RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 DMXL1Q9Y485 3027 aa12.83□□□□□ -0.36
USP40-210ENST00000454354 SPAG17Q6Q759 2223 aa12.82□□□□□ -0.36
USP40-210ENST00000454354 MYOFQ9NZM1 2061 aa12.82□□□□□ -0.36
USP40-210ENST00000454354 EML5Q05BV3 1969 aa12.82□□□□□ -0.36
USP40-210ENST00000454354 TRAV19A0A0A6YYK7 116 aa12.82□□□□□ -0.36
USP40-210ENST00000454354 GOLGA6L4A6NEF3 574 aa12.82□□□□□ -0.36
USP40-210ENST00000454354 HLA-DRAP01903 254 aa12.82□□□□□ -0.36
USP40-210ENST00000454354 USP17L7P0C7H9 530 aa12.82□□□□□ -0.36
USP40-210ENST00000454354 CHRNB1P11230 501 aa12.82□□□□□ -0.36
USP40-210ENST00000454354 P4HA1P13674 534 aa12.82□□□□□ -0.36
USP40-210ENST00000454354 PSMC2P35998 433 aaKnown RBP12.82□□□□□ -0.36
USP40-210ENST00000454354 ASPAP45381 313 aa12.82□□□□□ -0.36
USP40-210ENST00000454354 RAP1GAPP47736 663 aa12.82□□□□□ -0.36
USP40-210ENST00000454354 SOX9P48436 509 aa12.82□□□□□ -0.36
USP40-210ENST00000454354 KPNA1P52294 538 aaPredicted RBP12.82□□□□□ -0.36
USP40-210ENST00000454354 CACNA2D1P54289 1103 aa12.82□□□□□ -0.36
USP40-210ENST00000454354 CDH8P55286 799 aa12.82□□□□□ -0.36
USP40-210ENST00000454354 USP46P62068 366 aa12.82□□□□□ -0.36
USP40-210ENST00000454354 MTAPQ13126 283 aa12.82□□□□□ -0.36
USP40-210ENST00000454354 ZNF77Q15935 545 aa12.82□□□□□ -0.36
USP40-210ENST00000454354 ITPRIPL2Q3MIP1 535 aa12.82□□□□□ -0.36
USP40-210ENST00000454354 TXNDC11Q6PKC3 985 aa12.82□□□□□ -0.36
USP40-210ENST00000454354 SCARA5Q6ZMJ2 495 aa12.82□□□□□ -0.36
USP40-210ENST00000454354 FAM186BQ8IYM0 893 aa12.82□□□□□ -0.36
USP40-210ENST00000454354 TNIP3Q96KP6 325 aa12.82□□□□□ -0.36
USP40-210ENST00000454354 TIGD1Q96MW7 591 aa12.82□□□□□ -0.36
USP40-210ENST00000454354 GSDMAQ96QA5 445 aa12.82□□□□□ -0.36
USP40-210ENST00000454354 SLC22A12Q96S37 553 aa12.82□□□□□ -0.36
USP40-210ENST00000454354 ZNF518BQ9C0D4 1074 aa12.82□□□□□ -0.36
USP40-210ENST00000454354 HPS4Q9NQG7 708 aa12.82□□□□□ -0.36
USP40-210ENST00000454354 RMND1Q9NWS8 449 aa12.82□□□□□ -0.36
USP40-210ENST00000454354 GPR179Q6PRD1 2367 aa12.82□□□□□ -0.36
USP40-210ENST00000454354 C2orf78A6NCI8 922 aa12.81□□□□□ -0.36
USP40-210ENST00000454354 CKMP06732 381 aa12.81□□□□□ -0.36
USP40-210ENST00000454354 TDGF1P13385 188 aa12.81□□□□□ -0.36
USP40-210ENST00000454354 PIK3CAP42336 1068 aa12.81□□□□□ -0.36
USP40-210ENST00000454354 PPP3CCP48454 512 aa12.81□□□□□ -0.36
USP40-210ENST00000454354 PDE6CP51160 858 aa12.81□□□□□ -0.36
USP40-210ENST00000454354 TNK2Q07912 1038 aa12.81□□□□□ -0.36
USP40-210ENST00000454354 PPP3CAQ08209 521 aa12.81□□□□□ -0.36
USP40-210ENST00000454354 INCA1Q0VD86 236 aa12.81□□□□□ -0.36
USP40-210ENST00000454354 ADAM9Q13443 819 aa12.81□□□□□ -0.36
USP40-210ENST00000454354 LRRC32Q14392 662 aa12.81□□□□□ -0.36
USP40-210ENST00000454354 WDR44Q5JSH3 913 aa12.81□□□□□ -0.36
USP40-210ENST00000454354 ZNF658Q5TYW1 1059 aaPredicted RBP12.81□□□□□ -0.36
USP40-210ENST00000454354 PAQR9Q6ZVX9 377 aa12.81□□□□□ -0.36
USP40-210ENST00000454354 FAM35AQ86V20 835 aa12.81□□□□□ -0.36
USP40-210ENST00000454354 UNC93AQ86WB7 457 aa12.81□□□□□ -0.36
USP40-210ENST00000454354 ZC3H3Q8IXZ2 948 aaKnown RBP12.81□□□□□ -0.36
USP40-210ENST00000454354 ELOA2Q8IYF1 753 aaPredicted RBP12.81□□□□□ -0.36
USP40-210ENST00000454354 SMYD4Q8IYR2 804 aaPredicted RBP12.81□□□□□ -0.36
USP40-210ENST00000454354 ELMO3Q96BJ8 720 aa12.81□□□□□ -0.36
USP40-210ENST00000454354 LMAN1LQ9HAT1 526 aa12.81□□□□□ -0.36
USP40-210ENST00000454354 TRPC7Q9HCX4 862 aa12.81□□□□□ -0.36
USP40-210ENST00000454354 GKN1Q9NS71 199 aa12.81□□□□□ -0.36
USP40-210ENST00000454354 ARHGAP26Q9UNA1 814 aa12.81□□□□□ -0.36
USP40-210ENST00000454354 PCDHGA2Q9Y5H1 932 aa12.81□□□□□ -0.36
USP40-210ENST00000454354 R4GN57 208 aa12.81□□□□□ -0.36
USP40-210ENST00000454354 ATP8B3O60423 1300 aa12.81□□□□□ -0.36
USP40-210ENST00000454354 CLDN5O00501 218 aa12.8□□□□□ -0.36
USP40-210ENST00000454354 OLFM2O95897 454 aa12.8□□□□□ -0.36
USP40-210ENST00000454354 TRIM49P0CI25 452 aa12.8□□□□□ -0.36
USP40-210ENST00000454354 TRIM49CP0CI26 452 aa12.8□□□□□ -0.36
USP40-210ENST00000454354 KRT13P13646 458 aa12.8□□□□□ -0.36
USP40-210ENST00000454354 GTF2H1P32780 548 aa12.8□□□□□ -0.36
USP40-210ENST00000454354 PRCPP42785 496 aa12.8□□□□□ -0.36
USP40-210ENST00000454354 GCLMP48507 274 aa12.8□□□□□ -0.36
USP40-210ENST00000454354 CSTF1Q05048 431 aaKnown RBP12.8□□□□□ -0.36
USP40-210ENST00000454354 RUNX3Q13761 415 aa12.8□□□□□ -0.36
USP40-210ENST00000454354 CCINQ13939 588 aa12.8□□□□□ -0.36
USP40-210ENST00000454354 MTF1Q14872 753 aa12.8□□□□□ -0.36
USP40-210ENST00000454354 PDGFRLQ15198 375 aa12.8□□□□□ -0.36
USP40-210ENST00000454354 DGKKQ5KSL6 1271 aa12.8□□□□□ -0.36
USP40-210ENST00000454354 SPOPLQ6IQ16 392 aa12.8□□□□□ -0.36
USP40-210ENST00000454354 CRYBG2Q8N1P7 616 aa12.8□□□□□ -0.36
USP40-210ENST00000454354 KIAA1958Q8N8K9 716 aa12.8□□□□□ -0.36
USP40-210ENST00000454354 ARL14EPQ8N8R7 260 aaPredicted RBP12.8□□□□□ -0.36
USP40-210ENST00000454354 ZBTB44Q8NCP5 570 aa12.8□□□□□ -0.36
USP40-210ENST00000454354 CHFRQ96EP1 664 aa12.8□□□□□ -0.36
USP40-210ENST00000454354 SMARCD1Q96GM5 515 aa12.8□□□□□ -0.36
USP40-210ENST00000454354 CYP2S1Q96SQ9 504 aa12.8□□□□□ -0.36
USP40-210ENST00000454354 FAM126AQ9BYI3 521 aaPredicted RBP12.8□□□□□ -0.36
USP40-210ENST00000454354 GTPBP4Q9BZE4 634 aaKnown RBP12.8□□□□□ -0.36
USP40-210ENST00000454354 APOBEC3GQ9HC16 384 aaKnown RBP12.8□□□□□ -0.36
USP40-210ENST00000454354 TMEM8AQ9HCN3 771 aa12.8□□□□□ -0.36
USP40-210ENST00000454354 TRPM5Q9NZQ8 1165 aa12.8□□□□□ -0.36
USP40-210ENST00000454354 HMGXB4Q9UGU5 601 aa12.8□□□□□ -0.36
USP40-210ENST00000454354 PCDHA5Q9Y5H7 936 aa12.8□□□□□ -0.36
USP40-210ENST00000454354 CEP250Q9BV73 2442 aa12.8□□□□□ -0.36
USP40-210ENST00000454354 ZNF840PA6NDX5 716 aa12.79□□□□□ -0.36
USP40-210ENST00000454354 OTOL1A6NHN0 477 aaPredicted RBP12.79□□□□□ -0.36
USP40-210ENST00000454354 TNFRSF10BO14763 440 aa12.79□□□□□ -0.36
USP40-210ENST00000454354 LILRB5O75023 590 aa12.79□□□□□ -0.36
USP40-210ENST00000454354 CLSTN1O94985 981 aa12.79□□□□□ -0.36
USP40-210ENST00000454354 RTN3O95197 1032 aaPredicted RBP12.79□□□□□ -0.36
USP40-210ENST00000454354 PAPSS2O95340 614 aaPredicted RBP12.79□□□□□ -0.36
USP40-210ENST00000454354 SMC2O95347 1197 aa12.79□□□□□ -0.36
USP40-210ENST00000454354 OAS1P00973 400 aaKnown RBP12.79□□□□□ -0.36
USP40-210ENST00000454354 LMNAP02545 664 aaKnown RBP12.79□□□□□ -0.36
USP40-210ENST00000454354 HDCP19113 662 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms