RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 TCEAL3Q969E4 200 aa24.17■■□□□ 1.46
USP4-208ENST00000464168 HSPBP1Q9NZL4 362 aa24.17■■□□□ 1.46
USP4-208ENST00000464168 TRPM5Q9NZQ8 1165 aa24.17■■□□□ 1.46
USP4-208ENST00000464168 ANAPC1Q9H1A4 1944 aa24.17■■□□□ 1.46
USP4-208ENST00000464168 ANTXRLA6NF34 631 aa24.16■■□□□ 1.46
USP4-208ENST00000464168 K7EQS6 105 aa24.16■■□□□ 1.46
USP4-208ENST00000464168 LEFTY2O00292 366 aa24.16■■□□□ 1.46
USP4-208ENST00000464168 RHOBTB1O94844 696 aa24.16■■□□□ 1.46
USP4-208ENST00000464168 NFATC1O95644 943 aa24.16■■□□□ 1.46
USP4-208ENST00000464168 PFKLP17858 780 aa24.16■■□□□ 1.46
USP4-208ENST00000464168 PMLP29590 882 aa24.16■■□□□ 1.46
USP4-208ENST00000464168 PDE6CP51160 858 aa24.16■■□□□ 1.46
USP4-208ENST00000464168 CYP27A1Q02318 531 aa24.16■■□□□ 1.46
USP4-208ENST00000464168 GAB4Q2WGN9 574 aa24.16■■□□□ 1.46
USP4-208ENST00000464168 STXBP4Q6ZWJ1 553 aa24.16■■□□□ 1.46
USP4-208ENST00000464168 WDR49Q8IV35 697 aa24.16■■□□□ 1.46
USP4-208ENST00000464168 MYCBPAPQ8TBZ2 947 aa24.16■■□□□ 1.46
USP4-208ENST00000464168 USP33Q8TEY7 942 aa24.16■■□□□ 1.46
USP4-208ENST00000464168 PCED1BQ96HM7 432 aa24.16■■□□□ 1.46
USP4-208ENST00000464168 CHAMP1Q96JM3 812 aa24.16■■□□□ 1.46
USP4-208ENST00000464168 MMS19Q96T76 1030 aa24.16■■□□□ 1.46
USP4-208ENST00000464168 TTLL2Q9BWV7 592 aa24.16■■□□□ 1.46
USP4-208ENST00000464168 LSM14BQ9BX40 385 aaKnown RBP24.16■■□□□ 1.46
USP4-208ENST00000464168 MTMR6Q9Y217 621 aa24.16■■□□□ 1.46
USP4-208ENST00000464168 FRYQ5TBA9 3013 aa24.16■■□□□ 1.46
USP4-208ENST00000464168 ZNF840PA6NDX5 716 aa24.15■■□□□ 1.46
USP4-208ENST00000464168 CST3P01034 146 aaPredicted RBP24.15■■□□□ 1.46
USP4-208ENST00000464168 DGKEP52429 567 aa24.15■■□□□ 1.46
USP4-208ENST00000464168 TRAPPC11Q7Z392 1133 aa24.15■■□□□ 1.46
USP4-208ENST00000464168 CCDC26Q8TAB7 109 aa24.15■■□□□ 1.46
USP4-208ENST00000464168 MRPL45Q9BRJ2 306 aaKnown RBP24.15■■□□□ 1.46
USP4-208ENST00000464168 RNF38Q9H0F5 515 aa24.15■■□□□ 1.46
USP4-208ENST00000464168 KIAA1586Q9HCI6 787 aa24.15■■□□□ 1.46
USP4-208ENST00000464168 ANGPTL2Q9UKU9 493 aa24.15■■□□□ 1.46
USP4-208ENST00000464168 INVSQ9Y283 1065 aa24.15■■□□□ 1.46
USP4-208ENST00000464168 NME7Q9Y5B8 376 aa24.15■■□□□ 1.46
USP4-208ENST00000464168 BCLAF3A2AJT9 711 aaKnown RBP24.14■■□□□ 1.45
USP4-208ENST00000464168 ANXA13P27216 316 aa24.14■■□□□ 1.45
USP4-208ENST00000464168 GNL1P36915 607 aaPredicted RBP24.14■■□□□ 1.45
USP4-208ENST00000464168 SLC7A9P82251 487 aa24.14■■□□□ 1.45
USP4-208ENST00000464168 CREB5Q02930 508 aa24.14■■□□□ 1.45
USP4-208ENST00000464168 C2orf27AQ580R0 203 aa24.14■■□□□ 1.45
USP4-208ENST00000464168 RNF43Q68DV7 783 aa24.14■■□□□ 1.45
USP4-208ENST00000464168 ADGRG2Q8IZP9 1017 aa24.14■■□□□ 1.45
USP4-208ENST00000464168 TSTD1Q8NFU3 115 aa24.14■■□□□ 1.45
USP4-208ENST00000464168 TNMDQ9H2S6 317 aa24.14■■□□□ 1.45
USP4-208ENST00000464168 KBTBD4Q9NVX7 518 aa24.14■■□□□ 1.45
USP4-208ENST00000464168 ABCA7Q8IZY2 2146 aa24.14■■□□□ 1.45
USP4-208ENST00000464168 F8VP50 259 aa24.13■■□□□ 1.45
USP4-208ENST00000464168 TRIM66O15016 1216 aa24.13■■□□□ 1.45
USP4-208ENST00000464168 KCNK5O95279 499 aa24.13■■□□□ 1.45
USP4-208ENST00000464168 CAVIN2O95810 425 aa24.13■■□□□ 1.45
USP4-208ENST00000464168 NASPP49321 788 aaPredicted RBP24.13■■□□□ 1.45
USP4-208ENST00000464168 SEC13P55735 322 aa24.13■■□□□ 1.45
USP4-208ENST00000464168 NOP14P78316 857 aaKnown RBP24.13■■□□□ 1.45
USP4-208ENST00000464168 E2F4Q16254 413 aa24.13■■□□□ 1.45
USP4-208ENST00000464168 MDH1BQ5I0G3 518 aa24.13■■□□□ 1.45
USP4-208ENST00000464168 EPM2AIP1Q7L775 607 aaPredicted RBP24.13■■□□□ 1.45
USP4-208ENST00000464168 RDH13Q8NBN7 331 aa24.13■■□□□ 1.45
USP4-208ENST00000464168 ZNF507Q8TCN5 953 aa24.13■■□□□ 1.45
USP4-208ENST00000464168 C8orf48Q96LL4 319 aa24.13■■□□□ 1.45
USP4-208ENST00000464168 TRIM9Q9C026 710 aa24.13■■□□□ 1.45
USP4-208ENST00000464168 EHD2Q9NZN4 543 aa24.13■■□□□ 1.45
USP4-208ENST00000464168 EIF3DO15371 548 aaKnown RBP eCLIP24.12■■□□□ 1.45
USP4-208ENST00000464168 TGFB1I1O43294 461 aa24.12■■□□□ 1.45
USP4-208ENST00000464168 TACC1O75410 805 aa24.12■■□□□ 1.45
USP4-208ENST00000464168 OLFM2O95897 454 aa24.12■■□□□ 1.45
USP4-208ENST00000464168 CYP17A1P05093 508 aa24.12■■□□□ 1.45
USP4-208ENST00000464168 DLATP10515 647 aaKnown RBP24.12■■□□□ 1.45
USP4-208ENST00000464168 GBP1P32455 592 aa24.12■■□□□ 1.45
USP4-208ENST00000464168 PPP3CCP48454 512 aa24.12■■□□□ 1.45
USP4-208ENST00000464168 CACNA2D1P54289 1103 aa24.12■■□□□ 1.45
USP4-208ENST00000464168 SHC2P98077 582 aa24.12■■□□□ 1.45
USP4-208ENST00000464168 SNRNP35Q16560 246 aaKnown RBP24.12■■□□□ 1.45
USP4-208ENST00000464168 USP39Q53GS9 565 aaKnown RBP24.12■■□□□ 1.45
USP4-208ENST00000464168 FILIP1Q7Z7B0 1213 aa24.12■■□□□ 1.45
USP4-208ENST00000464168 RASSF3Q86WH2 238 aa24.12■■□□□ 1.45
USP4-208ENST00000464168 KIAA1958Q8N8K9 716 aa24.12■■□□□ 1.45
USP4-208ENST00000464168 TPSD1Q9BZJ3 242 aa24.12■■□□□ 1.45
USP4-208ENST00000464168 LRRC27Q9C0I9 530 aa24.12■■□□□ 1.45
USP4-208ENST00000464168 SNX25Q9H3E2 840 aa24.12■■□□□ 1.45
USP4-208ENST00000464168 TMEM30AQ9NV96 361 aa24.12■■□□□ 1.45
USP4-208ENST00000464168 FAM163BP0C2L3 166 aa24.11■■□□□ 1.45
USP4-208ENST00000464168 PTPN1P18031 435 aaKnown RBP24.11■■□□□ 1.45
USP4-208ENST00000464168 TAF10Q12962 218 aa24.11■■□□□ 1.45
USP4-208ENST00000464168 PMS2CLQ68D20 193 aa24.11■■□□□ 1.45
USP4-208ENST00000464168 HS2ST1Q7LGA3 356 aa24.11■■□□□ 1.45
USP4-208ENST00000464168 CCDC33Q8N5R6 958 aa24.11■■□□□ 1.45
USP4-208ENST00000464168 LINC00301Q8NCQ3 95 aa24.11■■□□□ 1.45
USP4-208ENST00000464168 OR6B3Q8NGW1 331 aa24.11■■□□□ 1.45
USP4-208ENST00000464168 EDEM2Q9BV94 578 aa24.11■■□□□ 1.45
USP4-208ENST00000464168 ZSCAN16Q9H4T2 348 aaPredicted RBP24.11■■□□□ 1.45
USP4-208ENST00000464168 AGPAT3Q9NRZ7 376 aa24.11■■□□□ 1.45
USP4-208ENST00000464168 SMPD4Q9NXE4 827 aa24.11■■□□□ 1.45
USP4-208ENST00000464168 MMP17Q9ULZ9 603 aa24.11■■□□□ 1.45
USP4-208ENST00000464168 CPQQ9Y646 472 aa24.11■■□□□ 1.45
USP4-208ENST00000464168 MYO16Q9Y6X6 1858 aa24.11■■□□□ 1.45
USP4-208ENST00000464168 ABL1P00519 1130 aa24.1■■□□□ 1.45
USP4-208ENST00000464168 OAS1P00973 400 aaKnown RBP24.1■■□□□ 1.45
USP4-208ENST00000464168 TNNI1P19237 187 aa24.1■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms