RNA–Protein interactions for RNA: ENST00000479532.1

SF3B1-209, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 587 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-209ENST00000479532 SURF1Q15526 300 aa6.67□□□□□ -1.34
SF3B1-209ENST00000479532 TERF2Q15554 542 aa6.67□□□□□ -1.34
SF3B1-209ENST00000479532 STX1AQ16623 288 aa6.67□□□□□ -1.34
SF3B1-209ENST00000479532 TCTN1Q2MV58 587 aa6.67□□□□□ -1.34
SF3B1-209ENST00000479532 EDRF1Q3B7T1 1238 aa6.67□□□□□ -1.34
SF3B1-209ENST00000479532 NOMO2Q5JPE7 1267 aa6.67□□□□□ -1.34
SF3B1-209ENST00000479532 HP1BP3Q5SSJ5 553 aaPredicted RBP6.67□□□□□ -1.34
SF3B1-209ENST00000479532 UBXN11Q5T124 520 aa6.67□□□□□ -1.34
SF3B1-209ENST00000479532 KLHL10Q6JEL2 608 aa6.67□□□□□ -1.34
SF3B1-209ENST00000479532 HDXQ7Z353 690 aa6.67□□□□□ -1.34
SF3B1-209ENST00000479532 MRPL10Q7Z7H8 261 aaKnown RBP6.67□□□□□ -1.34
SF3B1-209ENST00000479532 RTN4RL1Q86UN2 441 aaPredicted RBP6.67□□□□□ -1.34
SF3B1-209ENST00000479532 C12orf56Q8IXR9 622 aa6.67□□□□□ -1.34
SF3B1-209ENST00000479532 SMYD4Q8IYR2 804 aaPredicted RBP6.67□□□□□ -1.34
SF3B1-209ENST00000479532 CMTR2Q8IYT2 770 aaKnown RBP6.67□□□□□ -1.34
SF3B1-209ENST00000479532 ADSSL1Q8N142 457 aa6.67□□□□□ -1.34
SF3B1-209ENST00000479532 LRRC43Q8N309 656 aa6.67□□□□□ -1.34
SF3B1-209ENST00000479532 FAM169BQ8N8A8 192 aa6.67□□□□□ -1.34
SF3B1-209ENST00000479532 XXYLT1Q8NBI6 393 aa6.67□□□□□ -1.34
SF3B1-209ENST00000479532 HNRNPLLQ8WVV9 542 aaKnown RBP6.67□□□□□ -1.34
SF3B1-209ENST00000479532 LINC01599Q8WXQ3 324 aa6.67□□□□□ -1.34
SF3B1-209ENST00000479532 P2RX5Q93086 422 aa6.67□□□□□ -1.34
SF3B1-209ENST00000479532 ELMO3Q96BJ8 720 aa6.67□□□□□ -1.34
SF3B1-209ENST00000479532 VWCEQ96DN2 955 aa6.67□□□□□ -1.34
SF3B1-209ENST00000479532 ZBTB45Q96K62 511 aaPredicted RBP6.67□□□□□ -1.34
SF3B1-209ENST00000479532 TSPAN18Q96SJ8 248 aa6.67□□□□□ -1.34
SF3B1-209ENST00000479532 RAD9AQ99638 391 aa6.67□□□□□ -1.34
SF3B1-209ENST00000479532 FAM83CQ9BQN1 747 aa6.67□□□□□ -1.34
SF3B1-209ENST00000479532 FAM213AQ9BRX8 229 aa6.67□□□□□ -1.34
SF3B1-209ENST00000479532 FGFBP2Q9BYJ0 223 aa6.67□□□□□ -1.34
SF3B1-209ENST00000479532 TMEM117Q9H0C3 514 aa6.67□□□□□ -1.34
SF3B1-209ENST00000479532 NXF3Q9H4D5 531 aaKnown RBP6.67□□□□□ -1.34
SF3B1-209ENST00000479532 PCIF1Q9H4Z3 704 aa6.67□□□□□ -1.34
SF3B1-209ENST00000479532 PLEKHA5Q9HAU0 1116 aa6.67□□□□□ -1.34
SF3B1-209ENST00000479532 PTPRHQ9HD43 1115 aa6.67□□□□□ -1.34
SF3B1-209ENST00000479532 AGPAT3Q9NRZ7 376 aa6.67□□□□□ -1.34
SF3B1-209ENST00000479532 SNTG2Q9NY99 539 aa6.67□□□□□ -1.34
SF3B1-209ENST00000479532 FAM53CQ9NYF3 392 aa6.67□□□□□ -1.34
SF3B1-209ENST00000479532 HSPBP1Q9NZL4 362 aa6.67□□□□□ -1.34
SF3B1-209ENST00000479532 PRKAG3Q9UGI9 489 aa6.67□□□□□ -1.34
SF3B1-209ENST00000479532 CTNND2Q9UQB3 1225 aa6.67□□□□□ -1.34
SF3B1-209ENST00000479532 MAPK8IP1Q9UQF2 711 aa6.67□□□□□ -1.34
SF3B1-209ENST00000479532 TRAF3IP3Q9Y228 551 aa6.67□□□□□ -1.34
SF3B1-209ENST00000479532 RWDD3Q9Y3V2 267 aa6.67□□□□□ -1.34
SF3B1-209ENST00000479532 PCDHA11Q9Y5I1 949 aa6.67□□□□□ -1.34
SF3B1-209ENST00000479532 STYXL1Q9Y6J8 313 aa6.67□□□□□ -1.34
SF3B1-209ENST00000479532 FNDC1Q4ZHG4 1894 aaPredicted RBP6.66□□□□□ -1.34
SF3B1-209ENST00000479532 PTPRSQ13332 1948 aa6.66□□□□□ -1.34
SF3B1-209ENST00000479532 GFRA2O00451 464 aa6.66□□□□□ -1.34
SF3B1-209ENST00000479532 SMAD7O15105 426 aaKnown RBP6.66□□□□□ -1.34
SF3B1-209ENST00000479532 CLIC2O15247 247 aa6.66□□□□□ -1.34
SF3B1-209ENST00000479532 DGKIO75912 1065 aa6.66□□□□□ -1.34
SF3B1-209ENST00000479532 RECQL4O94761 1208 aa6.66□□□□□ -1.34
SF3B1-209ENST00000479532 IL18RAPO95256 599 aa6.66□□□□□ -1.34
SF3B1-209ENST00000479532 NR3C1P04150 777 aa6.66□□□□□ -1.34
SF3B1-209ENST00000479532 THP07101 528 aa6.66□□□□□ -1.34
SF3B1-209ENST00000479532 EPB41P11171 864 aaKnown RBP6.66□□□□□ -1.34
SF3B1-209ENST00000479532 FGFR1P11362 822 aa6.66□□□□□ -1.34
SF3B1-209ENST00000479532 IMPDH2P12268 514 aa6.66□□□□□ -1.34
SF3B1-209ENST00000479532 KRT13P13646 458 aa6.66□□□□□ -1.34
SF3B1-209ENST00000479532 NR2F2P24468 414 aa6.66□□□□□ -1.34
SF3B1-209ENST00000479532 AKAP5P24588 427 aa6.66□□□□□ -1.34
SF3B1-209ENST00000479532 MLH1P40692 756 aa6.66□□□□□ -1.34
SF3B1-209ENST00000479532 GIPRP48546 466 aa6.66□□□□□ -1.34
SF3B1-209ENST00000479532 SMAD3P84022 425 aaKnown RBP6.66□□□□□ -1.34
SF3B1-209ENST00000479532 FKBP3Q00688 224 aaKnown RBP6.66□□□□□ -1.34
SF3B1-209ENST00000479532 GRIK3Q13003 919 aa6.66□□□□□ -1.34
SF3B1-209ENST00000479532 ADAM9Q13443 819 aa6.66□□□□□ -1.34
SF3B1-209ENST00000479532 NFIL3Q16649 462 aa6.66□□□□□ -1.34
SF3B1-209ENST00000479532 PAN2Q504Q3 1202 aaKnown RBP6.66□□□□□ -1.34
SF3B1-209ENST00000479532 CENPPQ6IPU0 288 aa6.66□□□□□ -1.34
SF3B1-209ENST00000479532 KRTAP5-3Q6L8H2 238 aa6.66□□□□□ -1.34
SF3B1-209ENST00000479532 RBM43Q6ZSC3 357 aaKnown RBP6.66□□□□□ -1.34
SF3B1-209ENST00000479532 ACAD11Q709F0 780 aa6.66□□□□□ -1.34
SF3B1-209ENST00000479532 FAM114A1Q8IWE2 563 aa6.66□□□□□ -1.34
SF3B1-209ENST00000479532 KRT222Q8N1A0 295 aa6.66□□□□□ -1.34
SF3B1-209ENST00000479532 FIBCD1Q8N539 461 aa6.66□□□□□ -1.34
SF3B1-209ENST00000479532 SMG8Q8ND04 991 aaKnown RBP6.66□□□□□ -1.34
SF3B1-209ENST00000479532 CACTINQ8WUQ7 758 aaKnown RBP6.66□□□□□ -1.34
SF3B1-209ENST00000479532 NELFBQ8WX92 580 aa6.66□□□□□ -1.34
SF3B1-209ENST00000479532 LPPQ93052 612 aa6.66□□□□□ -1.34
SF3B1-209ENST00000479532 MYRFLQ96LU7 910 aa6.66□□□□□ -1.34
SF3B1-209ENST00000479532 SAMD11Q96NU1 681 aa6.66□□□□□ -1.34
SF3B1-209ENST00000479532 FNBP1Q96RU3 617 aa6.66□□□□□ -1.34
SF3B1-209ENST00000479532 CBWD1Q9BRT8 395 aa6.66□□□□□ -1.34
SF3B1-209ENST00000479532 TRIM55Q9BYV6 548 aa6.66□□□□□ -1.34
SF3B1-209ENST00000479532 KCTD10Q9H3F6 313 aa6.66□□□□□ -1.34
SF3B1-209ENST00000479532 PIF1Q9H611 641 aa6.66□□□□□ -1.34
SF3B1-209ENST00000479532 SLC38A7Q9NVC3 462 aa6.66□□□□□ -1.34
SF3B1-209ENST00000479532 RBAKQ9NYW8 714 aaPredicted RBP6.66□□□□□ -1.34
SF3B1-209ENST00000479532 MAGEC2Q9UBF1 373 aaPredicted RBP6.66□□□□□ -1.34
SF3B1-209ENST00000479532 RWDD2AQ9UIY3 292 aa6.66□□□□□ -1.34
SF3B1-209ENST00000479532 HES2Q9Y543 173 aa6.66□□□□□ -1.34
SF3B1-209ENST00000479532 PDE4DIPQ5VU43 2346 aa6.66□□□□□ -1.34
SF3B1-209ENST00000479532 MKI67P46013 3256 aaKnown RBP6.66□□□□□ -1.34
SF3B1-209ENST00000479532 GBF1Q92538 1859 aa6.66□□□□□ -1.34
SF3B1-209ENST00000479532 COL4A6Q14031 1691 aa6.65□□□□□ -1.34
SF3B1-209ENST00000479532 PDCD11Q14690 1871 aaKnown RBP6.65□□□□□ -1.34
SF3B1-209ENST00000479532 NLRC5Q86WI3 1866 aa6.65□□□□□ -1.34
SF3B1-209ENST00000479532 GOLGA8IPA6NC78 632 aa6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms