RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 NFIL3Q16649 462 aa15.03■□□□□ -0
UPF3A-204ENST00000475218 ZNF699Q32M78 642 aa15.03■□□□□ -0
UPF3A-204ENST00000475218 ITPRIPL2Q3MIP1 535 aa15.03■□□□□ -0
UPF3A-204ENST00000475218 SCARA5Q6ZMJ2 495 aa15.03■□□□□ -0
UPF3A-204ENST00000475218 FMR1NBQ8N0W7 255 aaPredicted RBP15.03■□□□□ -0
UPF3A-204ENST00000475218 C8orf48Q96LL4 319 aa15.03■□□□□ -0
UPF3A-204ENST00000475218 KIF9Q9HAQ2 790 aa15.03■□□□□ -0
UPF3A-204ENST00000475218 TRPC7Q9HCX4 862 aa15.03■□□□□ -0
UPF3A-204ENST00000475218 HMGXB4Q9UGU5 601 aa15.03■□□□□ -0
UPF3A-204ENST00000475218 A8MXQ7 604 aa15.03■□□□□ -0
UPF3A-204ENST00000475218 PHACTR2O75167 634 aa15.03■□□□□ -0
UPF3A-204ENST00000475218 AP3M2P53677 418 aa15.03■□□□□ -0
UPF3A-204ENST00000475218 MCCD1P59942 119 aaPredicted RBP15.03■□□□□ -0
UPF3A-204ENST00000475218 FAM160A1Q05DH4 1040 aa15.03■□□□□ -0
UPF3A-204ENST00000475218 DMWDQ09019 674 aa15.03■□□□□ -0
UPF3A-204ENST00000475218 RUNX3Q13761 415 aa15.03■□□□□ -0
UPF3A-204ENST00000475218 CEP135Q66GS9 1140 aa15.03■□□□□ -0
UPF3A-204ENST00000475218 SPOPLQ6IQ16 392 aa15.03■□□□□ -0
UPF3A-204ENST00000475218 PKN3Q6P5Z2 889 aa15.03■□□□□ -0
UPF3A-204ENST00000475218 ZC3H14Q6PJT7 736 aaKnown RBP15.03■□□□□ -0
UPF3A-204ENST00000475218 DENND5BQ6ZUT9 1274 aa15.03■□□□□ -0
UPF3A-204ENST00000475218 SMYD4Q8IYR2 804 aaPredicted RBP15.03■□□□□ -0
UPF3A-204ENST00000475218 GUF1Q8N442 669 aaKnown RBP15.03■□□□□ -0
UPF3A-204ENST00000475218 CEP295NLQ96MC4 621 aa15.03■□□□□ -0
UPF3A-204ENST00000475218 FBRSL1Q9HCM7 1045 aaKnown RBP15.03■□□□□ -0
UPF3A-204ENST00000475218 ZSCAN32Q9NX65 697 aa15.03■□□□□ -0
UPF3A-204ENST00000475218 PCDHGA2Q9Y5H1 932 aa15.03■□□□□ -0
UPF3A-204ENST00000475218 ATP6V1DQ9Y5K8 247 aa15.03■□□□□ -0
UPF3A-204ENST00000475218 ASS1P00966 412 aaKnown RBP15.02□□□□□ -0.01
UPF3A-204ENST00000475218 TRIM49P0CI25 452 aa15.02□□□□□ -0.01
UPF3A-204ENST00000475218 TRIM49CP0CI26 452 aa15.02□□□□□ -0.01
UPF3A-204ENST00000475218 NR2F2P24468 414 aa15.02□□□□□ -0.01
UPF3A-204ENST00000475218 ASPAP45381 313 aa15.02□□□□□ -0.01
UPF3A-204ENST00000475218 PPP3CAQ08209 521 aa15.02□□□□□ -0.01
UPF3A-204ENST00000475218 MTF1Q14872 753 aa15.02□□□□□ -0.01
UPF3A-204ENST00000475218 FSTL4Q6MZW2 842 aa15.02□□□□□ -0.01
UPF3A-204ENST00000475218 DCLK2Q8N568 766 aa15.02□□□□□ -0.01
UPF3A-204ENST00000475218 ENGASEQ8NFI3 743 aa15.02□□□□□ -0.01
UPF3A-204ENST00000475218 KCNK16Q96T55 309 aa15.02□□□□□ -0.01
UPF3A-204ENST00000475218 IER2Q9BTL4 223 aa15.02□□□□□ -0.01
UPF3A-204ENST00000475218 RNF38Q9H0F5 515 aa15.02□□□□□ -0.01
UPF3A-204ENST00000475218 APOBEC3GQ9HC16 384 aaKnown RBP15.02□□□□□ -0.01
UPF3A-204ENST00000475218 THG1LQ9NWX6 298 aaKnown RBP15.02□□□□□ -0.01
UPF3A-204ENST00000475218 TRAV19A0A0A6YYK7 116 aa15.01□□□□□ -0.01
UPF3A-204ENST00000475218 ZNF840PA6NDX5 716 aa15.01□□□□□ -0.01
UPF3A-204ENST00000475218 K7ESF4 209 aa15.01□□□□□ -0.01
UPF3A-204ENST00000475218 IKBKBO14920 756 aa15.01□□□□□ -0.01
UPF3A-204ENST00000475218 TRIM66O15016 1216 aa15.01□□□□□ -0.01
UPF3A-204ENST00000475218 MAPK13O15264 365 aa15.01□□□□□ -0.01
UPF3A-204ENST00000475218 OLFM2O95897 454 aa15.01□□□□□ -0.01
UPF3A-204ENST00000475218 USP17L7P0C7H9 530 aa15.01□□□□□ -0.01
UPF3A-204ENST00000475218 ORC1Q13415 861 aa15.01□□□□□ -0.01
UPF3A-204ENST00000475218 PNOCQ13519 176 aa15.01□□□□□ -0.01
UPF3A-204ENST00000475218 ZNF667Q5HYK9 610 aa15.01□□□□□ -0.01
UPF3A-204ENST00000475218 C1orf228Q6PIY5 440 aa15.01□□□□□ -0.01
UPF3A-204ENST00000475218 FAM35AQ86V20 835 aa15.01□□□□□ -0.01
UPF3A-204ENST00000475218 FUKQ8N0W3 1084 aa15.01□□□□□ -0.01
UPF3A-204ENST00000475218 SPEM1Q8N4L4 309 aa15.01□□□□□ -0.01
UPF3A-204ENST00000475218 SH3RF2Q8TEC5 729 aa15.01□□□□□ -0.01
UPF3A-204ENST00000475218 EZH1Q92800 747 aaPredicted RBP15.01□□□□□ -0.01
UPF3A-204ENST00000475218 ELOVL4Q9GZR5 314 aa15.01□□□□□ -0.01
UPF3A-204ENST00000475218 ARHGAP26Q9UNA1 814 aa15.01□□□□□ -0.01
UPF3A-204ENST00000475218 WNT6Q9Y6F9 365 aa15.01□□□□□ -0.01
UPF3A-204ENST00000475218 MYO16Q9Y6X6 1858 aa15.01□□□□□ -0.01
UPF3A-204ENST00000475218 TNFRSF10BO14763 440 aa15.01□□□□□ -0.01
UPF3A-204ENST00000475218 CALUO43852 315 aaPredicted RBP15.01□□□□□ -0.01
UPF3A-204ENST00000475218 KINO60870 393 aaKnown RBP15.01□□□□□ -0.01
UPF3A-204ENST00000475218 HLA-DRAP01903 254 aa15.01□□□□□ -0.01
UPF3A-204ENST00000475218 CKMP06732 381 aa15.01□□□□□ -0.01
UPF3A-204ENST00000475218 TCF3P15923 654 aa15.01□□□□□ -0.01
UPF3A-204ENST00000475218 VAMP7P51809 220 aa15.01□□□□□ -0.01
UPF3A-204ENST00000475218 EML3Q32P44 896 aa15.01□□□□□ -0.01
UPF3A-204ENST00000475218 TMEM196Q5HYL7 178 aa15.01□□□□□ -0.01
UPF3A-204ENST00000475218 ZMIZ2Q8NF64 920 aa15.01□□□□□ -0.01
UPF3A-204ENST00000475218 EEF2KMTQ96G04 330 aa15.01□□□□□ -0.01
UPF3A-204ENST00000475218 TWNKQ96RR1 684 aa15.01□□□□□ -0.01
UPF3A-204ENST00000475218 EPC1Q9H2F5 836 aa15.01□□□□□ -0.01
UPF3A-204ENST00000475218 LINC00597Q9H2U6 94 aa15.01□□□□□ -0.01
UPF3A-204ENST00000475218 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.01□□□□□ -0.015e-6■■■■■ 31.1
UPF3A-204ENST00000475218 KIAA1549LQ6ZVL6 1849 aa15□□□□□ -0.01
UPF3A-204ENST00000475218 TRDMT1O14717 391 aaKnown RBP15□□□□□ -0.01
UPF3A-204ENST00000475218 BEST1O76090 585 aa15□□□□□ -0.01
UPF3A-204ENST00000475218 PAPSS2O95340 614 aaPredicted RBP15□□□□□ -0.01
UPF3A-204ENST00000475218 OAS1P00973 400 aaKnown RBP15□□□□□ -0.01
UPF3A-204ENST00000475218 HDCP19113 662 aa15□□□□□ -0.01
UPF3A-204ENST00000475218 PGFP49763 221 aa15□□□□□ -0.01
UPF3A-204ENST00000475218 CCR3P51677 355 aa15□□□□□ -0.01
UPF3A-204ENST00000475218 TAF10Q12962 218 aa15□□□□□ -0.01
UPF3A-204ENST00000475218 LRRC32Q14392 662 aa15□□□□□ -0.01
UPF3A-204ENST00000475218 SGSM1Q2NKQ1 1148 aa15□□□□□ -0.01
UPF3A-204ENST00000475218 GAB4Q2WGN9 574 aa15□□□□□ -0.01
UPF3A-204ENST00000475218 DGKKQ5KSL6 1271 aa15□□□□□ -0.01
UPF3A-204ENST00000475218 ACOT1Q86TX2 421 aa15□□□□□ -0.01
UPF3A-204ENST00000475218 SCAMP5Q8TAC9 235 aa15□□□□□ -0.01
UPF3A-204ENST00000475218 TAS1R2Q8TE23 839 aa15□□□□□ -0.01
UPF3A-204ENST00000475218 OSCP1Q8WVF1 389 aa15□□□□□ -0.01
UPF3A-204ENST00000475218 ERCC4Q92889 916 aaPredicted RBP15□□□□□ -0.01
UPF3A-204ENST00000475218 IL37Q9NZH6 218 aa15□□□□□ -0.01
UPF3A-204ENST00000475218 ATG2BQ96BY7 2078 aa14.99□□□□□ -0.01
UPF3A-204ENST00000475218 CCDC130P13994 396 aa14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms