□□□□□ -0.16
USP42-206ENST00000479544 COBLL1Q53SF7 1204 aa14.05□□□□□ -0.16
USP42-206ENST00000479544 SLFN12LQ6IEE8 588 aa14.05□□□□□ -0.16
USP42-206ENST00000479544 EXD1Q8NHP7 514 aa14.05□□□□□ -0.16
USP42-206ENST00000479544 RPF1Q9H9Y2 349 aaKnown RBP14.05□□□□□ -0.16
USP42-206ENST00000479544 AKT3Q9Y243 479 aa14.05□□□□□ -0.16
USP42-206ENST00000479544 DDTLA6NHG4 134 aaPredicted RBP14.05□□□□□ -0.16
USP42-206ENST00000479544 AVILO75366 819 aa14.05□□□□□ -0.16
USP42-206ENST00000479544 ANPEPP15144 967 aa14.05□□□□□ -0.16
USP42-206ENST00000479544 CIITAP33076 1130 aa14.05□□□□□ -0.16
USP42-206ENST00000479544 NUMBP49757 651 aa14.05□□□□□ -0.16
USP42-206ENST00000479544 SCNN1BP51168 640 aa14.05□□□□□ -0.16
USP42-206ENST00000479544 VCPP55072 806 aaKnown RBP14.05□□□□□ -0.16
USP42-206ENST00000479544 MPP2Q14168 576 aa14.05□□□□□ -0.16
USP42-206ENST00000479544 SGSM1Q2NKQ1 1148 aa14.05□□□□□ -0.16
USP42-206ENST00000479544 SLC51AQ86UW1 340 aa14.05□□□□□ -0.16
USP42-206ENST00000479544 MAB21L3Q8N8X9 362 aa14.05□□□□□ -0.16
USP42-206ENST00000479544 LRRC19Q9H756 370 aa14.05□□□□□ -0.16
USP42-206ENST00000479544 LRP5O75197 1615 aa14.05□□□□□ -0.16
USP42-206ENST00000479544 BTNL10A8MVZ5 291 aa14.05□□□□□ -0.16
USP42-206ENST00000479544 KPNA7A9QM74 516 aa14.05□□□□□ -0.16
USP42-206ENST00000479544 C6orf222P0C671 652 aaPredicted RBP14.05□□□□□ -0.16
USP42-206ENST00000479544 SRGAP2BP0DMP2 458 aa14.05□□□□□ -0.16
USP42-206ENST00000479544 CUL2Q13617 745 aa14.05□□□□□ -0.16
USP42-206ENST00000479544 PIGHQ14442 188 aaPredicted RBP14.05□□□□□ -0.16
USP42-206ENST00000479544 DUOXA2Q1HG44 320 aa14.05□□□□□ -0.16
USP42-206ENST00000479544 ACSBG2Q5FVE4 666 aa14.05□□□□□ -0.16
USP42-206ENST00000479544 HACE1Q8IYU2 909 aa14.05□□□□□ -0.16
USP42-206ENST00000479544 ZCCHC9Q8N567 271 aaKnown RBP14.05□□□□□ -0.16
USP42-206ENST00000479544 FAM81AQ8TBF8 368 aa14.05□□□□□ -0.16
USP42-206ENST00000479544 SH3TC2Q8TF17 1288 aa14.05□□□□□ -0.16
USP42-206ENST00000479544 ACSS2Q9NR19 701 aa14.05□□□□□ -0.16
USP42-206ENST00000479544 SAR1AQ9NR31 198 aa14.05□□□□□ -0.16
USP42-206ENST00000479544 GRID1Q9ULK0 1009 aa14.05□□□□□ -0.16
USP42-206ENST00000479544 TRPM3Q9HCF6 1732 aaPredicted RBP14.05□□□□□ -0.16
USP42-206ENST00000479544 PPP1R11O60927 126 aaPredicted RBP14.04□□□□□ -0.16
USP42-206ENST00000479544 PTGIRP43119 386 aa14.04□□□□□ -0.16
USP42-206ENST00000479544 RPS6KA3P51812 740 aa14.04□□□□□ -0.16
USP42-206ENST00000479544 OTOP1Q7RTM1 612 aa14.04□□□□□ -0.16
USP42-206ENST00000479544 SDCCAG3Q96C92 435 aa14.04□□□□□ -0.16
USP42-206ENST00000479544 ERLEC1Q96DZ1 483 aa14.04□□□□□ -0.16
USP42-206ENST00000479544 APOL2Q9BQE5 337 aa14.04□□□□□ -0.16
USP42-206ENST00000479544 CADM1Q9BY67 442 aaKnown RBP14.04□□□□□ -0.16
USP42-206ENST00000479544 SEMA6AQ9H2E6 1030 aa14.04□□□□□ -0.16
USP42-206ENST00000479544 POLLQ9UGP5 575 aa14.04□□□□□ -0.16
USP42-206ENST00000479544 TBX10O75333 385 aa14.04□□□□□ -0.16
USP42-206ENST00000479544 FGFR3P22607 806 aa14.04□□□□□ -0.16
USP42-206ENST00000479544 MAP4P27816 1152 aaKnown RBP14.04□□□□□ -0.16
USP42-206ENST00000479544 PMLP29590 882 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms