RNA–Protein interactions for RNA: ENST00000466532.1

COL9A3-206, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 539 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-206ENST00000466532 WDR72Q3MJ13 1102 aa20.45■□□□□ 0.86
COL9A3-206ENST00000466532 MDH1BQ5I0G3 518 aa20.45■□□□□ 0.86
COL9A3-206ENST00000466532 RESP18Q5W5W9 173 aa20.45■□□□□ 0.86
COL9A3-206ENST00000466532 DENND5BQ6ZUT9 1274 aa20.45■□□□□ 0.86
COL9A3-206ENST00000466532 SH3RF2Q8TEC5 729 aa20.45■□□□□ 0.86
COL9A3-206ENST00000466532 ATP2A3Q93084 1043 aa20.45■□□□□ 0.86
COL9A3-206ENST00000466532 EXOC4Q96A65 974 aa20.45■□□□□ 0.86
COL9A3-206ENST00000466532 CEP295NLQ96MC4 621 aa20.45■□□□□ 0.86
COL9A3-206ENST00000466532 FBRSL1Q9HCM7 1045 aaKnown RBP20.45■□□□□ 0.86
COL9A3-206ENST00000466532 CGNQ9P2M7 1197 aaKnown RBP20.45■□□□□ 0.86
COL9A3-206ENST00000466532 SLC8A2Q9UPR5 921 aa20.45■□□□□ 0.86
COL9A3-206ENST00000466532 NME7Q9Y5B8 376 aa20.45■□□□□ 0.86
COL9A3-206ENST00000466532 PVALEFA0A1B0GWK0 134 aa20.44■□□□□ 0.86
COL9A3-206ENST00000466532 TRIM66O15016 1216 aa20.44■□□□□ 0.86
COL9A3-206ENST00000466532 PXNP49023 591 aaPredicted RBP20.44■□□□□ 0.86
COL9A3-206ENST00000466532 PDE6CP51160 858 aa20.44■□□□□ 0.86
COL9A3-206ENST00000466532 USP46P62068 366 aa20.44■□□□□ 0.86
COL9A3-206ENST00000466532 TRPC3Q13507 836 aa20.44■□□□□ 0.86
COL9A3-206ENST00000466532 EML3Q32P44 896 aa20.44■□□□□ 0.86
COL9A3-206ENST00000466532 NAIF1Q69YI7 327 aaPredicted RBP20.44■□□□□ 0.86
COL9A3-206ENST00000466532 C12orf56Q8IXR9 622 aa20.44■□□□□ 0.86
COL9A3-206ENST00000466532 FAM160A2Q8N612 972 aaPredicted RBP20.44■□□□□ 0.86
COL9A3-206ENST00000466532 ZNF516Q92618 1163 aa20.44■□□□□ 0.86
COL9A3-206ENST00000466532 SEMA4GQ9NTN9 838 aa20.44■□□□□ 0.86
COL9A3-206ENST00000466532 TRPM5Q9NZQ8 1165 aa20.44■□□□□ 0.86
COL9A3-206ENST00000466532 DYNC1LI1Q9Y6G9 523 aaKnown RBP20.44■□□□□ 0.86
COL9A3-206ENST00000466532 F8VP50 259 aa20.43■□□□□ 0.86
COL9A3-206ENST00000466532 EXOC3O60645 756 aa20.43■□□□□ 0.86
COL9A3-206ENST00000466532 FAM163BP0C2L3 166 aa20.43■□□□□ 0.86
COL9A3-206ENST00000466532 MYL6P60660 151 aa20.43■□□□□ 0.86
COL9A3-206ENST00000466532 KNOP1Q1ED39 458 aaKnown RBP20.43■□□□□ 0.86
COL9A3-206ENST00000466532 ATL3Q6DD88 541 aa20.43■□□□□ 0.86
COL9A3-206ENST00000466532 GRAMD1CQ8IYS0 662 aa20.43■□□□□ 0.86
COL9A3-206ENST00000466532 CEP57L1Q8IYX8 460 aa20.43■□□□□ 0.86
COL9A3-206ENST00000466532 CD101Q93033 1021 aa20.43■□□□□ 0.86
COL9A3-206ENST00000466532 GZF1Q9H116 711 aaPredicted RBP20.43■□□□□ 0.86
COL9A3-206ENST00000466532 DPEP3Q9H4B8 488 aa20.43■□□□□ 0.86
COL9A3-206ENST00000466532 EHD2Q9NZN4 543 aa20.43■□□□□ 0.86
COL9A3-206ENST00000466532 NXF1Q9UBU9 619 aaKnown RBP20.43■□□□□ 0.86
COL9A3-206ENST00000466532 CFAP45Q9UL16 551 aa20.43■□□□□ 0.86
COL9A3-206ENST00000466532 ARHGAP26Q9UNA1 814 aa20.43■□□□□ 0.86
COL9A3-206ENST00000466532 SDK1Q7Z5N4 2213 aa20.43■□□□□ 0.86
COL9A3-206ENST00000466532 PHACTR2O75167 634 aa20.42■□□□□ 0.86
COL9A3-206ENST00000466532 STAU1O95793 577 aaKnown RBP20.42■□□□□ 0.86
COL9A3-206ENST00000466532 TCF3P15923 654 aa20.42■□□□□ 0.86
COL9A3-206ENST00000466532 PTPN1P18031 435 aaKnown RBP20.42■□□□□ 0.86
COL9A3-206ENST00000466532 NOP14P78316 857 aaKnown RBP20.42■□□□□ 0.86
COL9A3-206ENST00000466532 PKP1Q13835 747 aa20.42■□□□□ 0.86
COL9A3-206ENST00000466532 FBXO43Q4G163 708 aa20.42■□□□□ 0.86
COL9A3-206ENST00000466532 GAB3Q8WWW8 586 aa20.42■□□□□ 0.86
COL9A3-206ENST00000466532 SYAP1Q96A49 352 aaPredicted RBP20.42■□□□□ 0.86
COL9A3-206ENST00000466532 C8orf48Q96LL4 319 aa20.42■□□□□ 0.86
COL9A3-206ENST00000466532 RTKNQ9BST9 563 aa20.42■□□□□ 0.86
COL9A3-206ENST00000466532 TTLL2Q9BWV7 592 aa20.42■□□□□ 0.86
COL9A3-206ENST00000466532 SERTAD1Q9UHV2 236 aa20.42■□□□□ 0.86
COL9A3-206ENST00000466532 CCDC163A0A0D9SF12 145 aa20.41■□□□□ 0.86
COL9A3-206ENST00000466532 A8MXQ7 604 aa20.41■□□□□ 0.86
COL9A3-206ENST00000466532 CLSTN1O94985 981 aa20.41■□□□□ 0.86
COL9A3-206ENST00000466532 PFKLP17858 780 aa20.41■□□□□ 0.86
COL9A3-206ENST00000466532 ATICP31939 592 aa20.41■□□□□ 0.86
COL9A3-206ENST00000466532 CASP4P49662 377 aa20.41■□□□□ 0.86
COL9A3-206ENST00000466532 DNM1Q05193 864 aaKnown RBP20.41■□□□□ 0.86
COL9A3-206ENST00000466532 NR1H3Q13133 447 aa20.41■□□□□ 0.86
COL9A3-206ENST00000466532 CSRP2Q16527 193 aa20.41■□□□□ 0.86
COL9A3-206ENST00000466532 PRR23CQ6ZRP0 262 aa20.41■□□□□ 0.86
COL9A3-206ENST00000466532 SPRYD3Q8NCJ5 442 aa20.41■□□□□ 0.86
COL9A3-206ENST00000466532 RPLP0P6Q8NHW5 317 aa20.41■□□□□ 0.86
COL9A3-206ENST00000466532 ZNF518BQ9C0D4 1074 aa20.41■□□□□ 0.86
COL9A3-206ENST00000466532 ELOVL4Q9GZR5 314 aa20.41■□□□□ 0.86
COL9A3-206ENST00000466532 LINC00597Q9H2U6 94 aa20.41■□□□□ 0.86
COL9A3-206ENST00000466532 POLR3BQ9NW08 1133 aaPredicted RBP20.41■□□□□ 0.86
COL9A3-206ENST00000466532 NUP205Q92621 2012 aa20.41■□□□□ 0.86
COL9A3-206ENST00000466532 LOC105378220A0A1B0GUY1 285 aaPredicted RBP20.4■□□□□ 0.86
COL9A3-206ENST00000466532 ZNF840PA6NDX5 716 aa20.4■□□□□ 0.86
COL9A3-206ENST00000466532 LEFTY2O00292 366 aa20.4■□□□□ 0.86
COL9A3-206ENST00000466532 KLRC4O43908 158 aa20.4■□□□□ 0.86
COL9A3-206ENST00000466532 RPP40O75818 363 aaKnown RBP20.4■□□□□ 0.86
COL9A3-206ENST00000466532 NFATC1O95644 943 aa20.4■□□□□ 0.86
COL9A3-206ENST00000466532 ABL1P00519 1130 aa20.4■□□□□ 0.86
COL9A3-206ENST00000466532 CCDC192P0DO97 292 aa20.4■□□□□ 0.86
COL9A3-206ENST00000466532 PPP3CCP48454 512 aa20.4■□□□□ 0.86
COL9A3-206ENST00000466532 CACNA2D1P54289 1103 aa20.4■□□□□ 0.86
COL9A3-206ENST00000466532 ZXDBP98169 803 aa20.4■□□□□ 0.86
COL9A3-206ENST00000466532 IFRD2Q12894 506 aaPredicted RBP20.4■□□□□ 0.86
COL9A3-206ENST00000466532 PSMD2Q13200 908 aa20.4■□□□□ 0.86
COL9A3-206ENST00000466532 BIRC3Q13489 604 aa20.4■□□□□ 0.86
COL9A3-206ENST00000466532 TDRD10Q5VZ19 366 aaKnown RBP20.4■□□□□ 0.86
COL9A3-206ENST00000466532 CAMKK1Q8N5S9 505 aa20.4■□□□□ 0.86
COL9A3-206ENST00000466532 B3GALNT2Q8NCR0 500 aa20.4■□□□□ 0.86
COL9A3-206ENST00000466532 GOLGA5Q8TBA6 731 aa20.4■□□□□ 0.86
COL9A3-206ENST00000466532 PLEKHO2Q8TD55 490 aa20.4■□□□□ 0.86
COL9A3-206ENST00000466532 NETO1Q8TDF5 533 aa20.4■□□□□ 0.86
COL9A3-206ENST00000466532 EZH1Q92800 747 aaPredicted RBP20.4■□□□□ 0.86
COL9A3-206ENST00000466532 XYLT2Q9H1B5 865 aa20.4■□□□□ 0.86
COL9A3-206ENST00000466532 DCDC2BA2VCK2 349 aa20.39■□□□□ 0.85
COL9A3-206ENST00000466532 CLDN5O00501 218 aa20.39■□□□□ 0.85
COL9A3-206ENST00000466532 SLFN14P0C7P3 912 aa20.39■□□□□ 0.85
COL9A3-206ENST00000466532 TAF10Q12962 218 aa20.39■□□□□ 0.85
COL9A3-206ENST00000466532 ZNF699Q32M78 642 aa20.39■□□□□ 0.85
COL9A3-206ENST00000466532 CACNA2D4Q7Z3S7 1137 aa20.39■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms