RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 TMEM191CA6NGB0 347 aa14.39□□□□□ -0.11
CCDC88A-211ENST00000471947 TSPAN1O60635 241 aa14.39□□□□□ -0.11
CCDC88A-211ENST00000471947 ZC3H11AO75152 810 aaKnown RBP eCLIP14.39□□□□□ -0.11
CCDC88A-211ENST00000471947 LRCH4O75427 683 aa14.39□□□□□ -0.11
CCDC88A-211ENST00000471947 HMGCRP04035 888 aa14.39□□□□□ -0.11
CCDC88A-211ENST00000471947 TFDP3Q5H9I0 405 aa14.39□□□□□ -0.11
CCDC88A-211ENST00000471947 C6orf118Q5T5N4 469 aa14.39□□□□□ -0.11
CCDC88A-211ENST00000471947 ANKRD22Q5VYY1 191 aa14.39□□□□□ -0.11
CCDC88A-211ENST00000471947 OLFML2BQ68BL8 750 aa14.39□□□□□ -0.11
CCDC88A-211ENST00000471947 RCOR2Q8IZ40 523 aa14.39□□□□□ -0.11
CCDC88A-211ENST00000471947 CYP4X1Q8N118 509 aa14.39□□□□□ -0.11
CCDC88A-211ENST00000471947 TMEM40Q8WWA1 233 aa14.39□□□□□ -0.11
CCDC88A-211ENST00000471947 SLITRK1Q96PX8 696 aa14.39□□□□□ -0.11
CCDC88A-211ENST00000471947 ZIC5Q96T25 663 aa14.39□□□□□ -0.11
CCDC88A-211ENST00000471947 UNKQ9C0B0 810 aaKnown RBP14.39□□□□□ -0.11
CCDC88A-211ENST00000471947 HOMER3Q9NSC5 361 aa14.39□□□□□ -0.11
CCDC88A-211ENST00000471947 ASNSD1Q9NWL6 643 aa14.39□□□□□ -0.11
CCDC88A-211ENST00000471947 MMP3P08254 477 aa14.39□□□□□ -0.11
CCDC88A-211ENST00000471947 NDUFV1P49821 464 aa14.39□□□□□ -0.11
CCDC88A-211ENST00000471947 MCL1Q07820 350 aa14.39□□□□□ -0.11
CCDC88A-211ENST00000471947 HIF1AQ16665 826 aa14.39□□□□□ -0.11
CCDC88A-211ENST00000471947 ZNF484Q5JVG2 852 aa14.39□□□□□ -0.11
CCDC88A-211ENST00000471947 SDHAF4Q5VUM1 108 aa14.39□□□□□ -0.11
CCDC88A-211ENST00000471947 AGR3Q8TD06 166 aa14.39□□□□□ -0.11
CCDC88A-211ENST00000471947 XPO6Q96QU8 1125 aaKnown RBP14.39□□□□□ -0.11
CCDC88A-211ENST00000471947 ARHGAP39Q9C0H5 1083 aa14.39□□□□□ -0.11
CCDC88A-211ENST00000471947 EPN3Q9H201 632 aa14.39□□□□□ -0.11
CCDC88A-211ENST00000471947 KCNK1O00180 336 aa14.38□□□□□ -0.11
CCDC88A-211ENST00000471947 RPS6KA5O75582 802 aa14.38□□□□□ -0.11
CCDC88A-211ENST00000471947 ATG7O95352 703 aa14.38□□□□□ -0.11
CCDC88A-211ENST00000471947 AMPD1P23109 780 aa14.38□□□□□ -0.11
CCDC88A-211ENST00000471947 BMPR2Q13873 1038 aa14.38□□□□□ -0.11
CCDC88A-211ENST00000471947 MFSD10Q14728 455 aa14.38□□□□□ -0.11
CCDC88A-211ENST00000471947 WSCD1Q658N2 575 aa14.38□□□□□ -0.11
CCDC88A-211ENST00000471947 MARCOQ9UEW3 520 aaPredicted RBP14.38□□□□□ -0.11
CCDC88A-211ENST00000471947 TNFSF13BQ9Y275 285 aa14.38□□□□□ -0.11
CCDC88A-211ENST00000471947 GOLGA8CPA6NN73 597 aa14.38□□□□□ -0.11
CCDC88A-211ENST00000471947 GPD1P21695 349 aa14.38□□□□□ -0.11
CCDC88A-211ENST00000471947 EIF4BP23588 611 aaKnown RBP14.38□□□□□ -0.11
CCDC88A-211ENST00000471947 RTP1P59025 263 aa14.38□□□□□ -0.11
CCDC88A-211ENST00000471947 CA9Q16790 459 aa14.38□□□□□ -0.11
CCDC88A-211ENST00000471947 TAPT1Q6NXT6 567 aa14.38□□□□□ -0.11
CCDC88A-211ENST00000471947 PLPPR4Q7Z2D5 763 aa14.38□□□□□ -0.11
CCDC88A-211ENST00000471947 PDIK1LQ8N165 341 aa14.38□□□□□ -0.11
CCDC88A-211ENST00000471947 RUNDC3BQ96NL0 473 aa14.38□□□□□ -0.11
CCDC88A-211ENST00000471947 G3BP2Q9UN86 482 aaKnown RBP14.38□□□□□ -0.11
CCDC88A-211ENST00000471947 NAALADL1Q9UQQ1 740 aa14.38□□□□□ -0.11
CCDC88A-211ENST00000471947 CYP1A1P04798 512 aaPredicted RBP14.38□□□□□ -0.11
CCDC88A-211ENST00000471947 HMBSP08397 361 aa14.38□□□□□ -0.11
CCDC88A-211ENST00000471947 C1QBPQ07021 282 aaKnown RBP14.38□□□□□ -0.11
CCDC88A-211ENST00000471947 ACTN3Q08043 901 aaPredicted RBP14.38□□□□□ -0.11
CCDC88A-211ENST00000471947 ADIGQ0VDE8 80 aa14.38□□□□□ -0.11
CCDC88A-211ENST00000471947 PIGHQ14442 188 aaPredicted RBP14.38□□□□□ -0.11
CCDC88A-211ENST00000471947 PKN2Q16513 984 aaKnown RBP14.38□□□□□ -0.11
CCDC88A-211ENST00000471947 MDH1BQ5I0G3 518 aa14.38□□□□□ -0.11
CCDC88A-211ENST00000471947 ZNF677Q86XU0 584 aa14.38□□□□□ -0.11
CCDC88A-211ENST00000471947 ANKS4BQ8N8V4 417 aa14.38□□□□□ -0.11
CCDC88A-211ENST00000471947 APPL2Q8NEU8 664 aa14.38□□□□□ -0.11
CCDC88A-211ENST00000471947 STRIP2Q9ULQ0 834 aa14.38□□□□□ -0.11
CCDC88A-211ENST00000471947 TCRBV7S3A2A0A539 114 aa14.37□□□□□ -0.11
CCDC88A-211ENST00000471947 LRRC37AA6NMS7 1700 aa14.37□□□□□ -0.11
CCDC88A-211ENST00000471947 MAN1A1P33908 653 aa14.37□□□□□ -0.11
CCDC88A-211ENST00000471947 NOTUMQ6P988 496 aa14.37□□□□□ -0.11
CCDC88A-211ENST00000471947 CENPUQ71F23 418 aa14.37□□□□□ -0.11
CCDC88A-211ENST00000471947 GPR152Q8TDT2 470 aa14.37□□□□□ -0.11
CCDC88A-211ENST00000471947 FZD8Q9H461 694 aa14.37□□□□□ -0.11
CCDC88A-211ENST00000471947 KNL1Q8NG31 2342 aa14.37□□□□□ -0.11
CCDC88A-211ENST00000471947 SSC5DA1L4H1 1573 aa14.37□□□□□ -0.11
CCDC88A-211ENST00000471947 FSCN2O14926 492 aa14.37□□□□□ -0.11
CCDC88A-211ENST00000471947 ITIH2P19823 946 aa14.37□□□□□ -0.11
CCDC88A-211ENST00000471947 MSH2P43246 934 aa14.37□□□□□ -0.11
CCDC88A-211ENST00000471947 SCNN1GP51170 649 aa14.37□□□□□ -0.11
CCDC88A-211ENST00000471947 ROR1Q01973 937 aa14.37□□□□□ -0.11
CCDC88A-211ENST00000471947 RNASELQ05823 741 aaKnown RBP14.37□□□□□ -0.11
CCDC88A-211ENST00000471947 TRIM32Q13049 653 aa14.37□□□□□ -0.11
CCDC88A-211ENST00000471947 RFX8Q6ZV50 586 aa14.37□□□□□ -0.11
CCDC88A-211ENST00000471947 VSIG1Q86XK7 387 aa14.37□□□□□ -0.11
CCDC88A-211ENST00000471947 FBXO36Q8NEA4 188 aa14.37□□□□□ -0.11
CCDC88A-211ENST00000471947 SLC7A14Q8TBB6 771 aa14.37□□□□□ -0.11
CCDC88A-211ENST00000471947 XYLT2Q9H1B5 865 aa14.37□□□□□ -0.11
CCDC88A-211ENST00000471947 MFHAS1Q9Y4C4 1052 aa14.37□□□□□ -0.11
CCDC88A-211ENST00000471947 SNX10Q9Y5X0 201 aa14.37□□□□□ -0.11
CCDC88A-211ENST00000471947 LTBP3Q9NS15 1303 aa14.37□□□□□ -0.11
CCDC88A-211ENST00000471947 GOLGA8TH3BQL2 631 aa14.37□□□□□ -0.11
CCDC88A-211ENST00000471947 ASAP2O43150 1006 aa14.37□□□□□ -0.11
CCDC88A-211ENST00000471947 UPP2O95045 317 aa14.37□□□□□ -0.11
CCDC88A-211ENST00000471947 KRT7P08729 469 aa14.37□□□□□ -0.11
CCDC88A-211ENST00000471947 RBL1P28749 1068 aa14.37□□□□□ -0.11
CCDC88A-211ENST00000471947 SULT1E1P49888 294 aa14.37□□□□□ -0.11
CCDC88A-211ENST00000471947 KDM7AQ6ZMT4 941 aa14.37□□□□□ -0.11
CCDC88A-211ENST00000471947 TSHZ1Q6ZSZ6 1077 aa14.37□□□□□ -0.11
CCDC88A-211ENST00000471947 SMC6Q96SB8 1091 aa14.37□□□□□ -0.11
CCDC88A-211ENST00000471947 SPC25Q9HBM1 224 aa14.37□□□□□ -0.11
CCDC88A-211ENST00000471947 ACSS2Q9NR19 701 aa14.37□□□□□ -0.11
CCDC88A-211ENST00000471947 ZDHHC18Q9NUE0 388 aa14.37□□□□□ -0.11
CCDC88A-211ENST00000471947 TPX2Q9ULW0 747 aaKnown RBP14.37□□□□□ -0.11
CCDC88A-211ENST00000471947 BARX2Q9UMQ3 279 aaPredicted RBP14.37□□□□□ -0.11
CCDC88A-211ENST00000471947 INHBAP08476 426 aa14.36□□□□□ -0.11
CCDC88A-211ENST00000471947 RARGP13631 454 aa14.36□□□□□ -0.11
CCDC88A-211ENST00000471947 FNTAP49354 379 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms