RNA–Protein interactions for RNA: ENST00000450303.6

PRPF40A-204, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-204ENST00000450303 CDH9Q9ULB4 789 aa18.16■□□□□ 0.5
PRPF40A-204ENST00000450303 NME7Q9Y5B8 376 aa18.16■□□□□ 0.5
PRPF40A-204ENST00000450303 CLSTN1O94985 981 aa18.15■□□□□ 0.5
PRPF40A-204ENST00000450303 CSH1P0DML2 217 aa18.15■□□□□ 0.5
PRPF40A-204ENST00000450303 CSH2P0DML3 217 aa18.15■□□□□ 0.5
PRPF40A-204ENST00000450303 GNL1P36915 607 aaPredicted RBP18.15■□□□□ 0.5
PRPF40A-204ENST00000450303 NBL1P41271 181 aa18.15■□□□□ 0.5
PRPF40A-204ENST00000450303 AP3M2P53677 418 aa18.15■□□□□ 0.5
PRPF40A-204ENST00000450303 TNNC1P63316 161 aa18.15■□□□□ 0.5
PRPF40A-204ENST00000450303 DLG4P78352 724 aa18.15■□□□□ 0.5
PRPF40A-204ENST00000450303 CYP27A1Q02318 531 aa18.15■□□□□ 0.5
PRPF40A-204ENST00000450303 BIRC3Q13489 604 aa18.15■□□□□ 0.5
PRPF40A-204ENST00000450303 DCAF17Q5H9S7 520 aaPredicted RBP18.15■□□□□ 0.5
PRPF40A-204ENST00000450303 C1orf210Q8IVY1 113 aa18.15■□□□□ 0.5
PRPF40A-204ENST00000450303 MAB21L3Q8N8X9 362 aa18.15■□□□□ 0.5
PRPF40A-204ENST00000450303 MYLPFQ96A32 169 aa18.15■□□□□ 0.5
PRPF40A-204ENST00000450303 BCO2Q9BYV7 579 aa18.15■□□□□ 0.5
PRPF40A-204ENST00000450303 ABCB6Q9NP58 842 aa18.15■□□□□ 0.5
PRPF40A-204ENST00000450303 SPATA6Q9NWH7 488 aaPredicted RBP18.15■□□□□ 0.5
PRPF40A-204ENST00000450303 PIAS3Q9Y6X2 628 aa18.15■□□□□ 0.5
PRPF40A-204ENST00000450303 KIF26AQ9ULI4 1882 aaPredicted RBP18.15■□□□□ 0.5
PRPF40A-204ENST00000450303 ESPNB1AK53 854 aa18.14■□□□□ 0.49
PRPF40A-204ENST00000450303 PES1O00541 588 aaKnown RBP18.14■□□□□ 0.49
PRPF40A-204ENST00000450303 GFRA3O60609 400 aa18.14■□□□□ 0.49
PRPF40A-204ENST00000450303 PTMAP06454 111 aaKnown RBP18.14■□□□□ 0.49
PRPF40A-204ENST00000450303 BDNFP23560 247 aa18.14■□□□□ 0.49
PRPF40A-204ENST00000450303 PLCB2Q00722 1185 aa18.14■□□□□ 0.49
PRPF40A-204ENST00000450303 CFAP221Q4G0U5 840 aa18.14■□□□□ 0.49
PRPF40A-204ENST00000450303 MDH1BQ5I0G3 518 aa18.14■□□□□ 0.49
PRPF40A-204ENST00000450303 TDRD10Q5VZ19 366 aaKnown RBP18.14■□□□□ 0.49
PRPF40A-204ENST00000450303 TXNDC8Q6A555 127 aa18.14■□□□□ 0.49
PRPF40A-204ENST00000450303 C4orf50Q6ZRC1 276 aa18.14■□□□□ 0.49
PRPF40A-204ENST00000450303 ASCL5Q7RTU5 278 aa18.14■□□□□ 0.49
PRPF40A-204ENST00000450303 TRIM59Q8IWR1 403 aa18.14■□□□□ 0.49
PRPF40A-204ENST00000450303 CSGALNACT1Q8TDX6 532 aa18.14■□□□□ 0.49
PRPF40A-204ENST00000450303 FAM3CQ92520 227 aa18.14■□□□□ 0.49
PRPF40A-204ENST00000450303 OSBPL6Q9BZF3 934 aa18.14■□□□□ 0.49
PRPF40A-204ENST00000450303 XYLT2Q9H1B5 865 aa18.14■□□□□ 0.49
PRPF40A-204ENST00000450303 HSD3B7Q9H2F3 369 aa18.14■□□□□ 0.49
PRPF40A-204ENST00000450303 DPEP3Q9H4B8 488 aa18.14■□□□□ 0.49
PRPF40A-204ENST00000450303 ZFHX2Q9C0A1 2572 aaPredicted RBP18.14■□□□□ 0.49
PRPF40A-204ENST00000450303 GREB1Q4ZG55 1949 aa18.13■□□□□ 0.49
PRPF40A-204ENST00000450303 F5P12259 2224 aa18.13■□□□□ 0.49
PRPF40A-204ENST00000450303 LRRC10BA6NIK2 292 aa18.13■□□□□ 0.49
PRPF40A-204ENST00000450303 ARNTLO00327 626 aa18.13■□□□□ 0.49
PRPF40A-204ENST00000450303 CHADO15335 359 aa18.13■□□□□ 0.49
PRPF40A-204ENST00000450303 CBFA2T2O43439 604 aa18.13■□□□□ 0.49
PRPF40A-204ENST00000450303 C4BPAP04003 597 aaKnown RBP18.13■□□□□ 0.49
PRPF40A-204ENST00000450303 TPM3P06753 285 aa18.13■□□□□ 0.49
PRPF40A-204ENST00000450303 MSNP26038 577 aaKnown RBP18.13■□□□□ 0.49
PRPF40A-204ENST00000450303 GTF2H1P32780 548 aa18.13■□□□□ 0.49
PRPF40A-204ENST00000450303 SOX9P48436 509 aa18.13■□□□□ 0.49
PRPF40A-204ENST00000450303 CDH8P55286 799 aa18.13■□□□□ 0.49
PRPF40A-204ENST00000450303 MCCD1P59942 119 aaPredicted RBP18.13■□□□□ 0.49
PRPF40A-204ENST00000450303 FANCCQ00597 558 aa18.13■□□□□ 0.49
PRPF40A-204ENST00000450303 FCHO2Q0JRZ9 810 aa18.13■□□□□ 0.49
PRPF40A-204ENST00000450303 CETN1Q12798 172 aa18.13■□□□□ 0.49
PRPF40A-204ENST00000450303 FZD5Q13467 585 aa18.13■□□□□ 0.49
PRPF40A-204ENST00000450303 KRT31Q15323 416 aa18.13■□□□□ 0.49
PRPF40A-204ENST00000450303 CMTM8Q8IZV2 173 aa18.13■□□□□ 0.49
PRPF40A-204ENST00000450303 BPIFB1Q8TDL5 484 aa18.13■□□□□ 0.49
PRPF40A-204ENST00000450303 FUBP3Q96I24 572 aaKnown RBP eCLIP18.13■□□□□ 0.49
PRPF40A-204ENST00000450303 NELL2Q99435 816 aa18.13■□□□□ 0.49
PRPF40A-204ENST00000450303 SMYD3Q9H7B4 428 aa18.13■□□□□ 0.49
PRPF40A-204ENST00000450303 TRPV5Q9NQA5 729 aa18.13■□□□□ 0.49
PRPF40A-204ENST00000450303 TAB2Q9NYJ8 693 aa18.13■□□□□ 0.49
PRPF40A-204ENST00000450303 MRPS17Q9Y2R5 130 aaKnown RBP18.13■□□□□ 0.49
PRPF40A-204ENST00000450303 R4GN57 208 aa18.13■□□□□ 0.49
PRPF40A-204ENST00000450303 PTPRDP23468 1912 aa18.13■□□□□ 0.49
PRPF40A-204ENST00000450303 PATJQ8NI35 1801 aa18.12■□□□□ 0.49
PRPF40A-204ENST00000450303 A8MXQ7 604 aa18.12■□□□□ 0.49
PRPF40A-204ENST00000450303 PROB1E7EW31 1015 aa18.12■□□□□ 0.49
PRPF40A-204ENST00000450303 MAN2B1O00754 1011 aa18.12■□□□□ 0.49
PRPF40A-204ENST00000450303 TACC1O75410 805 aa18.12■□□□□ 0.49
PRPF40A-204ENST00000450303 NOL4O94818 638 aa18.12■□□□□ 0.49
PRPF40A-204ENST00000450303 VNN1O95497 513 aa18.12■□□□□ 0.49
PRPF40A-204ENST00000450303 AFPP02771 609 aaKnown RBP18.12■□□□□ 0.49
PRPF40A-204ENST00000450303 SP9P0CG40 484 aa18.12■□□□□ 0.49
PRPF40A-204ENST00000450303 ATP1A3P13637 1013 aa18.12■□□□□ 0.49
PRPF40A-204ENST00000450303 PTPN1P18031 435 aaKnown RBP18.12■□□□□ 0.49
PRPF40A-204ENST00000450303 ATICP31939 592 aa18.12■□□□□ 0.49
PRPF40A-204ENST00000450303 GRIK1P39086 918 aa18.12■□□□□ 0.49
PRPF40A-204ENST00000450303 RAP1GAPP47736 663 aa18.12■□□□□ 0.49
PRPF40A-204ENST00000450303 KPNA1P52294 538 aaPredicted RBP18.12■□□□□ 0.49
PRPF40A-204ENST00000450303 COPB1P53618 953 aaKnown RBP18.12■□□□□ 0.49
PRPF40A-204ENST00000450303 KCNH2Q12809 1159 aa18.12■□□□□ 0.49
PRPF40A-204ENST00000450303 NCOA4Q13772 614 aa18.12■□□□□ 0.49
PRPF40A-204ENST00000450303 ZNF699Q32M78 642 aa18.12■□□□□ 0.49
PRPF40A-204ENST00000450303 VWA3BQ502W6 1294 aa18.12■□□□□ 0.49
PRPF40A-204ENST00000450303 FKBP15Q5T1M5 1219 aa18.12■□□□□ 0.49
PRPF40A-204ENST00000450303 SCARA5Q6ZMJ2 495 aa18.12■□□□□ 0.49
PRPF40A-204ENST00000450303 MAML2Q8IZL2 1156 aaPredicted RBP18.12■□□□□ 0.49
PRPF40A-204ENST00000450303 MYCBPAPQ8TBZ2 947 aa18.12■□□□□ 0.49
PRPF40A-204ENST00000450303 MRPS31Q92665 395 aaKnown RBP18.12■□□□□ 0.49
PRPF40A-204ENST00000450303 CLDN23Q96B33 292 aa18.12■□□□□ 0.49
PRPF40A-204ENST00000450303 PCED1BQ96HM7 432 aa18.12■□□□□ 0.49
PRPF40A-204ENST00000450303 VPS16Q9H269 839 aa18.12■□□□□ 0.49
PRPF40A-204ENST00000450303 GTSE1Q9NYZ3 720 aa18.12■□□□□ 0.49
PRPF40A-204ENST00000450303 CCL26Q9Y258 94 aa18.12■□□□□ 0.49
PRPF40A-204ENST00000450303 ANAPC1Q9H1A4 1944 aa18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms