RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 RDXP35241 583 aaKnown RBP12.82□□□□□ -0.36
PTPRF-212ENST00000477970 SCNN1AP37088 669 aa12.82□□□□□ -0.36
PTPRF-212ENST00000477970 CRHR2Q13324 411 aa12.82□□□□□ -0.36
PTPRF-212ENST00000477970 FAM110CQ1W6H9 321 aa12.82□□□□□ -0.36
PTPRF-212ENST00000477970 ZC3H12AQ5D1E8 599 aaKnown RBP12.82□□□□□ -0.36
PTPRF-212ENST00000477970 SNX27Q96L92 541 aa12.82□□□□□ -0.36
PTPRF-212ENST00000477970 SLC15A5A6NIM6 579 aa12.81□□□□□ -0.36
PTPRF-212ENST00000477970 C2CD4BA6NLJ0 364 aa12.81□□□□□ -0.36
PTPRF-212ENST00000477970 E7ESA3 106 aa12.81□□□□□ -0.36
PTPRF-212ENST00000477970 FKTNO75072 461 aa12.81□□□□□ -0.36
PTPRF-212ENST00000477970 RNF8O76064 485 aa12.81□□□□□ -0.36
PTPRF-212ENST00000477970 GPD1P21695 349 aa12.81□□□□□ -0.36
PTPRF-212ENST00000477970 SNX16P57768 344 aa12.81□□□□□ -0.36
PTPRF-212ENST00000477970 ALKAL1Q6UXT8 129 aa12.81□□□□□ -0.36
PTPRF-212ENST00000477970 ARCQ7LC44 396 aa12.81□□□□□ -0.36
PTPRF-212ENST00000477970 CPLX4Q7Z7G2 160 aa12.81□□□□□ -0.36
PTPRF-212ENST00000477970 UNC93AQ86WB7 457 aa12.81□□□□□ -0.36
PTPRF-212ENST00000477970 TEKT4Q8WW24 435 aa12.81□□□□□ -0.36
PTPRF-212ENST00000477970 ZNF668Q96K58 619 aaPredicted RBP12.81□□□□□ -0.36
PTPRF-212ENST00000477970 KDM4CQ9H3R0 1056 aa12.81□□□□□ -0.36
PTPRF-212ENST00000477970 SYNCQ9H7C4 482 aa12.81□□□□□ -0.36
PTPRF-212ENST00000477970 CYLDQ9NQC7 956 aa12.81□□□□□ -0.36
PTPRF-212ENST00000477970 SENP1Q9P0U3 644 aa12.81□□□□□ -0.36
PTPRF-212ENST00000477970 TJP2Q9UDY2 1190 aa12.81□□□□□ -0.36
PTPRF-212ENST00000477970 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.81□□□□□ -0.36
PTPRF-212ENST00000477970 SMIM35A0A1B0GVV1 85 aa12.81□□□□□ -0.36
PTPRF-212ENST00000477970 MBLAC1A4D2B0 266 aaPredicted RBP12.81□□□□□ -0.36
PTPRF-212ENST00000477970 GOLGA8SH3BPF8 625 aa12.81□□□□□ -0.36
PTPRF-212ENST00000477970 SLCO1A2P46721 670 aa12.81□□□□□ -0.36
PTPRF-212ENST00000477970 NDST1P52848 882 aa12.81□□□□□ -0.36
PTPRF-212ENST00000477970 GPS1Q13098 491 aa12.81□□□□□ -0.36
PTPRF-212ENST00000477970 ACVR2BQ13705 512 aa12.81□□□□□ -0.36
PTPRF-212ENST00000477970 PKN2Q16513 984 aaKnown RBP12.81□□□□□ -0.36
PTPRF-212ENST00000477970 FAM47CQ5HY64 1035 aa12.81□□□□□ -0.36
PTPRF-212ENST00000477970 GJC2Q5T442 439 aaPredicted RBP12.81□□□□□ -0.36
PTPRF-212ENST00000477970 ARHGAP17Q68EM7 881 aa12.81□□□□□ -0.36
PTPRF-212ENST00000477970 SLC27A1Q6PCB7 646 aa12.81□□□□□ -0.36
PTPRF-212ENST00000477970 CENPUQ71F23 418 aa12.81□□□□□ -0.36
PTPRF-212ENST00000477970 PPIL6Q8IXY8 311 aa12.81□□□□□ -0.36
PTPRF-212ENST00000477970 GLIS1Q8NBF1 620 aa12.81□□□□□ -0.36
PTPRF-212ENST00000477970 PARK7Q99497 189 aaKnown RBP12.81□□□□□ -0.36
PTPRF-212ENST00000477970 TINF2Q9BSI4 451 aa12.81□□□□□ -0.36
PTPRF-212ENST00000477970 CNTN3Q9P232 1028 aa12.81□□□□□ -0.36
PTPRF-212ENST00000477970 SLC24A2Q9UI40 661 aa12.81□□□□□ -0.36
PTPRF-212ENST00000477970 USP18Q9UMW8 372 aa12.81□□□□□ -0.36
PTPRF-212ENST00000477970 GPR32O75388 356 aa12.8□□□□□ -0.36
PTPRF-212ENST00000477970 PFKMP08237 780 aa12.8□□□□□ -0.36
PTPRF-212ENST00000477970 PECAM1P16284 738 aaPredicted RBP12.8□□□□□ -0.36
PTPRF-212ENST00000477970 MIPP30301 263 aa12.8□□□□□ -0.36
PTPRF-212ENST00000477970 RPL34P49207 117 aaKnown RBP12.8□□□□□ -0.36
PTPRF-212ENST00000477970 OTUD4Q01804 1114 aaKnown RBP12.8□□□□□ -0.36
PTPRF-212ENST00000477970 CYP4V2Q6ZWL3 525 aaPredicted RBP12.8□□□□□ -0.36
PTPRF-212ENST00000477970 PLEKHH3Q7Z736 793 aa12.8□□□□□ -0.36
PTPRF-212ENST00000477970 OR6J1Q8NGC5 347 aa12.8□□□□□ -0.36
PTPRF-212ENST00000477970 MAML1Q92585 1016 aa12.8□□□□□ -0.36
PTPRF-212ENST00000477970 HEXIM2Q96MH2 286 aaKnown RBP12.8□□□□□ -0.36
PTPRF-212ENST00000477970 SLC4A5Q9BY07 1137 aa12.8□□□□□ -0.36
PTPRF-212ENST00000477970 ZMYND8Q9ULU4 1186 aaPredicted RBP12.8□□□□□ -0.36
PTPRF-212ENST00000477970 NRCAMQ92823 1304 aa12.8□□□□□ -0.36
PTPRF-212ENST00000477970 SMIM23A6NLE4 172 aa12.8□□□□□ -0.36
PTPRF-212ENST00000477970 OAS1P00973 400 aaKnown RBP12.8□□□□□ -0.36
PTPRF-212ENST00000477970 CYP3A5P20815 502 aa12.8□□□□□ -0.36
PTPRF-212ENST00000477970 PDK2Q15119 407 aa12.8□□□□□ -0.36
PTPRF-212ENST00000477970 TAF1CQ15572 869 aaPredicted RBP12.8□□□□□ -0.36
PTPRF-212ENST00000477970 ZFYVE27Q5T4F4 411 aa12.8□□□□□ -0.36
PTPRF-212ENST00000477970 C17orf99Q6UX52 265 aa12.8□□□□□ -0.36
PTPRF-212ENST00000477970 NAT8LQ8N9F0 302 aa12.8□□□□□ -0.36
PTPRF-212ENST00000477970 UHMK1Q8TAS1 419 aaKnown RBP12.8□□□□□ -0.36
PTPRF-212ENST00000477970 ACTL9Q8TC94 416 aa12.8□□□□□ -0.36
PTPRF-212ENST00000477970 FAM118BQ9BPY3 351 aa12.8□□□□□ -0.36
PTPRF-212ENST00000477970 GCOM2Q9BZD3 368 aaPredicted RBP12.8□□□□□ -0.36
PTPRF-212ENST00000477970 SSU72Q9NP77 194 aaKnown RBP12.8□□□□□ -0.36
PTPRF-212ENST00000477970 SLC5A4Q9NY91 659 aa12.8□□□□□ -0.36
PTPRF-212ENST00000477970 NAALADL1Q9UQQ1 740 aa12.8□□□□□ -0.36
PTPRF-212ENST00000477970 A6NJR5 290 aa12.8□□□□□ -0.36
PTPRF-212ENST00000477970 CST8O60676 142 aa12.8□□□□□ -0.36
PTPRF-212ENST00000477970 ECM2O94769 699 aaPredicted RBP12.8□□□□□ -0.36
PTPRF-212ENST00000477970 GNRH1P01148 92 aa12.8□□□□□ -0.36
PTPRF-212ENST00000477970 HOXA11P31270 313 aaPredicted RBP12.8□□□□□ -0.36
PTPRF-212ENST00000477970 VPS41P49754 854 aa12.8□□□□□ -0.36
PTPRF-212ENST00000477970 ACTN3Q08043 901 aaPredicted RBP12.8□□□□□ -0.36
PTPRF-212ENST00000477970 SKIDA1Q1XH10 827 aa12.8□□□□□ -0.36
PTPRF-212ENST00000477970 TMEM110Q86TL2 294 aa12.8□□□□□ -0.36
PTPRF-212ENST00000477970 CCDC197Q8NCU1 140 aa12.8□□□□□ -0.36
PTPRF-212ENST00000477970 CKAP2Q8WWK9 683 aa12.8□□□□□ -0.36
PTPRF-212ENST00000477970 KIF12Q96FN5 646 aa12.8□□□□□ -0.36
PTPRF-212ENST00000477970 CABS1Q96KC9 395 aa12.8□□□□□ -0.36
PTPRF-212ENST00000477970 TBCBQ99426 244 aa12.8□□□□□ -0.36
PTPRF-212ENST00000477970 PRMT1Q99873 361 aaKnown RBP12.8□□□□□ -0.36
PTPRF-212ENST00000477970 TSPAN16Q9UKR8 245 aa12.8□□□□□ -0.36
PTPRF-212ENST00000477970 TMEM120BA0PK00 339 aa12.79□□□□□ -0.36
PTPRF-212ENST00000477970 PRPF4O43172 522 aaKnown RBP eCLIP12.79□□□□□ -0.36
PTPRF-212ENST00000477970 F2P00734 622 aa12.79□□□□□ -0.36
PTPRF-212ENST00000477970 GCAP28676 217 aa12.79□□□□□ -0.36
PTPRF-212ENST00000477970 XKR4Q5GH76 650 aa12.79□□□□□ -0.36
PTPRF-212ENST00000477970 COL13A1Q5TAT6 717 aaPredicted RBP12.79□□□□□ -0.36
PTPRF-212ENST00000477970 PPP1R21Q6ZMI0 780 aa12.79□□□□□ -0.36
PTPRF-212ENST00000477970 LIMS2Q7Z4I7 341 aa12.79□□□□□ -0.36
PTPRF-212ENST00000477970 ANKS4BQ8N8V4 417 aa12.79□□□□□ -0.36
PTPRF-212ENST00000477970 ZNF296Q8WUU4 475 aaPredicted RBP12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms