RNA–Protein interactions for RNA: ENST00000459756.5

COL7A1-203, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 818 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-203ENST00000459756 ANKRD40Q6AI12 368 aa17.14■□□□□ 0.33
COL7A1-203ENST00000459756 SPOPLQ6IQ16 392 aa17.14■□□□□ 0.33
COL7A1-203ENST00000459756 ZC3H3Q8IXZ2 948 aaKnown RBP17.14■□□□□ 0.33
COL7A1-203ENST00000459756 ZNF687Q8N1G0 1237 aa17.14■□□□□ 0.33
COL7A1-203ENST00000459756 CRYBG2Q8N1P7 616 aa17.14■□□□□ 0.33
COL7A1-203ENST00000459756 FAM3CQ92520 227 aa17.14■□□□□ 0.33
COL7A1-203ENST00000459756 DHTKD1Q96HY7 919 aaPredicted RBP17.14■□□□□ 0.33
COL7A1-203ENST00000459756 MMRN2Q9H8L6 949 aa17.14■□□□□ 0.33
COL7A1-203ENST00000459756 CYP3A43Q9HB55 503 aa17.14■□□□□ 0.33
COL7A1-203ENST00000459756 TRPC7Q9HCX4 862 aa17.14■□□□□ 0.33
COL7A1-203ENST00000459756 TRPM5Q9NZQ8 1165 aa17.14■□□□□ 0.33
COL7A1-203ENST00000459756 CHMP5Q9NZZ3 219 aa17.14■□□□□ 0.33
COL7A1-203ENST00000459756 MAN1B1Q9UKM7 699 aa17.14■□□□□ 0.33
COL7A1-203ENST00000459756 CCL26Q9Y258 94 aa17.14■□□□□ 0.33
COL7A1-203ENST00000459756 KIF26AQ9ULI4 1882 aaPredicted RBP17.14■□□□□ 0.33
COL7A1-203ENST00000459756 MYO15AQ9UKN7 3530 aa17.13■□□□□ 0.33
COL7A1-203ENST00000459756 PROB1E7EW31 1015 aa17.13■□□□□ 0.33
COL7A1-203ENST00000459756 CLDN5O00501 218 aa17.13■□□□□ 0.33
COL7A1-203ENST00000459756 GADD45BO75293 160 aaPredicted RBP17.13■□□□□ 0.33
COL7A1-203ENST00000459756 PFKLP17858 780 aa17.13■□□□□ 0.33
COL7A1-203ENST00000459756 TRIM21P19474 475 aaKnown RBP17.13■□□□□ 0.33
COL7A1-203ENST00000459756 MXI1P50539 228 aa17.13■□□□□ 0.33
COL7A1-203ENST00000459756 NDST1P52848 882 aa17.13■□□□□ 0.33
COL7A1-203ENST00000459756 CACNA2D1P54289 1103 aa17.13■□□□□ 0.33
COL7A1-203ENST00000459756 USP46P62068 366 aa17.13■□□□□ 0.33
COL7A1-203ENST00000459756 INCA1Q0VD86 236 aa17.13■□□□□ 0.33
COL7A1-203ENST00000459756 ACOT1Q86TX2 421 aa17.13■□□□□ 0.33
COL7A1-203ENST00000459756 FAM35AQ86V20 835 aa17.13■□□□□ 0.33
COL7A1-203ENST00000459756 RALGPS2Q86X27 583 aaPredicted RBP17.13■□□□□ 0.33
COL7A1-203ENST00000459756 SMARCD1Q96GM5 515 aa17.13■□□□□ 0.33
COL7A1-203ENST00000459756 ZFYVE19Q96K21 471 aa17.13■□□□□ 0.33
COL7A1-203ENST00000459756 MED10Q9BTT4 135 aa17.13■□□□□ 0.33
COL7A1-203ENST00000459756 NIF3L1Q9GZT8 377 aa17.13■□□□□ 0.33
COL7A1-203ENST00000459756 APOBEC3GQ9HC16 384 aaKnown RBP17.13■□□□□ 0.33
COL7A1-203ENST00000459756 TMEM30AQ9NV96 361 aa17.13■□□□□ 0.33
COL7A1-203ENST00000459756 NDRG2Q9UN36 371 aaKnown RBP17.13■□□□□ 0.33
COL7A1-203ENST00000459756 ANAPC1Q9H1A4 1944 aa17.13■□□□□ 0.33
COL7A1-203ENST00000459756 USP34Q70CQ2 3546 aa17.13■□□□□ 0.33
COL7A1-203ENST00000459756 CKMP06732 381 aa17.12■□□□□ 0.33
COL7A1-203ENST00000459756 CCNE1P24864 410 aa17.12■□□□□ 0.33
COL7A1-203ENST00000459756 PMS1P54277 932 aaKnown RBP17.12■□□□□ 0.33
COL7A1-203ENST00000459756 ITPRIPL2Q3MIP1 535 aa17.12■□□□□ 0.33
COL7A1-203ENST00000459756 CC2D1AQ6P1N0 951 aaPredicted RBP17.12■□□□□ 0.33
COL7A1-203ENST00000459756 PAQR9Q6ZVX9 377 aa17.12■□□□□ 0.33
COL7A1-203ENST00000459756 FUKQ8N0W3 1084 aa17.12■□□□□ 0.33
COL7A1-203ENST00000459756 NUP93Q8N1F7 819 aa17.12■□□□□ 0.33
COL7A1-203ENST00000459756 FBXL13Q8NEE6 735 aa17.12■□□□□ 0.33
COL7A1-203ENST00000459756 FAXDC2Q96IV6 333 aa17.12■□□□□ 0.33
COL7A1-203ENST00000459756 SLITRK1Q96PX8 696 aa17.12■□□□□ 0.33
COL7A1-203ENST00000459756 SLC22A12Q96S37 553 aa17.12■□□□□ 0.33
COL7A1-203ENST00000459756 CYP2S1Q96SQ9 504 aa17.12■□□□□ 0.33
COL7A1-203ENST00000459756 FAM83CQ9BQN1 747 aa17.12■□□□□ 0.33
COL7A1-203ENST00000459756 DNAI2Q9GZS0 605 aa17.12■□□□□ 0.33
COL7A1-203ENST00000459756 DMAP1Q9NPF5 467 aaPredicted RBP17.12■□□□□ 0.33
COL7A1-203ENST00000459756 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.12■□□□□ 0.33
COL7A1-203ENST00000459756 GKN1Q9NS71 199 aa17.12■□□□□ 0.33
COL7A1-203ENST00000459756 SPATA6Q9NWH7 488 aaPredicted RBP17.12■□□□□ 0.33
COL7A1-203ENST00000459756 GTSE1Q9NYZ3 720 aa17.12■□□□□ 0.33
COL7A1-203ENST00000459756 GCNT4Q9P109 453 aa17.12■□□□□ 0.33
COL7A1-203ENST00000459756 HMGXB4Q9UGU5 601 aa17.12■□□□□ 0.33
COL7A1-203ENST00000459756 C2orf78A6NCI8 922 aa17.11■□□□□ 0.33
COL7A1-203ENST00000459756 TRIM49BA6NDI0 452 aa17.11■□□□□ 0.33
COL7A1-203ENST00000459756 ZNF840PA6NDX5 716 aa17.11■□□□□ 0.33
COL7A1-203ENST00000459756 SPECC1L-ADORA2AF8WAN1 911 aa17.11■□□□□ 0.33
COL7A1-203ENST00000459756 RTN3O95197 1032 aaPredicted RBP17.11■□□□□ 0.33
COL7A1-203ENST00000459756 HDCP19113 662 aa17.11■□□□□ 0.33
COL7A1-203ENST00000459756 CTHP32929 405 aa17.11■□□□□ 0.33
COL7A1-203ENST00000459756 UBE2HP62256 183 aa17.11■□□□□ 0.33
COL7A1-203ENST00000459756 TNK2Q07912 1038 aa17.11■□□□□ 0.33
COL7A1-203ENST00000459756 TAF10Q12962 218 aa17.11■□□□□ 0.33
COL7A1-203ENST00000459756 FZD5Q13467 585 aa17.11■□□□□ 0.33
COL7A1-203ENST00000459756 ISM2Q6H9L7 571 aa17.11■□□□□ 0.33
COL7A1-203ENST00000459756 ARL14EPQ8N8R7 260 aaPredicted RBP17.11■□□□□ 0.33
COL7A1-203ENST00000459756 KCNK16Q96T55 309 aa17.11■□□□□ 0.33
COL7A1-203ENST00000459756 IER2Q9BTL4 223 aa17.11■□□□□ 0.33
COL7A1-203ENST00000459756 NT5C1AQ9BXI3 368 aa17.11■□□□□ 0.33
COL7A1-203ENST00000459756 KRT82Q9NSB4 513 aa17.11■□□□□ 0.33
COL7A1-203ENST00000459756 RAB20Q9NX57 234 aa17.11■□□□□ 0.33
COL7A1-203ENST00000459756 ARMCX3Q9UH62 379 aaPredicted RBP17.11■□□□□ 0.33
COL7A1-203ENST00000459756 PATJQ8NI35 1801 aa17.11■□□□□ 0.33
COL7A1-203ENST00000459756 CACNA1IQ9P0X4 2223 aa17.11■□□□□ 0.33
COL7A1-203ENST00000459756 LAMTOR5O43504 91 aa17.1■□□□□ 0.33
COL7A1-203ENST00000459756 AP1G2O75843 785 aa17.1■□□□□ 0.33
COL7A1-203ENST00000459756 CCDC130P13994 396 aa17.1■□□□□ 0.33
COL7A1-203ENST00000459756 CD44P16070 742 aaKnown RBP17.1■□□□□ 0.33
COL7A1-203ENST00000459756 YWHAQP27348 245 aa17.1■□□□□ 0.33
COL7A1-203ENST00000459756 SOX9P48436 509 aa17.1■□□□□ 0.33
COL7A1-203ENST00000459756 ORC1Q13415 861 aa17.1■□□□□ 0.33
COL7A1-203ENST00000459756 MORC3Q14149 939 aa17.1■□□□□ 0.33
COL7A1-203ENST00000459756 PDGFRLQ15198 375 aa17.1■□□□□ 0.33
COL7A1-203ENST00000459756 ZNF77Q15935 545 aa17.1■□□□□ 0.33
COL7A1-203ENST00000459756 DCAF17Q5H9S7 520 aaPredicted RBP17.1■□□□□ 0.33
COL7A1-203ENST00000459756 WDR44Q5JSH3 913 aa17.1■□□□□ 0.33
COL7A1-203ENST00000459756 TCERG1LQ5VWI1 586 aa17.1■□□□□ 0.33
COL7A1-203ENST00000459756 FOXR2Q6PJQ5 311 aa17.1■□□□□ 0.33
COL7A1-203ENST00000459756 FRMD5Q7Z6J6 570 aa17.1■□□□□ 0.33
COL7A1-203ENST00000459756 TTC39CQ8N584 583 aa17.1■□□□□ 0.33
COL7A1-203ENST00000459756 PDZD8Q8NEN9 1154 aa17.1■□□□□ 0.33
COL7A1-203ENST00000459756 SLC2A14Q8TDB8 520 aa17.1■□□□□ 0.33
COL7A1-203ENST00000459756 OVCA2Q8WZ82 227 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms