RNA–Protein interactions for RNA: ENST00000474828.1

SCAF11-206, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 757 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-206ENST00000474828 LCLAT1Q6UWP7 414 aa17.95■□□□□ 0.46
SCAF11-206ENST00000474828 DENND5BQ6ZUT9 1274 aa17.95■□□□□ 0.46
SCAF11-206ENST00000474828 PDZD4Q76G19 769 aaPredicted RBP17.95■□□□□ 0.46
SCAF11-206ENST00000474828 FAM71AQ8IYT1 594 aa17.95■□□□□ 0.46
SCAF11-206ENST00000474828 GJD3Q8N144 294 aa17.95■□□□□ 0.46
SCAF11-206ENST00000474828 ANKRD52Q8NB46 1076 aa17.95■□□□□ 0.46
SCAF11-206ENST00000474828 RBBP8NLQ8NC74 664 aaPredicted RBP17.95■□□□□ 0.46
SCAF11-206ENST00000474828 SHKBP1Q8TBC3 707 aa17.95■□□□□ 0.46
SCAF11-206ENST00000474828 GIPC2Q8TF65 315 aa17.95■□□□□ 0.46
SCAF11-206ENST00000474828 TFAP2BQ92481 460 aa17.95■□□□□ 0.46
SCAF11-206ENST00000474828 ACSF2Q96CM8 615 aaPredicted RBP17.95■□□□□ 0.46
SCAF11-206ENST00000474828 TCEAL4Q96EI5 215 aa17.95■□□□□ 0.46
SCAF11-206ENST00000474828 HEXIM2Q96MH2 286 aaKnown RBP17.95■□□□□ 0.46
SCAF11-206ENST00000474828 KCNK16Q96T55 309 aa17.95■□□□□ 0.46
SCAF11-206ENST00000474828 DUSP16Q9BY84 665 aa17.95■□□□□ 0.46
SCAF11-206ENST00000474828 TRPV4Q9HBA0 871 aa17.95■□□□□ 0.46
SCAF11-206ENST00000474828 KRT82Q9NSB4 513 aa17.95■□□□□ 0.46
SCAF11-206ENST00000474828 FAM49BQ9NUQ9 324 aa17.95■□□□□ 0.46
SCAF11-206ENST00000474828 EHD2Q9NZN4 543 aa17.95■□□□□ 0.46
SCAF11-206ENST00000474828 UXTQ9UBK9 157 aaPredicted RBP17.95■□□□□ 0.46
SCAF11-206ENST00000474828 DNAJC12Q9UKB3 198 aa17.95■□□□□ 0.46
SCAF11-206ENST00000474828 MRPS23Q9Y3D9 190 aaKnown RBP17.95■□□□□ 0.46
SCAF11-206ENST00000474828 GREB1Q4ZG55 1949 aa17.95■□□□□ 0.46
SCAF11-206ENST00000474828 PATJQ8NI35 1801 aa17.94■□□□□ 0.46
SCAF11-206ENST00000474828 TADA3O75528 432 aa17.94■□□□□ 0.46
SCAF11-206ENST00000474828 AP1G2O75843 785 aa17.94■□□□□ 0.46
SCAF11-206ENST00000474828 FAM200BP0CF97 657 aa17.94■□□□□ 0.46
SCAF11-206ENST00000474828 NPR3P17342 541 aa17.94■□□□□ 0.46
SCAF11-206ENST00000474828 MTMR3Q13615 1198 aa17.94■□□□□ 0.46
SCAF11-206ENST00000474828 STILQ15468 1287 aa17.94■□□□□ 0.46
SCAF11-206ENST00000474828 SGO2Q562F6 1265 aa17.94■□□□□ 0.46
SCAF11-206ENST00000474828 FKBP15Q5T1M5 1219 aa17.94■□□□□ 0.46
SCAF11-206ENST00000474828 SNX30Q5VWJ9 437 aa17.94■□□□□ 0.46
SCAF11-206ENST00000474828 TTC30AQ86WT1 665 aa17.94■□□□□ 0.46
SCAF11-206ENST00000474828 SCN4BQ8IWT1 228 aa17.94■□□□□ 0.46
SCAF11-206ENST00000474828 TDRD5Q8NAT2 981 aaKnown RBP17.94■□□□□ 0.46
SCAF11-206ENST00000474828 GPR152Q8TDT2 470 aa17.94■□□□□ 0.46
SCAF11-206ENST00000474828 NXPE3Q969Y0 559 aa17.94■□□□□ 0.46
SCAF11-206ENST00000474828 RPGRIP1Q96KN7 1286 aa17.94■□□□□ 0.46
SCAF11-206ENST00000474828 NECAB3Q96P71 396 aaPredicted RBP17.94■□□□□ 0.46
SCAF11-206ENST00000474828 PCDHB4Q9Y5E5 795 aa17.94■□□□□ 0.46
SCAF11-206ENST00000474828 TCF20Q9UGU0 1960 aaKnown RBP17.93■□□□□ 0.46
SCAF11-206ENST00000474828 CEBPBP17676 345 aa17.93■□□□□ 0.46
SCAF11-206ENST00000474828 COL9A1P20849 921 aa17.93■□□□□ 0.46
SCAF11-206ENST00000474828 CDC25CP30307 473 aa17.93■□□□□ 0.46
SCAF11-206ENST00000474828 USP46P62068 366 aa17.93■□□□□ 0.46
SCAF11-206ENST00000474828 NR1I3Q14994 352 aa17.93■□□□□ 0.46
SCAF11-206ENST00000474828 RAB41Q5JT25 222 aa17.93■□□□□ 0.46
SCAF11-206ENST00000474828 SDHAF4Q5VUM1 108 aa17.93■□□□□ 0.46
SCAF11-206ENST00000474828 NUP93Q8N1F7 819 aa17.93■□□□□ 0.46
SCAF11-206ENST00000474828 OVCA2Q8WZ82 227 aa17.93■□□□□ 0.46
SCAF11-206ENST00000474828 STK33Q9BYT3 514 aa17.93■□□□□ 0.46
SCAF11-206ENST00000474828 TSPY26PQ9H489 355 aa17.93■□□□□ 0.46
SCAF11-206ENST00000474828 WDR3Q9UNX4 943 aaKnown RBP eCLIP17.93■□□□□ 0.46
SCAF11-206ENST00000474828 USP3Q9Y6I4 520 aa17.93■□□□□ 0.46
SCAF11-206ENST00000474828 NCOR1O75376 2440 aa17.93■□□□□ 0.46
SCAF11-206ENST00000474828 A0A1W2PQC6 194 aa17.92■□□□□ 0.46
SCAF11-206ENST00000474828 FOXN3O00409 490 aaPredicted RBP17.92■□□□□ 0.46
SCAF11-206ENST00000474828 RTN3O95197 1032 aaPredicted RBP17.92■□□□□ 0.46
SCAF11-206ENST00000474828 ZDHHC11BP0C7U3 371 aa17.92■□□□□ 0.46
SCAF11-206ENST00000474828 PFKLP17858 780 aa17.92■□□□□ 0.46
SCAF11-206ENST00000474828 DDX6P26196 483 aaKnown RBP eCLIP17.92■□□□□ 0.46
SCAF11-206ENST00000474828 ANXA13P27216 316 aa17.92■□□□□ 0.46
SCAF11-206ENST00000474828 GABRR2P28476 465 aa17.92■□□□□ 0.46
SCAF11-206ENST00000474828 PPP3CCP48454 512 aa17.92■□□□□ 0.46
SCAF11-206ENST00000474828 RPL34P49207 117 aaKnown RBP17.92■□□□□ 0.46
SCAF11-206ENST00000474828 JAM2P57087 298 aa17.92■□□□□ 0.46
SCAF11-206ENST00000474828 SYCP1Q15431 976 aa17.92■□□□□ 0.46
SCAF11-206ENST00000474828 GET4Q7L5D6 327 aaPredicted RBP17.92■□□□□ 0.46
SCAF11-206ENST00000474828 NAP1L5Q96NT1 182 aaPredicted RBP17.92■□□□□ 0.46
SCAF11-206ENST00000474828 MED10Q9BTT4 135 aa17.92■□□□□ 0.46
SCAF11-206ENST00000474828 IGSF9Q9P2J2 1179 aa17.92■□□□□ 0.46
SCAF11-206ENST00000474828 TSPAN16Q9UKR8 245 aa17.92■□□□□ 0.46
SCAF11-206ENST00000474828 FHOD1Q9Y613 1164 aa17.92■□□□□ 0.46
SCAF11-206ENST00000474828 A0A1W2PRU2 124 aa17.91■□□□□ 0.46
SCAF11-206ENST00000474828 EPHB6O15197 1021 aa17.91■□□□□ 0.46
SCAF11-206ENST00000474828 TEX33O43247 280 aa17.91■□□□□ 0.46
SCAF11-206ENST00000474828 MYL4P12829 197 aa17.91■□□□□ 0.46
SCAF11-206ENST00000474828 FCARP24071 287 aa17.91■□□□□ 0.46
SCAF11-206ENST00000474828 ADORA2BP29275 332 aa17.91■□□□□ 0.46
SCAF11-206ENST00000474828 CLCN1P35523 988 aa17.91■□□□□ 0.46
SCAF11-206ENST00000474828 PBX1P40424 430 aa17.91■□□□□ 0.46
SCAF11-206ENST00000474828 KIF11P52732 1056 aa17.91■□□□□ 0.46
SCAF11-206ENST00000474828 SLC5A3P53794 718 aa17.91■□□□□ 0.46
SCAF11-206ENST00000474828 BCAT1P54687 386 aa17.91■□□□□ 0.46
SCAF11-206ENST00000474828 MAP3K7CLP57077 242 aa17.91■□□□□ 0.46
SCAF11-206ENST00000474828 UBXN1Q04323 297 aa17.91■□□□□ 0.46
SCAF11-206ENST00000474828 HTR4Q13639 388 aa17.91■□□□□ 0.46
SCAF11-206ENST00000474828 RNF135Q8IUD6 432 aa17.91■□□□□ 0.46
SCAF11-206ENST00000474828 SLC35F5Q8WV83 523 aa17.91■□□□□ 0.46
SCAF11-206ENST00000474828 KCTD13Q8WZ19 329 aa17.91■□□□□ 0.46
SCAF11-206ENST00000474828 ZSWIM3Q96MP5 696 aa17.91■□□□□ 0.46
SCAF11-206ENST00000474828 ASB16Q96NS5 453 aa17.91■□□□□ 0.46
SCAF11-206ENST00000474828 LSM14BQ9BX40 385 aaKnown RBP17.91■□□□□ 0.46
SCAF11-206ENST00000474828 TRIOO75962 3097 aa17.9■□□□□ 0.46
SCAF11-206ENST00000474828 F8VZ95 297 aa17.9■□□□□ 0.46
SCAF11-206ENST00000474828 PES1O00541 588 aaKnown RBP17.9■□□□□ 0.46
SCAF11-206ENST00000474828 XPO1O14980 1071 aaKnown RBP17.9■□□□□ 0.46
SCAF11-206ENST00000474828 OLFM2O95897 454 aa17.9■□□□□ 0.46
SCAF11-206ENST00000474828 SETSIPP0DME0 302 aa17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms