RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.66□□□□□ -0.38
VPS13D-204ENST00000469054 TSPAN16Q9UKR8 245 aa12.66□□□□□ -0.38
VPS13D-204ENST00000469054 MAGED2Q9UNF1 606 aaPredicted RBP12.66□□□□□ -0.38
VPS13D-204ENST00000469054 NR2E1Q9Y466 385 aa12.66□□□□□ -0.38
VPS13D-204ENST00000469054 DAAM1Q9Y4D1 1078 aa12.66□□□□□ -0.38
VPS13D-204ENST00000469054 REV3LO60673 3130 aa12.66□□□□□ -0.38
VPS13D-204ENST00000469054 C2CD4DB7Z1M9 353 aa12.65□□□□□ -0.38
VPS13D-204ENST00000469054 O00370 1275 aa12.65□□□□□ -0.38
VPS13D-204ENST00000469054 EPHB6O15197 1021 aa12.65□□□□□ -0.38
VPS13D-204ENST00000469054 MOSPD3O75425 235 aa12.65□□□□□ -0.38
VPS13D-204ENST00000469054 FGF19O95750 216 aa12.65□□□□□ -0.38
VPS13D-204ENST00000469054 NPR3P17342 541 aa12.65□□□□□ -0.38
VPS13D-204ENST00000469054 SP100P23497 879 aaPredicted RBP12.65□□□□□ -0.38
VPS13D-204ENST00000469054 GABRR2P28476 465 aa12.65□□□□□ -0.38
VPS13D-204ENST00000469054 USP8P40818 1118 aa12.65□□□□□ -0.38
VPS13D-204ENST00000469054 POLR2FP61218 127 aaKnown RBP12.65□□□□□ -0.38
VPS13D-204ENST00000469054 STILQ15468 1287 aa12.65□□□□□ -0.38
VPS13D-204ENST00000469054 CNGA2Q16280 664 aa12.65□□□□□ -0.38
VPS13D-204ENST00000469054 LCLAT1Q6UWP7 414 aa12.65□□□□□ -0.38
VPS13D-204ENST00000469054 GAREM2Q75VX8 874 aa12.65□□□□□ -0.38
VPS13D-204ENST00000469054 FAM71AQ8IYT1 594 aa12.65□□□□□ -0.38
VPS13D-204ENST00000469054 NUP93Q8N1F7 819 aa12.65□□□□□ -0.38
VPS13D-204ENST00000469054 ACSF2Q96CM8 615 aaPredicted RBP12.65□□□□□ -0.38
VPS13D-204ENST00000469054 TCEAL4Q96EI5 215 aa12.65□□□□□ -0.38
VPS13D-204ENST00000469054 TRMT2BQ96GJ1 504 aaKnown RBP12.65□□□□□ -0.38
VPS13D-204ENST00000469054 MYADMQ96S97 322 aa12.65□□□□□ -0.38
VPS13D-204ENST00000469054 ZSWIM1Q9BR11 485 aa12.65□□□□□ -0.38
VPS13D-204ENST00000469054 GPR88Q9GZN0 384 aa12.65□□□□□ -0.38
VPS13D-204ENST00000469054 ATXN3LQ9H3M9 355 aa12.65□□□□□ -0.38
VPS13D-204ENST00000469054 IL21Q9HBE4 155 aa12.65□□□□□ -0.38
VPS13D-204ENST00000469054 EHD2Q9NZN4 543 aa12.65□□□□□ -0.38
VPS13D-204ENST00000469054 UXTQ9UBK9 157 aaPredicted RBP12.65□□□□□ -0.38
VPS13D-204ENST00000469054 MTCL1Q9Y4B5 1905 aaKnown RBP12.64□□□□□ -0.39
VPS13D-204ENST00000469054 A0A1W2PQC6 194 aa12.64□□□□□ -0.39
VPS13D-204ENST00000469054 A0A1W2PRU2 124 aa12.64□□□□□ -0.39
VPS13D-204ENST00000469054 C19orf67A6NJJ6 358 aa12.64□□□□□ -0.39
VPS13D-204ENST00000469054 LOC730098B7Z3J9 87 aa12.64□□□□□ -0.39
VPS13D-204ENST00000469054 TNFRSF10BO14763 440 aa12.64□□□□□ -0.39
VPS13D-204ENST00000469054 CYP26A1O43174 497 aa12.64□□□□□ -0.39
VPS13D-204ENST00000469054 CALCAP01258 141 aa12.64□□□□□ -0.39
VPS13D-204ENST00000469054 F11P03951 625 aa12.64□□□□□ -0.39
VPS13D-204ENST00000469054 GJA1P17302 382 aa12.64□□□□□ -0.39
VPS13D-204ENST00000469054 BRD2P25440 801 aaKnown RBP12.64□□□□□ -0.39
VPS13D-204ENST00000469054 CDC25CP30307 473 aa12.64□□□□□ -0.39
VPS13D-204ENST00000469054 GNA15P30679 374 aa12.64□□□□□ -0.39
VPS13D-204ENST00000469054 GBP2P32456 591 aaPredicted RBP12.64□□□□□ -0.39
VPS13D-204ENST00000469054 SLC5A3P53794 718 aa12.64□□□□□ -0.39
VPS13D-204ENST00000469054 BCAT1P54687 386 aa12.64□□□□□ -0.39
VPS13D-204ENST00000469054 SLC8A3P57103 927 aa12.64□□□□□ -0.39
VPS13D-204ENST00000469054 USP46P62068 366 aa12.64□□□□□ -0.39
VPS13D-204ENST00000469054 PTK2Q05397 1052 aa12.64□□□□□ -0.39
VPS13D-204ENST00000469054 PTPN21Q16825 1174 aa12.64□□□□□ -0.39
VPS13D-204ENST00000469054 GOLGA7BQ2TAP0 167 aa12.64□□□□□ -0.39
VPS13D-204ENST00000469054 TTC30AQ86WT1 665 aa12.64□□□□□ -0.39
VPS13D-204ENST00000469054 NPAS3Q8IXF0 933 aa12.64□□□□□ -0.39
VPS13D-204ENST00000469054 TDRD5Q8NAT2 981 aaKnown RBP12.64□□□□□ -0.39
VPS13D-204ENST00000469054 NEK11Q8NG66 645 aa12.64□□□□□ -0.39
VPS13D-204ENST00000469054 SHKBP1Q8TBC3 707 aa12.64□□□□□ -0.39
VPS13D-204ENST00000469054 ADAMTS19Q8TE59 1207 aa12.64□□□□□ -0.39
VPS13D-204ENST00000469054 ZNF606Q8WXB4 792 aa12.64□□□□□ -0.39
VPS13D-204ENST00000469054 ING5Q8WYH8 240 aa12.64□□□□□ -0.39
VPS13D-204ENST00000469054 FGF13Q92913 245 aa12.64□□□□□ -0.39
VPS13D-204ENST00000469054 NECAB3Q96P71 396 aaPredicted RBP12.64□□□□□ -0.39
VPS13D-204ENST00000469054 ANP32EQ9BTT0 268 aa12.64□□□□□ -0.39
VPS13D-204ENST00000469054 TTLL2Q9BWV7 592 aa12.64□□□□□ -0.39
VPS13D-204ENST00000469054 UBXN6Q9BZV1 441 aa12.64□□□□□ -0.39
VPS13D-204ENST00000469054 PNPLA8Q9NP80 782 aa12.64□□□□□ -0.39
VPS13D-204ENST00000469054 ACP6Q9NPH0 428 aa12.64□□□□□ -0.39
VPS13D-204ENST00000469054 COMMD8Q9NX08 183 aa12.64□□□□□ -0.39
VPS13D-204ENST00000469054 HESX1Q9UBX0 185 aa12.64□□□□□ -0.39
VPS13D-204ENST00000469054 CDH7Q9ULB5 785 aa12.64□□□□□ -0.39
VPS13D-204ENST00000469054 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.64□□□□□ -0.39
VPS13D-204ENST00000469054 ZFP37Q9Y6Q3 630 aaPredicted RBP12.64□□□□□ -0.39
VPS13D-204ENST00000469054 HHLA1C9JL84 531 aa12.63□□□□□ -0.39
VPS13D-204ENST00000469054 F8VZ95 297 aa12.63□□□□□ -0.39
VPS13D-204ENST00000469054 NRG2O14511 850 aaPredicted RBP12.63□□□□□ -0.39
VPS13D-204ENST00000469054 MED7O43513 233 aa12.63□□□□□ -0.39
VPS13D-204ENST00000469054 RTN3O95197 1032 aaPredicted RBP12.63□□□□□ -0.39
VPS13D-204ENST00000469054 PNMA6AP0CW24 399 aaPredicted RBP12.63□□□□□ -0.39
VPS13D-204ENST00000469054 LAMP2P13473 410 aa12.63□□□□□ -0.39
VPS13D-204ENST00000469054 CEBPBP17676 345 aa12.63□□□□□ -0.39
VPS13D-204ENST00000469054 YWHAQP27348 245 aa12.63□□□□□ -0.39
VPS13D-204ENST00000469054 CLCN1P35523 988 aa12.63□□□□□ -0.39
VPS13D-204ENST00000469054 BPIFB4P59827 614 aa12.63□□□□□ -0.39
VPS13D-204ENST00000469054 PDE4CQ08493 712 aa12.63□□□□□ -0.39
VPS13D-204ENST00000469054 BST2Q10589 180 aaKnown RBP12.63□□□□□ -0.39
VPS13D-204ENST00000469054 TEAD2Q15562 447 aa12.63□□□□□ -0.39
VPS13D-204ENST00000469054 PKDCCQ504Y2 493 aa12.63□□□□□ -0.39
VPS13D-204ENST00000469054 TMEM150AQ86TG1 271 aa12.63□□□□□ -0.39
VPS13D-204ENST00000469054 PIGZQ86VD9 579 aa12.63□□□□□ -0.39
VPS13D-204ENST00000469054 ZDHHC14Q8IZN3 488 aa12.63□□□□□ -0.39
VPS13D-204ENST00000469054 GJD3Q8N144 294 aa12.63□□□□□ -0.39
VPS13D-204ENST00000469054 UBA3Q8TBC4 463 aa12.63□□□□□ -0.39
VPS13D-204ENST00000469054 MCRS1Q96EZ8 462 aa12.63□□□□□ -0.39
VPS13D-204ENST00000469054 GCNAQ96QF7 691 aa12.63□□□□□ -0.39
VPS13D-204ENST00000469054 SPAG5Q96R06 1193 aa12.63□□□□□ -0.39
VPS13D-204ENST00000469054 UHRF1Q96T88 793 aaPredicted RBP12.63□□□□□ -0.39
VPS13D-204ENST00000469054 NLRC4Q9NPP4 1024 aa12.63□□□□□ -0.39
VPS13D-204ENST00000469054 GDE1Q9NZC3 331 aa12.63□□□□□ -0.39
VPS13D-204ENST00000469054 IL37Q9NZH6 218 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms