RNA–Protein interactions for RNA: ENST00000473345.5

MCF2L-223, Transcript of MCF.2 cell line derived transforming sequence like, human

TSL 3

Gene MCF2L, Length 399 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MCF2L-223	ENST00000473345	ABCB6	Q9NP58	842 aa		10.32	□□□□□ -0.76
MCF2L-223	ENST00000473345	ARHGAP26	Q9UNA1	814 aa		10.32	□□□□□ -0.76
MCF2L-223	ENST00000473345	TCHH	Q07283	1943 aa		10.32	□□□□□ -0.76
MCF2L-223	ENST00000473345		A0A087X0B3	334 aa		10.31	□□□□□ -0.76
MCF2L-223	ENST00000473345	TRAV19	A0A0A6YYK7	116 aa		10.31	□□□□□ -0.76
MCF2L-223	ENST00000473345	SOBP	A7XYQ1	873 aa		10.31	□□□□□ -0.76
MCF2L-223	ENST00000473345	KHNYN	O15037	678 aa	Known RBP	10.31	□□□□□ -0.76
MCF2L-223	ENST00000473345	KLF8	O95600	359 aa	Predicted RBP	10.31	□□□□□ -0.76
MCF2L-223	ENST00000473345	OLFM2	O95897	454 aa		10.31	□□□□□ -0.76
MCF2L-223	ENST00000473345	ENG	P17813	658 aa		10.31	□□□□□ -0.76
MCF2L-223	ENST00000473345	HDC	P19113	662 aa		10.31	□□□□□ -0.76
MCF2L-223	ENST00000473345	ITPKA	P23677	461 aa		10.31	□□□□□ -0.76
MCF2L-223	ENST00000473345	PAX3	P23760	479 aa		10.31	□□□□□ -0.76
MCF2L-223	ENST00000473345	TIE1	P35590	1138 aa		10.31	□□□□□ -0.76
MCF2L-223	ENST00000473345	SMARCB1	Q12824	385 aa		10.31	□□□□□ -0.76
MCF2L-223	ENST00000473345	NFE2	Q16621	373 aa	Predicted RBP	10.31	□□□□□ -0.76
MCF2L-223	ENST00000473345	CFAP221	Q4G0U5	840 aa		10.31	□□□□□ -0.76
MCF2L-223	ENST00000473345	TRIM61	Q5EBN2	209 aa		10.31	□□□□□ -0.76
MCF2L-223	ENST00000473345	TTC30A	Q86WT1	665 aa		10.31	□□□□□ -0.76
MCF2L-223	ENST00000473345	ADGRF2	Q8IZF7	708 aa		10.31	□□□□□ -0.76
MCF2L-223	ENST00000473345	ADGRG2	Q8IZP9	1017 aa		10.31	□□□□□ -0.76
MCF2L-223	ENST00000473345	KCTD17	Q8N5Z5	321 aa		10.31	□□□□□ -0.76
MCF2L-223	ENST00000473345	ZCCHC14	Q8WYQ9	949 aa	Known RBP	10.31	□□□□□ -0.76
MCF2L-223	ENST00000473345	POMGNT1	Q8WZA1	660 aa		10.31	□□□□□ -0.76
MCF2L-223	ENST00000473345	LARP4B	Q92615	738 aa	Known RBP	10.31	□□□□□ -0.76
MCF2L-223	ENST00000473345	ACD	Q96AP0	544 aa		10.31	□□□□□ -0.76
MCF2L-223	ENST00000473345	CDK5RAP3	Q96JB5	506 aa		10.31	□□□□□ -0.76
MCF2L-223	ENST00000473345	ZFR	Q96KR1	1074 aa	Known RBP	10.31	□□□□□ -0.76
MCF2L-223	ENST00000473345	GZF1	Q9H116	711 aa	Predicted RBP	10.31	□□□□□ -0.76
MCF2L-223	ENST00000473345	SMPD4	Q9NXE4	827 aa		10.31	□□□□□ -0.76
MCF2L-223	ENST00000473345	GDAP2	Q9NXN4	497 aa		10.31	□□□□□ -0.76
MCF2L-223	ENST00000473345	KCNG1	Q9UIX4	513 aa		10.31	□□□□□ -0.76
MCF2L-223	ENST00000473345	ZMYM5	Q9UJ78	669 aa		10.31	□□□□□ -0.76
MCF2L-223	ENST00000473345	GTF3C5	Q9Y5Q8	519 aa	Predicted RBP	10.31	□□□□□ -0.76
MCF2L-223	ENST00000473345	SNX9	Q9Y5X1	595 aa		10.31	□□□□□ -0.76
MCF2L-223	ENST00000473345	PCDH15	Q96QU1	1955 aa		10.31	□□□□□ -0.76
MCF2L-223	ENST00000473345	HELZ	P42694	1942 aa	Known RBP	10.31	□□□□□ -0.76
MCF2L-223	ENST00000473345	THADA	Q6YHU6	1953 aa		10.3	□□□□□ -0.76
MCF2L-223	ENST00000473345	ZNF840P	A6NDX5	716 aa		10.3	□□□□□ -0.76
MCF2L-223	ENST00000473345	OAS1	P00973	400 aa	Known RBP	10.3	□□□□□ -0.76
MCF2L-223	ENST00000473345	BDNF	P23560	247 aa		10.3	□□□□□ -0.76
MCF2L-223	ENST00000473345	GJB2	P29033	226 aa		10.3	□□□□□ -0.76
MCF2L-223	ENST00000473345	HOXD13	P35453	343 aa		10.3	□□□□□ -0.76
MCF2L-223	ENST00000473345	DDIT3	P35638	169 aa		10.3	□□□□□ -0.76
MCF2L-223	ENST00000473345	RPL10A	P62906	217 aa	Known RBP	10.3	□□□□□ -0.76
MCF2L-223	ENST00000473345	TSPY1	Q01534	308 aa		10.3	□□□□□ -0.76
MCF2L-223	ENST00000473345	KDSR	Q06136	332 aa		10.3	□□□□□ -0.76
MCF2L-223	ENST00000473345	SEMA3B	Q13214	749 aa		10.3	□□□□□ -0.76
MCF2L-223	ENST00000473345	DHCR24	Q15392	516 aa		10.3	□□□□□ -0.76
MCF2L-223	ENST00000473345	USP39	Q53GS9	565 aa	Known RBP	10.3	□□□□□ -0.76
MCF2L-223	ENST00000473345	DAB2IP	Q5VWQ8	1189 aa		10.3	□□□□□ -0.76
MCF2L-223	ENST00000473345	PEAR1	Q5VY43	1037 aa	Predicted RBP	10.3	□□□□□ -0.76
MCF2L-223	ENST00000473345	LRSAM1	Q6UWE0	723 aa		10.3	□□□□□ -0.76
MCF2L-223	ENST00000473345	CHCHD4	Q8N4Q1	142 aa		10.3	□□□□□ -0.76
MCF2L-223	ENST00000473345	CSGALNACT2	Q8N6G5	542 aa		10.3	□□□□□ -0.76
MCF2L-223	ENST00000473345	HPS3	Q969F9	1004 aa		10.3	□□□□□ -0.76
MCF2L-223	ENST00000473345	ELMO3	Q96BJ8	720 aa		10.3	□□□□□ -0.76
MCF2L-223	ENST00000473345	CAMK1G	Q96NX5	476 aa		10.3	□□□□□ -0.76
MCF2L-223	ENST00000473345	ACOX2	Q99424	681 aa		10.3	□□□□□ -0.76
MCF2L-223	ENST00000473345	SYT15	Q9BQS2	421 aa		10.3	□□□□□ -0.76
MCF2L-223	ENST00000473345	MRPL45	Q9BRJ2	306 aa	Known RBP	10.3	□□□□□ -0.76
MCF2L-223	ENST00000473345	TTLL2	Q9BWV7	592 aa		10.3	□□□□□ -0.76
MCF2L-223	ENST00000473345	DPEP3	Q9H4B8	488 aa		10.3	□□□□□ -0.76
MCF2L-223	ENST00000473345	PCIF1	Q9H4Z3	704 aa		10.3	□□□□□ -0.76
MCF2L-223	ENST00000473345	EVL	Q9UI08	416 aa	Predicted RBP	10.3	□□□□□ -0.76
MCF2L-223	ENST00000473345	PILRB	Q9UKJ0	227 aa		10.3	□□□□□ -0.76
MCF2L-223	ENST00000473345	CPQ	Q9Y646	472 aa		10.3	□□□□□ -0.76
MCF2L-223	ENST00000473345	PKD1L2	Q7Z442	2459 aa		10.3	□□□□□ -0.76
MCF2L-223	ENST00000473345	ASCC3	Q8N3C0	2202 aa	Known RBP	10.3	□□□□□ -0.76
MCF2L-223	ENST00000473345	ZNF638	Q14966	1978 aa	Known RBP	10.3	□□□□□ -0.76
MCF2L-223	ENST00000473345	FAM208B	Q5VWN6	2430 aa		10.29	□□□□□ -0.76
MCF2L-223	ENST00000473345	DMXL2	Q8TDJ6	3036 aa		10.29	□□□□□ -0.76
MCF2L-223	ENST00000473345		A0A0A0MRY4	1105 aa		10.29	□□□□□ -0.76
MCF2L-223	ENST00000473345	TULP1	O00294	542 aa	Predicted RBP	10.29	□□□□□ -0.76
MCF2L-223	ENST00000473345	TBCA	O75347	108 aa	Known RBP	10.29	□□□□□ -0.76
MCF2L-223	ENST00000473345	IL18RAP	O95256	599 aa		10.29	□□□□□ -0.76
MCF2L-223	ENST00000473345	KRT18	P05783	430 aa	Known RBP	10.29	□□□□□ -0.76
MCF2L-223	ENST00000473345	PDGFRB	P09619	1106 aa		10.29	□□□□□ -0.76
MCF2L-223	ENST00000473345	CD59	P13987	128 aa		10.29	□□□□□ -0.76
MCF2L-223	ENST00000473345	UBA7	P41226	1012 aa		10.29	□□□□□ -0.76
MCF2L-223	ENST00000473345	MAGEA11	P43364	429 aa		10.29	□□□□□ -0.76
MCF2L-223	ENST00000473345	SLC7A9	P82251	487 aa		10.29	□□□□□ -0.76
MCF2L-223	ENST00000473345	POU5F1	Q01860	360 aa	Known RBP	10.29	□□□□□ -0.76
MCF2L-223	ENST00000473345	SF3A1	Q15459	793 aa	Known RBP	10.29	□□□□□ -0.76
MCF2L-223	ENST00000473345	L1TD1	Q5T7N2	865 aa	Known RBP	10.29	□□□□□ -0.76
MCF2L-223	ENST00000473345	SLFN12L	Q6IEE8	588 aa		10.29	□□□□□ -0.76
MCF2L-223	ENST00000473345	FAM173B	Q6P4H8	233 aa		10.29	□□□□□ -0.76
MCF2L-223	ENST00000473345	SPATA2L	Q8IUW3	424 aa	Predicted RBP	10.29	□□□□□ -0.76
MCF2L-223	ENST00000473345	SLC41A1	Q8IVJ1	513 aa		10.29	□□□□□ -0.76
MCF2L-223	ENST00000473345	LRRC52	Q8N7C0	313 aa		10.29	□□□□□ -0.76
MCF2L-223	ENST00000473345	HMGB4	Q8WW32	186 aa		10.29	□□□□□ -0.76
MCF2L-223	ENST00000473345	PCED1B	Q96HM7	432 aa		10.29	□□□□□ -0.76
MCF2L-223	ENST00000473345	TMX3	Q96JJ7	454 aa		10.29	□□□□□ -0.76
MCF2L-223	ENST00000473345	AK8	Q96MA6	479 aa		10.29	□□□□□ -0.76
MCF2L-223	ENST00000473345	ZNF560	Q96MR9	790 aa		10.29	□□□□□ -0.76
MCF2L-223	ENST00000473345	CLIC6	Q96NY7	704 aa		10.29	□□□□□ -0.76
MCF2L-223	ENST00000473345	SLC6A17	Q9H1V8	727 aa		10.29	□□□□□ -0.76
MCF2L-223	ENST00000473345	RBAK	Q9NYW8	714 aa	Predicted RBP	10.29	□□□□□ -0.76
MCF2L-223	ENST00000473345	CFAP97	Q9P2B7	532 aa		10.29	□□□□□ -0.76
MCF2L-223	ENST00000473345	CLIC4	Q9Y696	253 aa		10.29	□□□□□ -0.76

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