RNA–Protein interactions for RNA: ENST00000451053.2

VPS33A-202, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3 BASIC

Gene VPS33A, Length 1,154 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-202ENST00000451053 ARID5BQ14865 1188 aa13.79□□□□□ -0.2
VPS33A-202ENST00000451053 CNGA2Q16280 664 aa13.79□□□□□ -0.2
VPS33A-202ENST00000451053 PKDCCQ504Y2 493 aa13.79□□□□□ -0.2
VPS33A-202ENST00000451053 E4F1Q66K89 784 aaPredicted RBP13.79□□□□□ -0.2
VPS33A-202ENST00000451053 DENND1BQ6P3S1 775 aa13.79□□□□□ -0.2
VPS33A-202ENST00000451053 GPR149Q86SP6 731 aa13.79□□□□□ -0.2
VPS33A-202ENST00000451053 NOP9Q86U38 636 aaKnown RBP13.79□□□□□ -0.2
VPS33A-202ENST00000451053 TC2NQ8N9U0 490 aa13.79□□□□□ -0.2
VPS33A-202ENST00000451053 ANKRD52Q8NB46 1076 aa13.79□□□□□ -0.2
VPS33A-202ENST00000451053 SMRP1Q8NCR6 262 aa13.79□□□□□ -0.2
VPS33A-202ENST00000451053 UBA3Q8TBC4 463 aa13.79□□□□□ -0.2
VPS33A-202ENST00000451053 SYN2Q92777 582 aaPredicted RBP13.79□□□□□ -0.2
VPS33A-202ENST00000451053 C8orf48Q96LL4 319 aa13.79□□□□□ -0.2
VPS33A-202ENST00000451053 DNAJC7Q99615 494 aa13.79□□□□□ -0.2
VPS33A-202ENST00000451053 DUSP16Q9BY84 665 aa13.79□□□□□ -0.2
VPS33A-202ENST00000451053 ADAM7Q9H2U9 754 aa13.79□□□□□ -0.2
VPS33A-202ENST00000451053 CSNK1G1Q9HCP0 422 aa13.79□□□□□ -0.2
VPS33A-202ENST00000451053 ABHD10Q9NUJ1 306 aa13.79□□□□□ -0.2
VPS33A-202ENST00000451053 DNMT3BQ9UBC3 853 aaKnown RBP13.79□□□□□ -0.2
VPS33A-202ENST00000451053 COG5Q9UP83 839 aa13.79□□□□□ -0.2
VPS33A-202ENST00000451053 C2orf16Q68DN1 1984 aa13.78□□□□□ -0.2
VPS33A-202ENST00000451053 GRXCR2A6NFK2 248 aa13.78□□□□□ -0.2
VPS33A-202ENST00000451053 SLC38A8A6NNN8 435 aa13.78□□□□□ -0.2
VPS33A-202ENST00000451053 HHLA1C9JL84 531 aa13.78□□□□□ -0.2
VPS33A-202ENST00000451053 M0QYV0 167 aa13.78□□□□□ -0.2
VPS33A-202ENST00000451053 TULP2O00295 520 aa13.78□□□□□ -0.2
VPS33A-202ENST00000451053 CYP11B1P15538 503 aa13.78□□□□□ -0.2
VPS33A-202ENST00000451053 NPR3P17342 541 aa13.78□□□□□ -0.2
VPS33A-202ENST00000451053 PDE6CP51160 858 aa13.78□□□□□ -0.2
VPS33A-202ENST00000451053 BCAT1P54687 386 aa13.78□□□□□ -0.2
VPS33A-202ENST00000451053 ADKP55263 362 aaKnown RBP13.78□□□□□ -0.2
VPS33A-202ENST00000451053 BPIFB4P59827 614 aa13.78□□□□□ -0.2
VPS33A-202ENST00000451053 NTHL1P78549 312 aa13.78□□□□□ -0.2
VPS33A-202ENST00000451053 TFF2Q03403 129 aa13.78□□□□□ -0.2
VPS33A-202ENST00000451053 ARID5AQ03989 594 aa13.78□□□□□ -0.2
VPS33A-202ENST00000451053 ITIH3Q06033 890 aa13.78□□□□□ -0.2
VPS33A-202ENST00000451053 PDE4CQ08493 712 aa13.78□□□□□ -0.2
VPS33A-202ENST00000451053 VEPH1Q14D04 833 aa13.78□□□□□ -0.2
VPS33A-202ENST00000451053 STILQ15468 1287 aa13.78□□□□□ -0.2
VPS33A-202ENST00000451053 SFMBT2Q5VUG0 894 aa13.78□□□□□ -0.2
VPS33A-202ENST00000451053 TAF3Q5VWG9 929 aa13.78□□□□□ -0.2
VPS33A-202ENST00000451053 GPRIN1Q7Z2K8 1008 aa13.78□□□□□ -0.2
VPS33A-202ENST00000451053 LRRC8AQ8IWT6 810 aa13.78□□□□□ -0.2
VPS33A-202ENST00000451053 HS6ST3Q8IZP7 471 aa13.78□□□□□ -0.2
VPS33A-202ENST00000451053 ELMOD1Q8N336 334 aa13.78□□□□□ -0.2
VPS33A-202ENST00000451053 EPS8L1Q8TE68 723 aa13.78□□□□□ -0.2
VPS33A-202ENST00000451053 SLC20A1Q8WUM9 679 aa13.78□□□□□ -0.2
VPS33A-202ENST00000451053 DDX1Q92499 740 aaKnown RBP13.78□□□□□ -0.2
VPS33A-202ENST00000451053 PSMG2Q969U7 264 aa13.78□□□□□ -0.2
VPS33A-202ENST00000451053 SPATA17Q96L03 361 aa13.78□□□□□ -0.2
VPS33A-202ENST00000451053 ZNF512Q96ME7 567 aaPredicted RBP13.78□□□□□ -0.2
VPS33A-202ENST00000451053 CORO1BQ9BR76 489 aa13.78□□□□□ -0.2
VPS33A-202ENST00000451053 PIDD1Q9HB75 910 aa13.78□□□□□ -0.2
VPS33A-202ENST00000451053 ZNF334Q9HCZ1 680 aaPredicted RBP13.78□□□□□ -0.2
VPS33A-202ENST00000451053 HESX1Q9UBX0 185 aa13.78□□□□□ -0.2
VPS33A-202ENST00000451053 NOCTQ9UK39 431 aaKnown RBP13.78□□□□□ -0.2
VPS33A-202ENST00000451053 USP15Q9Y4E8 981 aaPredicted RBP13.78□□□□□ -0.2
VPS33A-202ENST00000451053 NRG2O14511 850 aaPredicted RBP13.77□□□□□ -0.21
VPS33A-202ENST00000451053 MED7O43513 233 aa13.77□□□□□ -0.21
VPS33A-202ENST00000451053 HMGA1P17096 107 aaKnown RBP13.77□□□□□ -0.21
VPS33A-202ENST00000451053 HNRNPH3P31942 346 aaKnown RBP13.77□□□□□ -0.21
VPS33A-202ENST00000451053 USP46P62068 366 aa13.77□□□□□ -0.21
VPS33A-202ENST00000451053 GOLGA8FQ08AF8 430 aa13.77□□□□□ -0.21
VPS33A-202ENST00000451053 GOLGA8DPQ0D2H9 430 aa13.77□□□□□ -0.21
VPS33A-202ENST00000451053 BST2Q10589 180 aaKnown RBP13.77□□□□□ -0.21
VPS33A-202ENST00000451053 LEXMQ3ZCV2 418 aa13.77□□□□□ -0.21
VPS33A-202ENST00000451053 CES5AQ6NT32 575 aa13.77□□□□□ -0.21
VPS33A-202ENST00000451053 GRASPQ7Z6J2 395 aaPredicted RBP13.77□□□□□ -0.21
VPS33A-202ENST00000451053 DNAJB7Q7Z6W7 309 aaPredicted RBP13.77□□□□□ -0.21
VPS33A-202ENST00000451053 ITIH5Q86UX2 942 aa13.77□□□□□ -0.21
VPS33A-202ENST00000451053 TMC8Q8IU68 726 aa13.77□□□□□ -0.21
VPS33A-202ENST00000451053 PASD1Q8IV76 773 aa13.77□□□□□ -0.21
VPS33A-202ENST00000451053 PATJQ8NI35 1801 aa13.77□□□□□ -0.21
VPS33A-202ENST00000451053 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.77□□□□□ -0.21
VPS33A-202ENST00000451053 SUSD6Q92537 303 aa13.77□□□□□ -0.21
VPS33A-202ENST00000451053 SECISBP2LQ93073 1101 aaKnown RBP13.77□□□□□ -0.21
VPS33A-202ENST00000451053 LRRC3Q9BY71 257 aa13.77□□□□□ -0.21
VPS33A-202ENST00000451053 MAGED2Q9UNF1 606 aaPredicted RBP13.77□□□□□ -0.21
VPS33A-202ENST00000451053 ASB3Q9Y575 518 aa13.77□□□□□ -0.21
VPS33A-202ENST00000451053 TNFRSF10BO14763 440 aa13.76□□□□□ -0.21
VPS33A-202ENST00000451053 XPO1O14980 1071 aaKnown RBP13.76□□□□□ -0.21
VPS33A-202ENST00000451053 MBTPS2O43462 519 aa13.76□□□□□ -0.21
VPS33A-202ENST00000451053 RHOP08100 348 aa13.76□□□□□ -0.21
VPS33A-202ENST00000451053 MMEP08473 750 aa13.76□□□□□ -0.21
VPS33A-202ENST00000451053 SETSIPP0DME0 302 aa13.76□□□□□ -0.21
VPS33A-202ENST00000451053 CSH1P0DML2 217 aa13.76□□□□□ -0.21
VPS33A-202ENST00000451053 CSH2P0DML3 217 aa13.76□□□□□ -0.21
VPS33A-202ENST00000451053 FERP16591 822 aa13.76□□□□□ -0.21
VPS33A-202ENST00000451053 PTPN2P17706 415 aa13.76□□□□□ -0.21
VPS33A-202ENST00000451053 CHRNB2P17787 502 aa13.76□□□□□ -0.21
VPS33A-202ENST00000451053 SLC5A3P53794 718 aa13.76□□□□□ -0.21
VPS33A-202ENST00000451053 CDK17Q00537 523 aa13.76□□□□□ -0.21
VPS33A-202ENST00000451053 IFRD2Q12894 506 aaPredicted RBP13.76□□□□□ -0.21
VPS33A-202ENST00000451053 SMAD4Q13485 552 aaKnown RBP13.76□□□□□ -0.21
VPS33A-202ENST00000451053 ASIC2Q16515 512 aa13.76□□□□□ -0.21
VPS33A-202ENST00000451053 CYP26C1Q6V0L0 522 aa13.76□□□□□ -0.21
VPS33A-202ENST00000451053 DENND5BQ6ZUT9 1274 aa13.76□□□□□ -0.21
VPS33A-202ENST00000451053 IRF2BP2Q7Z5L9 587 aa13.76□□□□□ -0.21
VPS33A-202ENST00000451053 PIGZQ86VD9 579 aa13.76□□□□□ -0.21
VPS33A-202ENST00000451053 SCAMP5Q8TAC9 235 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms