RNA–Protein interactions for RNA: ENST00000446312.5

DDR1-238, Transcript of discoidin domain receptor tyrosine kinase 1, human

TSL 5 BASIC

Gene DDR1, Length 3,202 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDR1-238	ENST00000446312	CLEC4D	Q8WXI8	215 aa		13.12	□□□□□ -0.31
DDR1-238	ENST00000446312	GJD4	Q96KN9	370 aa	Predicted RBP	13.12	□□□□□ -0.31
DDR1-238	ENST00000446312	SENP7	Q9BQF6	1050 aa		13.12	□□□□□ -0.31
DDR1-238	ENST00000446312	PCMTD2	Q9NV79	361 aa		13.12	□□□□□ -0.31
DDR1-238	ENST00000446312	ZNF536	O15090	1300 aa		13.12	□□□□□ -0.31
DDR1-238	ENST00000446312	LY75	O60449	1722 aa		13.11	□□□□□ -0.31
DDR1-238	ENST00000446312	KBTBD13	C9JR72	458 aa		13.11	□□□□□ -0.31
DDR1-238	ENST00000446312	LYPLA1	O75608	230 aa	Predicted RBP	13.11	□□□□□ -0.31
DDR1-238	ENST00000446312	TJP3	O95049	919 aa		13.11	□□□□□ -0.31
DDR1-238	ENST00000446312	APBA3	O96018	575 aa		13.11	□□□□□ -0.31
DDR1-238	ENST00000446312	RPL22	P35268	128 aa	Known RBP	13.11	□□□□□ -0.31
DDR1-238	ENST00000446312	PGM1	P36871	562 aa		13.11	□□□□□ -0.31
DDR1-238	ENST00000446312	IGBP1	P78318	339 aa		13.11	□□□□□ -0.31
DDR1-238	ENST00000446312	CFAP157	Q5JU67	520 aa		13.11	□□□□□ -0.31
DDR1-238	ENST00000446312	DENND1B	Q6P3S1	775 aa		13.11	□□□□□ -0.31
DDR1-238	ENST00000446312	ABRA	Q8N0Z2	381 aa		13.11	□□□□□ -0.31
DDR1-238	ENST00000446312	RANBP17	Q9H2T7	1088 aa	Known RBP	13.11	□□□□□ -0.31
DDR1-238	ENST00000446312	PREB	Q9HCU5	417 aa		13.11	□□□□□ -0.31
DDR1-238	ENST00000446312	RNF146	Q9NTX7	359 aa		13.11	□□□□□ -0.31
DDR1-238	ENST00000446312	PSMC3IP	Q9P2W1	217 aa	Predicted RBP	13.11	□□□□□ -0.31
DDR1-238	ENST00000446312	SLC9A2	Q9UBY0	812 aa		13.11	□□□□□ -0.31
DDR1-238	ENST00000446312	TRIM49D1	C9J1S8	452 aa		13.11	□□□□□ -0.31
DDR1-238	ENST00000446312	INHBA	P08476	426 aa		13.11	□□□□□ -0.31
DDR1-238	ENST00000446312	C15orf59	Q2T9L4	293 aa	Predicted RBP	13.11	□□□□□ -0.31
DDR1-238	ENST00000446312	CES3	Q6UWW8	571 aa		13.11	□□□□□ -0.31
DDR1-238	ENST00000446312	C17orf50	Q8WW18	174 aa		13.11	□□□□□ -0.31
DDR1-238	ENST00000446312	PDCD2L	Q9BRP1	358 aa		13.11	□□□□□ -0.31
DDR1-238	ENST00000446312	WDR83	Q9BRX9	315 aa	Known RBP	13.11	□□□□□ -0.31
DDR1-238	ENST00000446312	APOL6	Q9BWW8	343 aa		13.11	□□□□□ -0.31
DDR1-238	ENST00000446312	NR3C2	P08235	984 aa		13.11	□□□□□ -0.31
DDR1-238	ENST00000446312	SERPINB4	P48594	390 aa		13.11	□□□□□ -0.31
DDR1-238	ENST00000446312	GTF2A2	P52657	109 aa		13.11	□□□□□ -0.31
DDR1-238	ENST00000446312	PSMC1	P62191	440 aa	Known RBP	13.11	□□□□□ -0.31
DDR1-238	ENST00000446312	SFSWAP	Q12872	951 aa	Known RBP	13.11	□□□□□ -0.31
DDR1-238	ENST00000446312	MOGS	Q13724	837 aa		13.11	□□□□□ -0.31
DDR1-238	ENST00000446312	MYBPC3	Q14896	1274 aa		13.11	□□□□□ -0.31
DDR1-238	ENST00000446312	PDK4	Q16654	411 aa		13.11	□□□□□ -0.31
DDR1-238	ENST00000446312	TSNAXIP1	Q2TAA8	658 aa		13.11	□□□□□ -0.31
DDR1-238	ENST00000446312	SNRNP48	Q6IEG0	339 aa	Known RBP	13.11	□□□□□ -0.31
DDR1-238	ENST00000446312	MAP4K3	Q8IVH8	894 aa		13.11	□□□□□ -0.31
DDR1-238	ENST00000446312	KIAA0319L	Q8IZA0	1049 aa		13.11	□□□□□ -0.31
DDR1-238	ENST00000446312	C12orf50	Q8NA57	414 aa	Predicted RBP	13.11	□□□□□ -0.31
DDR1-238	ENST00000446312	PYDC1	Q8WXC3	89 aa		13.11	□□□□□ -0.31
DDR1-238	ENST00000446312	CPT1B	Q92523	772 aa		13.11	□□□□□ -0.31
DDR1-238	ENST00000446312	TRIM55	Q9BYV6	548 aa		13.11	□□□□□ -0.31
DDR1-238	ENST00000446312	UNK	Q9C0B0	810 aa	Known RBP	13.11	□□□□□ -0.31
DDR1-238	ENST00000446312	PCDHA10	Q9Y5I2	948 aa		13.11	□□□□□ -0.31
DDR1-238	ENST00000446312	BRCA2	P51587	3418 aa		13.1	□□□□□ -0.31
DDR1-238	ENST00000446312	CXorf49	A8MYA2	514 aa	Predicted RBP	13.1	□□□□□ -0.31
DDR1-238	ENST00000446312	FCHO1	O14526	889 aa		13.1	□□□□□ -0.31
DDR1-238	ENST00000446312	DCTN3	O75935	186 aa		13.1	□□□□□ -0.31
DDR1-238	ENST00000446312	APRT	P07741	180 aa		13.1	□□□□□ -0.31
DDR1-238	ENST00000446312	MAPT	P10636	758 aa	Known RBP	13.1	□□□□□ -0.31
DDR1-238	ENST00000446312	RBP3	P10745	1247 aa		13.1	□□□□□ -0.31
DDR1-238	ENST00000446312	KCNA3	P22001	575 aa		13.1	□□□□□ -0.31
DDR1-238	ENST00000446312	HOXA7	P31268	230 aa	Predicted RBP	13.1	□□□□□ -0.31
DDR1-238	ENST00000446312	TRPC3	Q13507	836 aa		13.1	□□□□□ -0.31
DDR1-238	ENST00000446312	CCDC62	Q6P9F0	684 aa		13.1	□□□□□ -0.31
DDR1-238	ENST00000446312	IMPG2	Q9BZV3	1241 aa		13.1	□□□□□ -0.31
DDR1-238	ENST00000446312	RPAP3	Q9H6T3	665 aa	Predicted RBP	13.1	□□□□□ -0.31
DDR1-238	ENST00000446312	RAB6B	Q9NRW1	208 aa		13.1	□□□□□ -0.31
DDR1-238	ENST00000446312	STAM2	O75886	525 aa		13.1	□□□□□ -0.31
DDR1-238	ENST00000446312	SAT1	P21673	171 aa		13.1	□□□□□ -0.31
DDR1-238	ENST00000446312	RFX1	P22670	979 aa		13.1	□□□□□ -0.31
DDR1-238	ENST00000446312	GEMIN4	P57678	1058 aa	Known RBP	13.1	□□□□□ -0.31
DDR1-238	ENST00000446312	EIF3E	P60228	445 aa	Known RBP	13.1	□□□□□ -0.31
DDR1-238	ENST00000446312	DYNC1I2	Q13409	638 aa	Known RBP	13.1	□□□□□ -0.31
DDR1-238	ENST00000446312	CLUL1	Q15846	466 aa		13.1	□□□□□ -0.31
DDR1-238	ENST00000446312	KBTBD2	Q8IY47	623 aa		13.1	□□□□□ -0.31
DDR1-238	ENST00000446312	SPATA18	Q8TC71	538 aa		13.1	□□□□□ -0.31
DDR1-238	ENST00000446312	NLRP4	Q96MN2	994 aa		13.1	□□□□□ -0.31
DDR1-238	ENST00000446312	LRMDA	Q9H2I8	198 aa		13.1	□□□□□ -0.31
DDR1-238	ENST00000446312	THSD7A	Q9UPZ6	1657 aa		13.1	□□□□□ -0.31
DDR1-238	ENST00000446312	SPDYE2B	A6NHP3	402 aa		13.09	□□□□□ -0.31
DDR1-238	ENST00000446312	SPDYE6	P0CI01	402 aa		13.09	□□□□□ -0.31
DDR1-238	ENST00000446312	GRIA1	P42261	906 aa		13.09	□□□□□ -0.31
DDR1-238	ENST00000446312	HADHB	P55084	474 aa	Known RBP	13.09	□□□□□ -0.31
DDR1-238	ENST00000446312	SLC25A3	Q00325	362 aa		13.09	□□□□□ -0.31
DDR1-238	ENST00000446312	CNTN2	Q02246	1040 aa		13.09	□□□□□ -0.31
DDR1-238	ENST00000446312	SPDYC	Q5MJ68	293 aa		13.09	□□□□□ -0.31
DDR1-238	ENST00000446312	DENND1A	Q8TEH3	1009 aa		13.09	□□□□□ -0.31
DDR1-238	ENST00000446312	FAF2	Q96CS3	445 aa		13.09	□□□□□ -0.31
DDR1-238	ENST00000446312	LPIN3	Q9BQK8	851 aa		13.09	□□□□□ -0.31
DDR1-238	ENST00000446312	EBF4	Q9BQW3	602 aa		13.09	□□□□□ -0.31
DDR1-238	ENST00000446312	MRPL47	Q9HD33	250 aa	Known RBP	13.09	□□□□□ -0.31
DDR1-238	ENST00000446312	NGRN	Q9NPE2	291 aa	Known RBP	13.09	□□□□□ -0.31
DDR1-238	ENST00000446312	PARVA	Q9NVD7	372 aa		13.09	□□□□□ -0.31
DDR1-238	ENST00000446312	TAS2R1	Q9NYW7	299 aa		13.09	□□□□□ -0.31
DDR1-238	ENST00000446312	HMGXB4	Q9UGU5	601 aa		13.09	□□□□□ -0.31
DDR1-238	ENST00000446312	RABGEF1	Q9UJ41	708 aa		13.09	□□□□□ -0.31
DDR1-238	ENST00000446312	STK24	Q9Y6E0	443 aa		13.09	□□□□□ -0.31
DDR1-238	ENST00000446312	CCNB1	P14635	433 aa		13.09	□□□□□ -0.31
DDR1-238	ENST00000446312	NAT1	P18440	290 aa		13.09	□□□□□ -0.31
DDR1-238	ENST00000446312	HMGCS2	P54868	508 aa		13.09	□□□□□ -0.31
DDR1-238	ENST00000446312	KLC1	Q07866	573 aa		13.09	□□□□□ -0.31
DDR1-238	ENST00000446312	CHI3L2	Q15782	390 aa		13.09	□□□□□ -0.31
DDR1-238	ENST00000446312	ZNF568	Q3ZCX4	644 aa		13.09	□□□□□ -0.31
DDR1-238	ENST00000446312	TREML1	Q86YW5	311 aa		13.09	□□□□□ -0.31
DDR1-238	ENST00000446312	TMEM192	Q8IY95	271 aa		13.09	□□□□□ -0.31
DDR1-238	ENST00000446312	AGGF1	Q8N302	714 aa	eCLIP	13.09	□□□□□ -0.31	5e-7	■■■■■ 43.7

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