RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 RAD23BP54727 409 aa12.57□□□□□ -0.4
VPS52-213ENST00000461743 STILQ15468 1287 aa12.57□□□□□ -0.4
VPS52-213ENST00000461743 EXOC3L4Q17RC7 722 aa12.57□□□□□ -0.4
VPS52-213ENST00000461743 TCP11X2Q5H9J9 407 aa12.57□□□□□ -0.4
VPS52-213ENST00000461743 TRIM65Q6PJ69 517 aa12.57□□□□□ -0.4
VPS52-213ENST00000461743 C11orf57Q6ZUT1 292 aaPredicted RBP12.57□□□□□ -0.4
VPS52-213ENST00000461743 PAQR9Q6ZVX9 377 aa12.57□□□□□ -0.4
VPS52-213ENST00000461743 NUP93Q8N1F7 819 aa12.57□□□□□ -0.4
VPS52-213ENST00000461743 SLC4A11Q8NBS3 891 aa12.57□□□□□ -0.4
VPS52-213ENST00000461743 ANKRD20A12PQ8NF67 263 aa12.57□□□□□ -0.4
VPS52-213ENST00000461743 FGF14Q92915 247 aa12.57□□□□□ -0.4
VPS52-213ENST00000461743 MCRS1Q96EZ8 462 aa12.57□□□□□ -0.4
VPS52-213ENST00000461743 CYFIP2Q96F07 1278 aa12.57□□□□□ -0.4
VPS52-213ENST00000461743 SLITRK1Q96PX8 696 aa12.57□□□□□ -0.4
VPS52-213ENST00000461743 NDST4Q9H3R1 872 aa12.57□□□□□ -0.4
VPS52-213ENST00000461743 ZFP14Q9HCL3 533 aa12.57□□□□□ -0.4
VPS52-213ENST00000461743 SLC2A4RGQ9NR83 387 aa12.57□□□□□ -0.4
VPS52-213ENST00000461743 FAM49BQ9NUQ9 324 aa12.57□□□□□ -0.4
VPS52-213ENST00000461743 APEX2Q9UBZ4 518 aa12.57□□□□□ -0.4
VPS52-213ENST00000461743 FAM92AA1XBS5 289 aa12.56□□□□□ -0.4
VPS52-213ENST00000461743 CLDN5O00501 218 aa12.56□□□□□ -0.4
VPS52-213ENST00000461743 CAVIN2O95810 425 aa12.56□□□□□ -0.4
VPS52-213ENST00000461743 ACO1P21399 889 aaKnown RBP12.56□□□□□ -0.4
VPS52-213ENST00000461743 CACNA2D1P54289 1103 aa12.56□□□□□ -0.4
VPS52-213ENST00000461743 SLC8A3P57103 927 aa12.56□□□□□ -0.4
VPS52-213ENST00000461743 PFKPQ01813 784 aa12.56□□□□□ -0.4
VPS52-213ENST00000461743 ORC1Q13415 861 aa12.56□□□□□ -0.4
VPS52-213ENST00000461743 ZNF268Q14587 947 aaPredicted RBP12.56□□□□□ -0.4
VPS52-213ENST00000461743 MEA1Q16626 185 aa12.56□□□□□ -0.4
VPS52-213ENST00000461743 VWA3BQ502W6 1294 aa12.56□□□□□ -0.4
VPS52-213ENST00000461743 SGO2Q562F6 1265 aa12.56□□□□□ -0.4
VPS52-213ENST00000461743 FAM78AQ5JUQ0 283 aa12.56□□□□□ -0.4
VPS52-213ENST00000461743 MIIPQ5JXC2 388 aa12.56□□□□□ -0.4
VPS52-213ENST00000461743 GPR158Q5T848 1215 aa12.56□□□□□ -0.4
VPS52-213ENST00000461743 SDHAF4Q5VUM1 108 aa12.56□□□□□ -0.4
VPS52-213ENST00000461743 PARM1Q6UWI2 310 aa12.56□□□□□ -0.4
VPS52-213ENST00000461743 TRIM67Q6ZTA4 783 aa12.56□□□□□ -0.4
VPS52-213ENST00000461743 CLEC20AQ6ZU45 233 aa12.56□□□□□ -0.4
VPS52-213ENST00000461743 TMEM150AQ86TG1 271 aa12.56□□□□□ -0.4
VPS52-213ENST00000461743 C12orf29Q8N999 325 aa12.56□□□□□ -0.4
VPS52-213ENST00000461743 ZSCAN18Q8TBC5 510 aaPredicted RBP12.56□□□□□ -0.4
VPS52-213ENST00000461743 GPR152Q8TDT2 470 aa12.56□□□□□ -0.4
VPS52-213ENST00000461743 DNASE1L2Q92874 299 aa12.56□□□□□ -0.4
VPS52-213ENST00000461743 DUSP16Q9BY84 665 aa12.56□□□□□ -0.4
VPS52-213ENST00000461743 FBXO44Q9H4M3 255 aa12.56□□□□□ -0.4
VPS52-213ENST00000461743 SAMSN1Q9NSI8 373 aaKnown RBP12.56□□□□□ -0.4
VPS52-213ENST00000461743 TMEM30AQ9NV96 361 aa12.56□□□□□ -0.4
VPS52-213ENST00000461743 IL37Q9NZH6 218 aa12.56□□□□□ -0.4
VPS52-213ENST00000461743 MAGED2Q9UNF1 606 aaPredicted RBP12.56□□□□□ -0.4
VPS52-213ENST00000461743 CNTN6Q9UQ52 1028 aa12.56□□□□□ -0.4
VPS52-213ENST00000461743 DAAM1Q9Y4D1 1078 aa12.56□□□□□ -0.4
VPS52-213ENST00000461743 COL4A3Q01955 1670 aa12.56□□□□□ -0.4
VPS52-213ENST00000461743 PRR33A8MZF0 331 aa12.55□□□□□ -0.4
VPS52-213ENST00000461743 NRG2O14511 850 aaPredicted RBP12.55□□□□□ -0.4
VPS52-213ENST00000461743 TNFRSF10BO14763 440 aa12.55□□□□□ -0.4
VPS52-213ENST00000461743 VDRP11473 427 aa12.55□□□□□ -0.4
VPS52-213ENST00000461743 ADORA2BP29275 332 aa12.55□□□□□ -0.4
VPS52-213ENST00000461743 AVPR1AP37288 418 aa12.55□□□□□ -0.4
VPS52-213ENST00000461743 TUBP50607 506 aa12.55□□□□□ -0.4
VPS52-213ENST00000461743 ZNF132P52740 706 aa12.55□□□□□ -0.4
VPS52-213ENST00000461743 SLC5A3P53794 718 aa12.55□□□□□ -0.4
VPS52-213ENST00000461743 BCAT1P54687 386 aa12.55□□□□□ -0.4
VPS52-213ENST00000461743 MFAP3P55082 362 aa12.55□□□□□ -0.4
VPS52-213ENST00000461743 CYP4F8P98187 520 aa12.55□□□□□ -0.4
VPS52-213ENST00000461743 LRMPQ12912 555 aa12.55□□□□□ -0.4
VPS52-213ENST00000461743 TMEM31Q5JXX7 168 aa12.55□□□□□ -0.4
VPS52-213ENST00000461743 PPP1R26Q5T8A7 1209 aaPredicted RBP12.55□□□□□ -0.4
VPS52-213ENST00000461743 TMEM270Q6UE05 265 aa12.55□□□□□ -0.4
VPS52-213ENST00000461743 BMP8AQ7Z5Y6 402 aa12.55□□□□□ -0.4
VPS52-213ENST00000461743 MON1AQ86VX9 555 aa12.55□□□□□ -0.4
VPS52-213ENST00000461743 CREBRFQ8IUR6 639 aa12.55□□□□□ -0.4
VPS52-213ENST00000461743 ARHGEF19Q8IW93 802 aa12.55□□□□□ -0.4
VPS52-213ENST00000461743 CMTM8Q8IZV2 173 aa12.55□□□□□ -0.4
VPS52-213ENST00000461743 SLC44A3Q8N4M1 653 aa12.55□□□□□ -0.4
VPS52-213ENST00000461743 KIAA1958Q8N8K9 716 aa12.55□□□□□ -0.4
VPS52-213ENST00000461743 HEXIM2Q96MH2 286 aaKnown RBP12.55□□□□□ -0.4
VPS52-213ENST00000461743 SMOQ99835 787 aa12.55□□□□□ -0.4
VPS52-213ENST00000461743 UBXN6Q9BZV1 441 aa12.55□□□□□ -0.4
VPS52-213ENST00000461743 EPHX3Q9H6B9 360 aa12.55□□□□□ -0.4
VPS52-213ENST00000461743 TRPM5Q9NZQ8 1165 aa12.55□□□□□ -0.4
VPS52-213ENST00000461743 WNT16Q9UBV4 365 aa12.55□□□□□ -0.4
VPS52-213ENST00000461743 KIAA1549LQ6ZVL6 1849 aa12.55□□□□□ -0.4
VPS52-213ENST00000461743 F5P12259 2224 aa12.54□□□□□ -0.4
VPS52-213ENST00000461743 TRAV19A0A0A6YYK7 116 aa12.54□□□□□ -0.4
VPS52-213ENST00000461743 TMEM221A6NGB7 291 aa12.54□□□□□ -0.4
VPS52-213ENST00000461743 M0R296 226 aa12.54□□□□□ -0.4
VPS52-213ENST00000461743 SETSIPP0DME0 302 aa12.54□□□□□ -0.4
VPS52-213ENST00000461743 TCF3P15923 654 aa12.54□□□□□ -0.4
VPS52-213ENST00000461743 GJA1P17302 382 aa12.54□□□□□ -0.4
VPS52-213ENST00000461743 PSMC3P17980 439 aa12.54□□□□□ -0.4
VPS52-213ENST00000461743 PON1P27169 355 aa12.54□□□□□ -0.4
VPS52-213ENST00000461743 YWHAQP27348 245 aa12.54□□□□□ -0.4
VPS52-213ENST00000461743 CDR1P51861 262 aa12.54□□□□□ -0.4
VPS52-213ENST00000461743 USP46P62068 366 aa12.54□□□□□ -0.4
VPS52-213ENST00000461743 FCHO2Q0JRZ9 810 aa12.54□□□□□ -0.4
VPS52-213ENST00000461743 BST2Q10589 180 aaKnown RBP12.54□□□□□ -0.4
VPS52-213ENST00000461743 KRT31Q15323 416 aa12.54□□□□□ -0.4
VPS52-213ENST00000461743 ANO6Q4KMQ2 910 aa12.54□□□□□ -0.4
VPS52-213ENST00000461743 ZNF394Q53GI3 561 aa12.54□□□□□ -0.4
VPS52-213ENST00000461743 STXBP5Q5T5C0 1151 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms