RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 TNNC1P63316 161 aa14.18□□□□□ -0.14
HMGB3-204ENST00000448905 NOP14P78316 857 aaKnown RBP14.18□□□□□ -0.14
HMGB3-204ENST00000448905 SLC7A9P82251 487 aa14.18□□□□□ -0.14
HMGB3-204ENST00000448905 MRPS21P82921 87 aaKnown RBP14.18□□□□□ -0.14
HMGB3-204ENST00000448905 RESTQ13127 1097 aa14.18□□□□□ -0.14
HMGB3-204ENST00000448905 TRPC3Q13507 836 aa14.18□□□□□ -0.14
HMGB3-204ENST00000448905 BYSLQ13895 437 aaKnown RBP14.18□□□□□ -0.14
HMGB3-204ENST00000448905 STK38Q15208 465 aa14.18□□□□□ -0.14
HMGB3-204ENST00000448905 WDR72Q3MJ13 1102 aa14.18□□□□□ -0.14
HMGB3-204ENST00000448905 PREPLQ4J6C6 727 aaPredicted RBP14.18□□□□□ -0.14
HMGB3-204ENST00000448905 LMBRD2Q68DH5 695 aaPredicted RBP14.18□□□□□ -0.14
HMGB3-204ENST00000448905 FAM173BQ6P4H8 233 aa14.18□□□□□ -0.14
HMGB3-204ENST00000448905 NUDT18Q6ZVK8 323 aa14.18□□□□□ -0.14
HMGB3-204ENST00000448905 CBWD2Q8IUF1 395 aa14.18□□□□□ -0.14
HMGB3-204ENST00000448905 IQUBQ8NA54 791 aa14.18□□□□□ -0.14
HMGB3-204ENST00000448905 OR5B17Q8NGF7 314 aa14.18□□□□□ -0.14
HMGB3-204ENST00000448905 RIN3Q8TB24 985 aa14.18□□□□□ -0.14
HMGB3-204ENST00000448905 KBTBD7Q8WVZ9 684 aa14.18□□□□□ -0.14
HMGB3-204ENST00000448905 MYLPFQ96A32 169 aa14.18□□□□□ -0.14
HMGB3-204ENST00000448905 INTS4Q96HW7 963 aaKnown RBP14.18□□□□□ -0.14
HMGB3-204ENST00000448905 TBC1D14Q9P2M4 693 aa14.18□□□□□ -0.14
HMGB3-204ENST00000448905 F5P12259 2224 aa14.18□□□□□ -0.14
HMGB3-204ENST00000448905 KIF26AQ9ULI4 1882 aaPredicted RBP14.17□□□□□ -0.14
HMGB3-204ENST00000448905 DCLK1O15075 740 aa14.17□□□□□ -0.14
HMGB3-204ENST00000448905 EIF3DO15371 548 aaKnown RBP eCLIP14.17□□□□□ -0.14
HMGB3-204ENST00000448905 PHACTR2O75167 634 aa14.17□□□□□ -0.14
HMGB3-204ENST00000448905 TACC1O75410 805 aa14.17□□□□□ -0.14
HMGB3-204ENST00000448905 KCNK5O95279 499 aa14.17□□□□□ -0.14
HMGB3-204ENST00000448905 CST3P01034 146 aaPredicted RBP14.17□□□□□ -0.14
HMGB3-204ENST00000448905 PTPN1P18031 435 aaKnown RBP14.17□□□□□ -0.14
HMGB3-204ENST00000448905 SNRNP35Q16560 246 aaKnown RBP14.17□□□□□ -0.14
HMGB3-204ENST00000448905 HSF5Q4G112 596 aaPredicted RBP14.17□□□□□ -0.14
HMGB3-204ENST00000448905 MDH1BQ5I0G3 518 aa14.17□□□□□ -0.14
HMGB3-204ENST00000448905 TTC30AQ86WT1 665 aa14.17□□□□□ -0.14
HMGB3-204ENST00000448905 PDZD8Q8NEN9 1154 aa14.17□□□□□ -0.14
HMGB3-204ENST00000448905 ZNF507Q8TCN5 953 aa14.17□□□□□ -0.14
HMGB3-204ENST00000448905 USP33Q8TEY7 942 aa14.17□□□□□ -0.14
HMGB3-204ENST00000448905 PCED1BQ96HM7 432 aa14.17□□□□□ -0.14
HMGB3-204ENST00000448905 ZNF396Q96N95 335 aaPredicted RBP14.17□□□□□ -0.14
HMGB3-204ENST00000448905 PNKPQ96T60 521 aa14.17□□□□□ -0.14
HMGB3-204ENST00000448905 TTLL2Q9BWV7 592 aa14.17□□□□□ -0.14
HMGB3-204ENST00000448905 ELOVL4Q9GZR5 314 aa14.17□□□□□ -0.14
HMGB3-204ENST00000448905 POLMQ9NP87 494 aaPredicted RBP14.17□□□□□ -0.14
HMGB3-204ENST00000448905 CRTAC1Q9NQ79 661 aa14.17□□□□□ -0.14
HMGB3-204ENST00000448905 RXFP3Q9NSD7 469 aa14.17□□□□□ -0.14
HMGB3-204ENST00000448905 POLR3BQ9NW08 1133 aaPredicted RBP14.17□□□□□ -0.14
HMGB3-204ENST00000448905 SPTBN2O15020 2390 aa14.16□□□□□ -0.14
HMGB3-204ENST00000448905 A8MXQ7 604 aa14.16□□□□□ -0.14
HMGB3-204ENST00000448905 PALM2-AKAP2B1ALY0 433 aaPredicted RBP14.16□□□□□ -0.14
HMGB3-204ENST00000448905 F8VP50 259 aa14.16□□□□□ -0.14
HMGB3-204ENST00000448905 K7EQS6 105 aa14.16□□□□□ -0.14
HMGB3-204ENST00000448905 ZBTB24O43167 697 aaPredicted RBP14.16□□□□□ -0.14
HMGB3-204ENST00000448905 HCRTO43612 131 aa14.16□□□□□ -0.14
HMGB3-204ENST00000448905 RTN3O95197 1032 aaPredicted RBP14.16□□□□□ -0.14
HMGB3-204ENST00000448905 ADH1CP00326 375 aa14.16□□□□□ -0.14
HMGB3-204ENST00000448905 ATICP31939 592 aa14.16□□□□□ -0.14
HMGB3-204ENST00000448905 EIF2DP41214 584 aaKnown RBP14.16□□□□□ -0.14
HMGB3-204ENST00000448905 SEC13P55735 322 aa14.16□□□□□ -0.14
HMGB3-204ENST00000448905 ASIC1P78348 528 aa14.16□□□□□ -0.14
HMGB3-204ENST00000448905 SHC2P98077 582 aa14.16□□□□□ -0.14
HMGB3-204ENST00000448905 TAF10Q12962 218 aa14.16□□□□□ -0.14
HMGB3-204ENST00000448905 CRY1Q16526 586 aa14.16□□□□□ -0.14
HMGB3-204ENST00000448905 BTBD8Q5XKL5 378 aa14.16□□□□□ -0.14
HMGB3-204ENST00000448905 NAIF1Q69YI7 327 aaPredicted RBP14.16□□□□□ -0.14
HMGB3-204ENST00000448905 SCARA3Q6AZY7 606 aa14.16□□□□□ -0.14
HMGB3-204ENST00000448905 ANO7Q6IWH7 933 aa14.16□□□□□ -0.14
HMGB3-204ENST00000448905 FILIP1Q7Z7B0 1213 aa14.16□□□□□ -0.14
HMGB3-204ENST00000448905 NUP93Q8N1F7 819 aa14.16□□□□□ -0.14
HMGB3-204ENST00000448905 XXYLT1Q8NBI6 393 aa14.16□□□□□ -0.14
HMGB3-204ENST00000448905 CCDC127Q96BQ5 260 aa14.16□□□□□ -0.14
HMGB3-204ENST00000448905 USP28Q96RU2 1077 aa14.16□□□□□ -0.14
HMGB3-204ENST00000448905 EDEM2Q9BV94 578 aa14.16□□□□□ -0.14
HMGB3-204ENST00000448905 FGFBP2Q9BYJ0 223 aa14.16□□□□□ -0.14
HMGB3-204ENST00000448905 RNF38Q9H0F5 515 aa14.16□□□□□ -0.14
HMGB3-204ENST00000448905 SMOC1Q9H4F8 434 aa14.16□□□□□ -0.14
HMGB3-204ENST00000448905 KBTBD4Q9NVX7 518 aa14.16□□□□□ -0.14
HMGB3-204ENST00000448905 CGNQ9P2M7 1197 aaKnown RBP14.16□□□□□ -0.14
HMGB3-204ENST00000448905 MMP17Q9ULZ9 603 aa14.16□□□□□ -0.14
HMGB3-204ENST00000448905 INVSQ9Y283 1065 aa14.16□□□□□ -0.14
HMGB3-204ENST00000448905 CPQQ9Y646 472 aa14.16□□□□□ -0.14
HMGB3-204ENST00000448905 ATP8B3O60423 1300 aa14.15□□□□□ -0.14
HMGB3-204ENST00000448905 A0A087X0B3 334 aa14.15□□□□□ -0.14
HMGB3-204ENST00000448905 C4orf47A7E2U8 309 aa14.15□□□□□ -0.14
HMGB3-204ENST00000448905 SPTLC2O15270 562 aa14.15□□□□□ -0.14
HMGB3-204ENST00000448905 PPP6R2O75170 966 aa14.15□□□□□ -0.14
HMGB3-204ENST00000448905 APODP05090 189 aa14.15□□□□□ -0.14
HMGB3-204ENST00000448905 PDIA4P13667 645 aaKnown RBP14.15□□□□□ -0.14
HMGB3-204ENST00000448905 YWHAQP27348 245 aa14.15□□□□□ -0.14
HMGB3-204ENST00000448905 PMLP29590 882 aa14.15□□□□□ -0.14
HMGB3-204ENST00000448905 GRIA2P42262 883 aa14.15□□□□□ -0.14
HMGB3-204ENST00000448905 TNFRSF4P43489 277 aa14.15□□□□□ -0.14
HMGB3-204ENST00000448905 NASPP49321 788 aaPredicted RBP14.15□□□□□ -0.14
HMGB3-204ENST00000448905 PSMD6Q15008 389 aa14.15□□□□□ -0.14
HMGB3-204ENST00000448905 DHCR24Q15392 516 aa14.15□□□□□ -0.14
HMGB3-204ENST00000448905 EOGTQ5NDL2 527 aa14.15□□□□□ -0.14
HMGB3-204ENST00000448905 LPCAT2Q7L5N7 544 aa14.15□□□□□ -0.14
HMGB3-204ENST00000448905 CCDC33Q8N5R6 958 aa14.15□□□□□ -0.14
HMGB3-204ENST00000448905 LINC00301Q8NCQ3 95 aa14.15□□□□□ -0.14
HMGB3-204ENST00000448905 EZH1Q92800 747 aaPredicted RBP14.15□□□□□ -0.14
HMGB3-204ENST00000448905 SYAP1Q96A49 352 aaPredicted RBP14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms