RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 TNK2Q07912 1038 aa20.32■□□□□ 0.84
COL7A1-207ENST00000467985 PDGFRLQ15198 375 aa20.32■□□□□ 0.84
COL7A1-207ENST00000467985 SV2AQ7L0J3 742 aa20.32■□□□□ 0.84
COL7A1-207ENST00000467985 ATRIPQ8WXE1 791 aa20.32■□□□□ 0.84
COL7A1-207ENST00000467985 TTLL2Q9BWV7 592 aa20.32■□□□□ 0.84
COL7A1-207ENST00000467985 DPEP3Q9H4B8 488 aa20.32■□□□□ 0.84
COL7A1-207ENST00000467985 SMYD3Q9H7B4 428 aa20.32■□□□□ 0.84
COL7A1-207ENST00000467985 RMND1Q9NWS8 449 aa20.32■□□□□ 0.84
COL7A1-207ENST00000467985 ZSCAN32Q9NX65 697 aa20.32■□□□□ 0.84
COL7A1-207ENST00000467985 TRPM5Q9NZQ8 1165 aa20.32■□□□□ 0.84
COL7A1-207ENST00000467985 F8VP50 259 aa20.31■□□□□ 0.84
COL7A1-207ENST00000467985 KRT13P13646 458 aa20.31■□□□□ 0.84
COL7A1-207ENST00000467985 PSMC2P35998 433 aaKnown RBP20.31■□□□□ 0.84
COL7A1-207ENST00000467985 NRLP54845 237 aa20.31■□□□□ 0.84
COL7A1-207ENST00000467985 RUNX3Q13761 415 aa20.31■□□□□ 0.84
COL7A1-207ENST00000467985 FAM186BQ8IYM0 893 aa20.31■□□□□ 0.84
COL7A1-207ENST00000467985 ADSSL1Q8N142 457 aa20.31■□□□□ 0.84
COL7A1-207ENST00000467985 SYNPOQ8N3V7 929 aa20.31■□□□□ 0.84
COL7A1-207ENST00000467985 TTC8Q8TAM2 541 aa20.31■□□□□ 0.84
COL7A1-207ENST00000467985 MAPK8IP1Q9UQF2 711 aa20.31■□□□□ 0.84
COL7A1-207ENST00000467985 NME7Q9Y5B8 376 aa20.31■□□□□ 0.84
COL7A1-207ENST00000467985 ASS1P00966 412 aaKnown RBP20.3■□□□□ 0.84
COL7A1-207ENST00000467985 HDCP19113 662 aa20.3■□□□□ 0.84
COL7A1-207ENST00000467985 TRIM21P19474 475 aaKnown RBP20.3■□□□□ 0.84
COL7A1-207ENST00000467985 CDH8P55286 799 aa20.3■□□□□ 0.84
COL7A1-207ENST00000467985 ADAM9Q13443 819 aa20.3■□□□□ 0.84
COL7A1-207ENST00000467985 EDRF1Q3B7T1 1238 aa20.3■□□□□ 0.84
COL7A1-207ENST00000467985 TXNDC11Q6PKC3 985 aa20.3■□□□□ 0.84
COL7A1-207ENST00000467985 FMR1NBQ8N0W7 255 aaPredicted RBP20.3■□□□□ 0.84
COL7A1-207ENST00000467985 SPEM1Q8N4L4 309 aa20.3■□□□□ 0.84
COL7A1-207ENST00000467985 ZBTB44Q8NCP5 570 aa20.3■□□□□ 0.84
COL7A1-207ENST00000467985 NELL1Q92832 810 aa20.3■□□□□ 0.84
COL7A1-207ENST00000467985 EXOC4Q96A65 974 aa20.3■□□□□ 0.84
COL7A1-207ENST00000467985 CYP2S1Q96SQ9 504 aa20.3■□□□□ 0.84
COL7A1-207ENST00000467985 B3GNT5Q9BYG0 378 aa20.3■□□□□ 0.84
COL7A1-207ENST00000467985 GTPBP4Q9BZE4 634 aaKnown RBP20.3■□□□□ 0.84
COL7A1-207ENST00000467985 IMPG2Q9BZV3 1241 aa20.3■□□□□ 0.84
COL7A1-207ENST00000467985 CHMP5Q9NZZ3 219 aa20.3■□□□□ 0.84
COL7A1-207ENST00000467985 GCNT4Q9P109 453 aa20.3■□□□□ 0.84
COL7A1-207ENST00000467985 HOOK1Q9UJC3 728 aaKnown RBP20.3■□□□□ 0.84
COL7A1-207ENST00000467985 DMXL1Q9Y485 3027 aa20.3■□□□□ 0.84
COL7A1-207ENST00000467985 AKAP3O75969 853 aa20.29■□□□□ 0.84
COL7A1-207ENST00000467985 TCF3P15923 654 aa20.29■□□□□ 0.84
COL7A1-207ENST00000467985 PIK3CAP42336 1068 aa20.29■□□□□ 0.84
COL7A1-207ENST00000467985 USP46P62068 366 aa20.29■□□□□ 0.84
COL7A1-207ENST00000467985 MTF1Q14872 753 aa20.29■□□□□ 0.84
COL7A1-207ENST00000467985 ZCWPW2Q504Y3 356 aa20.29■□□□□ 0.84
COL7A1-207ENST00000467985 C1orf220Q5T0J3 134 aa20.29■□□□□ 0.84
COL7A1-207ENST00000467985 SCARA5Q6ZMJ2 495 aa20.29■□□□□ 0.84
COL7A1-207ENST00000467985 UNC93AQ86WB7 457 aa20.29■□□□□ 0.84
COL7A1-207ENST00000467985 ARL14EPQ8N8R7 260 aaPredicted RBP20.29■□□□□ 0.84
COL7A1-207ENST00000467985 SLITRK1Q96PX8 696 aa20.29■□□□□ 0.84
COL7A1-207ENST00000467985 SLC22A12Q96S37 553 aa20.29■□□□□ 0.84
COL7A1-207ENST00000467985 ZNF518BQ9C0D4 1074 aa20.29■□□□□ 0.84
COL7A1-207ENST00000467985 EBF3Q9H4W6 596 aa20.29■□□□□ 0.84
COL7A1-207ENST00000467985 ARHGAP26Q9UNA1 814 aa20.29■□□□□ 0.84
COL7A1-207ENST00000467985 ANAPC1Q9H1A4 1944 aa20.29■□□□□ 0.84
COL7A1-207ENST00000467985 OTOGLQ3ZCN5 2332 aa20.28■□□□□ 0.84
COL7A1-207ENST00000467985 C2orf78A6NCI8 922 aa20.28■□□□□ 0.84
COL7A1-207ENST00000467985 RTN3O95197 1032 aaPredicted RBP20.28■□□□□ 0.84
COL7A1-207ENST00000467985 SMC2O95347 1197 aa20.28■□□□□ 0.84
COL7A1-207ENST00000467985 HLA-DRAP01903 254 aa20.28■□□□□ 0.84
COL7A1-207ENST00000467985 RAP1GAPP47736 663 aa20.28■□□□□ 0.84
COL7A1-207ENST00000467985 CXCL12P48061 93 aa20.28■□□□□ 0.84
COL7A1-207ENST00000467985 USP4Q13107 963 aa20.28■□□□□ 0.84
COL7A1-207ENST00000467985 PON2Q15165 354 aa20.28■□□□□ 0.84
COL7A1-207ENST00000467985 ZNF77Q15935 545 aa20.28■□□□□ 0.84
COL7A1-207ENST00000467985 NUP93Q8N1F7 819 aa20.28■□□□□ 0.84
COL7A1-207ENST00000467985 CPA6Q8N4T0 437 aa20.28■□□□□ 0.84
COL7A1-207ENST00000467985 PDZD8Q8NEN9 1154 aa20.28■□□□□ 0.84
COL7A1-207ENST00000467985 OSCP1Q8WVF1 389 aa20.28■□□□□ 0.84
COL7A1-207ENST00000467985 ATP2A3Q93084 1043 aa20.28■□□□□ 0.84
COL7A1-207ENST00000467985 SMARCD1Q96GM5 515 aa20.28■□□□□ 0.84
COL7A1-207ENST00000467985 GSDMAQ96QA5 445 aa20.28■□□□□ 0.84
COL7A1-207ENST00000467985 MED10Q9BTT4 135 aa20.28■□□□□ 0.84
COL7A1-207ENST00000467985 DNAI2Q9GZS0 605 aa20.28■□□□□ 0.84
COL7A1-207ENST00000467985 HPS4Q9NQG7 708 aa20.28■□□□□ 0.84
COL7A1-207ENST00000467985 DUS2Q9NX74 493 aaKnown RBP20.28■□□□□ 0.84
COL7A1-207ENST00000467985 ZNF840PA6NDX5 716 aa20.27■□□□□ 0.84
COL7A1-207ENST00000467985 CLDN5O00501 218 aa20.27■□□□□ 0.84
COL7A1-207ENST00000467985 GTF2H1P32780 548 aa20.27■□□□□ 0.84
COL7A1-207ENST00000467985 IFNAR2P48551 515 aa20.27■□□□□ 0.84
COL7A1-207ENST00000467985 CACNA2D1P54289 1103 aa20.27■□□□□ 0.84
COL7A1-207ENST00000467985 MCCD1P59942 119 aaPredicted RBP20.27■□□□□ 0.84
COL7A1-207ENST00000467985 GRSF1Q12849 480 aaKnown RBP eCLIP20.27■□□□□ 0.84
COL7A1-207ENST00000467985 PNOCQ13519 176 aa20.27■□□□□ 0.84
COL7A1-207ENST00000467985 CCINQ13939 588 aa20.27■□□□□ 0.84
COL7A1-207ENST00000467985 TRIM68Q6AZZ1 485 aa20.27■□□□□ 0.84
COL7A1-207ENST00000467985 FAM35AQ86V20 835 aa20.27■□□□□ 0.84
COL7A1-207ENST00000467985 CRYBG2Q8N1P7 616 aa20.27■□□□□ 0.84
COL7A1-207ENST00000467985 KIAA1958Q8N8K9 716 aa20.27■□□□□ 0.84
COL7A1-207ENST00000467985 CCDC150Q8NCX0 1101 aa20.27■□□□□ 0.84
COL7A1-207ENST00000467985 OVCA2Q8WZ82 227 aa20.27■□□□□ 0.84
COL7A1-207ENST00000467985 SDCBP2Q9H190 292 aa20.27■□□□□ 0.84
COL7A1-207ENST00000467985 DMAP1Q9NPF5 467 aaPredicted RBP20.27■□□□□ 0.84
COL7A1-207ENST00000467985 HELZP42694 1942 aaKnown RBP20.26■□□□□ 0.83
COL7A1-207ENST00000467985 CETN3O15182 167 aa20.26■□□□□ 0.83
COL7A1-207ENST00000467985 STX10O60499 249 aa20.26■□□□□ 0.83
COL7A1-207ENST00000467985 LILRB5O75023 590 aa20.26■□□□□ 0.83
COL7A1-207ENST00000467985 PAPSS2O95340 614 aaPredicted RBP20.26■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms