RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 POF1BQ8WVV4 589 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 TNFRSF25Q93038 417 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 AIFM2Q9BRQ8 373 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 PHF20Q9BVI0 1012 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 SPZ1Q9BXG8 430 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 NAA15Q9BXJ9 866 aaKnown RBP5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 AGXT2Q9BYV1 514 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 CCSER1Q9C0I3 900 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 NKX2-4Q9H2Z4 354 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 PREBQ9HCU5 417 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 C8orf4Q9NR00 106 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 FARSBQ9NSD9 589 aaKnown RBP5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 ADGRE2Q9UHX3 823 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 RASAL2Q9UJF2 1139 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 FBXL21Q9UKT6 434 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 TTC7AQ9ULT0 858 aaPredicted RBP5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 ZNF148Q9UQR1 794 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 TELO2Q9Y4R8 837 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 A0A1B0GVG6 124 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 A0A1W2PQ67 120 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 FAM187AA6NFU0 413 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 CCDC69A6NI79 296 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 ARNTLO00327 626 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 MEIS1O00470 390 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 ADAM11O75078 769 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 RGS9O75916 674 aaPredicted RBP5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 HSPA4LO95757 839 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 RETP07949 1114 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 BMP4P12644 408 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 PHKG2P15735 406 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 PDGFRAP16234 1089 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 POLR2EP19388 210 aaKnown RBP5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 CFL1P23528 166 aaKnown RBP5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 IL32P24001 234 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 AXLP30530 894 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 GUCY1A2P33402 732 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 ABCG1P45844 678 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 ARL4DP49703 201 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 PRR20EP86478 221 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 PRR20CP86479 221 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 PRR20DP86480 221 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 PRR20BP86481 221 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 PRR20AP86496 221 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 PLOD1Q02809 727 aaPredicted RBP5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 DHX34Q14147 1143 aaKnown RBP5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 RFTN1Q14699 578 aaPredicted RBP5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 MAPRE2Q15555 327 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 SNCBQ16143 134 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 CCDC40Q4G0X9 1142 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 BROXQ5VW32 411 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 SLC6A19Q695T7 634 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 STYK1Q6J9G0 422 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 C8orf86Q6ZUL3 223 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 DDX53Q86TM3 631 aaKnown RBP5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 VSIG1Q86XK7 387 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 PALB2Q86YC2 1186 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 CMTR2Q8IYT2 770 aaKnown RBP5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 CADM3Q8N126 398 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 LRRC71Q8N4P6 559 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 FIBCD1Q8N539 461 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 PCSK9Q8NBP7 692 aaKnown RBP5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 SLC4A11Q8NBS3 891 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 AGR3Q8TD06 166 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 DIS3LQ8TF46 1054 aaKnown RBP5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 PPP1R13LQ8WUF5 828 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 RUFY2Q8WXA3 655 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 GJA10Q969M2 543 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 RCC1LQ96I51 464 aaKnown RBP5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 ZNF845Q96IR2 970 aaPredicted RBP5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 CABS1Q96KC9 395 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 TSG101Q99816 390 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 DDX50Q9BQ39 737 aaKnown RBP5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 LLPHQ9BRT6 129 aaKnown RBP5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 DCTPP1Q9H773 170 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 NTN4Q9HB63 628 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 RRAGCQ9HB90 399 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 JPH1Q9HDC5 661 aaPredicted RBP5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 GLRX2Q9NS18 164 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 DNM3Q9UQ16 869 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 GIT1Q9Y2X7 761 aa5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 CHTOPQ9Y3Y2 248 aaKnown RBP5.08□□□□□ -1.6
CCDC88A-209ENST00000456975 PALLDQ8WX93 1383 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 PTPRCP08575 1304 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 CCDC171Q6TFL3 1326 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 A0A1B0GVC2 190 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 E9PMD0 336 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 EYA2O00167 538 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 CCNT1O60563 726 aaKnown RBP5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 MSCO60682 206 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 CTNND1O60716 968 aaKnown RBP5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 APOEP02649 317 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 HMOX1P09601 288 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 DLATP10515 647 aaKnown RBP5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 ACTN1P12814 892 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 ITGA4P13612 1032 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 AKR1B1P15121 316 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 CTRB1P17538 263 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 LSP1P33241 339 aa5.07□□□□□ -1.6
CCDC88A-209ENST00000456975 MTIF2P46199 727 aaKnown RBP5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms