RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 CHDHQ8NE62 594 aaPredicted RBP5.64□□□□□ -1.51
HMGB1-207ENST00000468384 TTC16Q8NEE8 873 aa5.64□□□□□ -1.51
HMGB1-207ENST00000468384 HMGB4Q8WW32 186 aa5.64□□□□□ -1.51
HMGB1-207ENST00000468384 SLC7A3Q8WY07 619 aa5.64□□□□□ -1.51
HMGB1-207ENST00000468384 CCDC74AQ96AQ1 378 aa5.64□□□□□ -1.51
HMGB1-207ENST00000468384 HSH2DQ96JZ2 352 aa5.64□□□□□ -1.51
HMGB1-207ENST00000468384 TBC1D32Q96NH3 1257 aa5.64□□□□□ -1.51
HMGB1-207ENST00000468384 CORO1BQ9BR76 489 aa5.64□□□□□ -1.51
HMGB1-207ENST00000468384 RANBP17Q9H2T7 1088 aaKnown RBP5.64□□□□□ -1.51
HMGB1-207ENST00000468384 DCP1AQ9NPI6 582 aaPredicted RBP5.64□□□□□ -1.51
HMGB1-207ENST00000468384 FAM13BQ9NYF5 915 aa5.64□□□□□ -1.51
HMGB1-207ENST00000468384 DMGDHQ9UI17 866 aaKnown RBP5.64□□□□□ -1.51
HMGB1-207ENST00000468384 MMP17Q9ULZ9 603 aa5.64□□□□□ -1.51
HMGB1-207ENST00000468384 SYNPO2Q9UMS6 1093 aa5.64□□□□□ -1.51
HMGB1-207ENST00000468384 CEP131Q9UPN4 1083 aa5.64□□□□□ -1.51
HMGB1-207ENST00000468384 PRG3Q9Y2Y8 225 aaPredicted RBP5.64□□□□□ -1.51
HMGB1-207ENST00000468384 PCDHGB6Q9Y5F9 930 aa5.64□□□□□ -1.51
HMGB1-207ENST00000468384 DIDO1Q9BTC0 2240 aaKnown RBP5.64□□□□□ -1.51
HMGB1-207ENST00000468384 MYH8P13535 1937 aa5.64□□□□□ -1.51
HMGB1-207ENST00000468384 IGHV1OR15-9A0A0B4J2B8 117 aa5.63□□□□□ -1.51
HMGB1-207ENST00000468384 CDRT15L2A8MXV6 281 aa5.63□□□□□ -1.51
HMGB1-207ENST00000468384 TCP11X1B4DZS4 312 aa5.63□□□□□ -1.51
HMGB1-207ENST00000468384 MSI1O43347 362 aaKnown RBP5.63□□□□□ -1.51
HMGB1-207ENST00000468384 NOBOXO60393 691 aa5.63□□□□□ -1.51
HMGB1-207ENST00000468384 MOSPD3O75425 235 aa5.63□□□□□ -1.51
HMGB1-207ENST00000468384 RPLP1P05386 114 aaKnown RBP5.63□□□□□ -1.51
HMGB1-207ENST00000468384 SNRPB2P08579 225 aaKnown RBP5.63□□□□□ -1.51
HMGB1-207ENST00000468384 RARGP13631 454 aa5.63□□□□□ -1.51
HMGB1-207ENST00000468384 BPIP17213 487 aa5.63□□□□□ -1.51
HMGB1-207ENST00000468384 EIF2AK2P19525 551 aaKnown RBP5.63□□□□□ -1.51
HMGB1-207ENST00000468384 NR1D1P20393 614 aa5.63□□□□□ -1.51
HMGB1-207ENST00000468384 ITGA3P26006 1051 aa5.63□□□□□ -1.51
HMGB1-207ENST00000468384 ADH6P28332 368 aa5.63□□□□□ -1.51
HMGB1-207ENST00000468384 PCSK6P29122 969 aa5.63□□□□□ -1.51
HMGB1-207ENST00000468384 SLC1A4P43007 532 aa5.63□□□□□ -1.51
HMGB1-207ENST00000468384 LEPRP48357 1165 aaKnown RBP5.63□□□□□ -1.51
HMGB1-207ENST00000468384 IDH3AP50213 366 aa5.63□□□□□ -1.51
HMGB1-207ENST00000468384 CCT8P50990 548 aa5.63□□□□□ -1.51
HMGB1-207ENST00000468384 ARID5AQ03989 594 aa5.63□□□□□ -1.51
HMGB1-207ENST00000468384 TRIP4Q15650 581 aaPredicted RBP5.63□□□□□ -1.51
HMGB1-207ENST00000468384 USP41Q3LFD5 358 aa5.63□□□□□ -1.51
HMGB1-207ENST00000468384 LONRF3Q496Y0 759 aa5.63□□□□□ -1.51
HMGB1-207ENST00000468384 ARHGEF16Q5VV41 709 aa5.63□□□□□ -1.51
HMGB1-207ENST00000468384 BHLHB9Q6PI77 547 aa5.63□□□□□ -1.51
HMGB1-207ENST00000468384 PRSS55Q6UWB4 352 aaPredicted RBP5.63□□□□□ -1.51
HMGB1-207ENST00000468384 KCTD1Q719H9 257 aa5.63□□□□□ -1.51
HMGB1-207ENST00000468384 RTL10Q7L3V2 364 aa5.63□□□□□ -1.51
HMGB1-207ENST00000468384 NOP9Q86U38 636 aaKnown RBP5.63□□□□□ -1.51
HMGB1-207ENST00000468384 PGBD3Q8N328 593 aa5.63□□□□□ -1.51
HMGB1-207ENST00000468384 CCDC33Q8N5R6 958 aa5.63□□□□□ -1.51
HMGB1-207ENST00000468384 TEX19Q8NA77 164 aa5.63□□□□□ -1.51
HMGB1-207ENST00000468384 TMEM158Q8WZ71 300 aa5.63□□□□□ -1.51
HMGB1-207ENST00000468384 DNASE2BQ8WZ79 361 aa5.63□□□□□ -1.51
HMGB1-207ENST00000468384 LPPQ93052 612 aa5.63□□□□□ -1.51
HMGB1-207ENST00000468384 SUSD3Q96L08 255 aa5.63□□□□□ -1.51
HMGB1-207ENST00000468384 RIOK1Q9BRS2 568 aaKnown RBP5.63□□□□□ -1.51
HMGB1-207ENST00000468384 GRIP2Q9C0E4 1043 aa5.63□□□□□ -1.51
HMGB1-207ENST00000468384 PIH1D3Q9NQM4 214 aaKnown RBP5.63□□□□□ -1.51
HMGB1-207ENST00000468384 COL20A1Q9P218 1284 aa5.63□□□□□ -1.51
HMGB1-207ENST00000468384 GABBR1Q9UBS5 961 aa5.63□□□□□ -1.51
HMGB1-207ENST00000468384 GGT7Q9UJ14 662 aa5.63□□□□□ -1.51
HMGB1-207ENST00000468384 HCN2Q9UL51 889 aa5.63□□□□□ -1.51
HMGB1-207ENST00000468384 NFASCO94856 1347 aa5.63□□□□□ -1.51
HMGB1-207ENST00000468384 PRKDCP78527 4128 aaKnown RBP5.63□□□□□ -1.51
HMGB1-207ENST00000468384 SHANK1Q9Y566 2161 aa5.63□□□□□ -1.51
HMGB1-207ENST00000468384 CROCCQ5TZA2 2017 aa5.62□□□□□ -1.51
HMGB1-207ENST00000468384 HIVEP2P31629 2446 aa5.62□□□□□ -1.51
HMGB1-207ENST00000468384 CYP2D7A0A087X1C5 515 aa5.62□□□□□ -1.51
HMGB1-207ENST00000468384 A0A1B0GVT2 93 aa5.62□□□□□ -1.51
HMGB1-207ENST00000468384 SMIM35A0A1B0GVV1 85 aa5.62□□□□□ -1.51
HMGB1-207ENST00000468384 A0A1W2PNU3 283 aaPredicted RBP5.62□□□□□ -1.51
HMGB1-207ENST00000468384 E2F8A0AVK6 867 aa5.62□□□□□ -1.51
HMGB1-207ENST00000468384 OTOL1A6NHN0 477 aaPredicted RBP5.62□□□□□ -1.51
HMGB1-207ENST00000468384 KCNK3O14649 394 aa5.62□□□□□ -1.51
HMGB1-207ENST00000468384 BCAT2O15382 392 aaPredicted RBP5.62□□□□□ -1.51
HMGB1-207ENST00000468384 SHOX2O60902 331 aaPredicted RBP5.62□□□□□ -1.51
HMGB1-207ENST00000468384 OFD1O75665 1012 aa5.62□□□□□ -1.51
HMGB1-207ENST00000468384 UQCRFS1P1P0C7P4 283 aa5.62□□□□□ -1.51
HMGB1-207ENST00000468384 INSRRP14616 1297 aa5.62□□□□□ -1.51
HMGB1-207ENST00000468384 GJA1P17302 382 aa5.62□□□□□ -1.51
HMGB1-207ENST00000468384 FSTP19883 344 aa5.62□□□□□ -1.51
HMGB1-207ENST00000468384 MCCP23508 829 aa5.62□□□□□ -1.51
HMGB1-207ENST00000468384 SSTR2P30874 369 aa5.62□□□□□ -1.51
HMGB1-207ENST00000468384 USP11P51784 963 aa5.62□□□□□ -1.51
HMGB1-207ENST00000468384 IL9RQ01113 521 aa5.62□□□□□ -1.51
HMGB1-207ENST00000468384 AMPD2Q01433 879 aa5.62□□□□□ -1.51
HMGB1-207ENST00000468384 TGIF1Q15583 401 aa5.62□□□□□ -1.51
HMGB1-207ENST00000468384 KIF19Q2TAC6 998 aa5.62□□□□□ -1.51
HMGB1-207ENST00000468384 LACTB2Q53H82 288 aaPredicted RBP5.62□□□□□ -1.51
HMGB1-207ENST00000468384 METTL7BQ6UX53 244 aa5.62□□□□□ -1.51
HMGB1-207ENST00000468384 CLEC9AQ6UXN8 241 aa5.62□□□□□ -1.51
HMGB1-207ENST00000468384 PDZD4Q76G19 769 aaPredicted RBP5.62□□□□□ -1.51
HMGB1-207ENST00000468384 MCF2L2Q86YR7 1114 aa5.62□□□□□ -1.51
HMGB1-207ENST00000468384 CCDC26Q8TAB7 109 aa5.62□□□□□ -1.51
HMGB1-207ENST00000468384 SYTL5Q8TDW5 730 aaPredicted RBP5.62□□□□□ -1.51
HMGB1-207ENST00000468384 SNX29Q8TEQ0 813 aa5.62□□□□□ -1.51
HMGB1-207ENST00000468384 SDR42E1Q8WUS8 393 aa5.62□□□□□ -1.51
HMGB1-207ENST00000468384 NEUROD6Q96NK8 337 aa5.62□□□□□ -1.51
HMGB1-207ENST00000468384 MTMR9Q96QG7 549 aa5.62□□□□□ -1.51
HMGB1-207ENST00000468384 OSMRQ99650 979 aa5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms