RNA–Protein interactions for RNA: ENST00000444440.1

SF3A1-203, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 777 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-203ENST00000444440 PRMT8Q9NR22 394 aaPredicted RBP11.59□□□□□ -0.55
SF3A1-203ENST00000444440 GKN1Q9NS71 199 aa11.59□□□□□ -0.55
SF3A1-203ENST00000444440 TDP1Q9NUW8 608 aa11.59□□□□□ -0.55
SF3A1-203ENST00000444440 LAMA1P25391 3075 aa11.58□□□□□ -0.55
SF3A1-203ENST00000444440 MAN2B1O00754 1011 aa11.58□□□□□ -0.56
SF3A1-203ENST00000444440 CALUO43852 315 aaPredicted RBP11.58□□□□□ -0.56
SF3A1-203ENST00000444440 BEST1O76090 585 aa11.58□□□□□ -0.56
SF3A1-203ENST00000444440 ASS1P00966 412 aaKnown RBP11.58□□□□□ -0.56
SF3A1-203ENST00000444440 FAM163BP0C2L3 166 aa11.58□□□□□ -0.56
SF3A1-203ENST00000444440 CCDC130P13994 396 aa11.58□□□□□ -0.56
SF3A1-203ENST00000444440 DDX6P26196 483 aaKnown RBP eCLIP11.58□□□□□ -0.56
SF3A1-203ENST00000444440 AVPR1AP37288 418 aa11.58□□□□□ -0.56
SF3A1-203ENST00000444440 PRCPP42785 496 aa11.58□□□□□ -0.56
SF3A1-203ENST00000444440 GCLMP48507 274 aa11.58□□□□□ -0.56
SF3A1-203ENST00000444440 PGFP49763 221 aa11.58□□□□□ -0.56
SF3A1-203ENST00000444440 VAMP7P51809 220 aa11.58□□□□□ -0.56
SF3A1-203ENST00000444440 KPNA1P52294 538 aaPredicted RBP11.58□□□□□ -0.56
SF3A1-203ENST00000444440 AP3M2P53677 418 aa11.58□□□□□ -0.56
SF3A1-203ENST00000444440 CSTF1Q05048 431 aaKnown RBP11.58□□□□□ -0.56
SF3A1-203ENST00000444440 PKN3Q6P5Z2 889 aa11.58□□□□□ -0.56
SF3A1-203ENST00000444440 DENND5BQ6ZUT9 1274 aa11.58□□□□□ -0.56
SF3A1-203ENST00000444440 ACOT1Q86TX2 421 aa11.58□□□□□ -0.56
SF3A1-203ENST00000444440 FAM186BQ8IYM0 893 aa11.58□□□□□ -0.56
SF3A1-203ENST00000444440 ZMIZ2Q8NF64 920 aa11.58□□□□□ -0.56
SF3A1-203ENST00000444440 TAS1R2Q8TE23 839 aa11.58□□□□□ -0.56
SF3A1-203ENST00000444440 NELL1Q92832 810 aa11.58□□□□□ -0.56
SF3A1-203ENST00000444440 KCNK16Q96T55 309 aa11.58□□□□□ -0.56
SF3A1-203ENST00000444440 NELL2Q99435 816 aa11.58□□□□□ -0.56
SF3A1-203ENST00000444440 TTLL2Q9BWV7 592 aa11.58□□□□□ -0.56
SF3A1-203ENST00000444440 MMRN2Q9H8L6 949 aa11.58□□□□□ -0.56
SF3A1-203ENST00000444440 UXTQ9UBK9 157 aaPredicted RBP11.58□□□□□ -0.56
SF3A1-203ENST00000444440 SPTBN4Q9H254 2564 aa11.58□□□□□ -0.56
SF3A1-203ENST00000444440 NUP205Q92621 2012 aa11.57□□□□□ -0.56
SF3A1-203ENST00000444440 GVINP1Q7Z2Y8 2422 aa11.57□□□□□ -0.56
SF3A1-203ENST00000444440 PTPRZ1P23471 2315 aaPredicted RBP11.57□□□□□ -0.56
SF3A1-203ENST00000444440 TRIM49BA6NDI0 452 aa11.57□□□□□ -0.56
SF3A1-203ENST00000444440 TNFRSF10BO14763 440 aa11.57□□□□□ -0.56
SF3A1-203ENST00000444440 TRIM66O15016 1216 aa11.57□□□□□ -0.56
SF3A1-203ENST00000444440 MAPK13O15264 365 aa11.57□□□□□ -0.56
SF3A1-203ENST00000444440 LAMTOR5O43504 91 aa11.57□□□□□ -0.56
SF3A1-203ENST00000444440 GADD45BO75293 160 aaPredicted RBP11.57□□□□□ -0.56
SF3A1-203ENST00000444440 ANP32AP39687 249 aaKnown RBP11.57□□□□□ -0.56
SF3A1-203ENST00000444440 PIK3CAP42336 1068 aa11.57□□□□□ -0.56
SF3A1-203ENST00000444440 MAGEA9P43362 315 aa11.57□□□□□ -0.56
SF3A1-203ENST00000444440 NDST1P52848 882 aa11.57□□□□□ -0.56
SF3A1-203ENST00000444440 MLLT6P55198 1093 aaPredicted RBP11.57□□□□□ -0.56
SF3A1-203ENST00000444440 MCCD1P59942 119 aaPredicted RBP11.57□□□□□ -0.56
SF3A1-203ENST00000444440 NOP14P78316 857 aaKnown RBP11.57□□□□□ -0.56
SF3A1-203ENST00000444440 SATB1Q01826 763 aa11.57□□□□□ -0.56
SF3A1-203ENST00000444440 FAM160A1Q05DH4 1040 aa11.57□□□□□ -0.56
SF3A1-203ENST00000444440 DMWDQ09019 674 aa11.57□□□□□ -0.56
SF3A1-203ENST00000444440 IFRD2Q12894 506 aaPredicted RBP11.57□□□□□ -0.56
SF3A1-203ENST00000444440 ADAM9Q13443 819 aa11.57□□□□□ -0.56
SF3A1-203ENST00000444440 RUNX3Q13761 415 aa11.57□□□□□ -0.56
SF3A1-203ENST00000444440 ZNF268Q14587 947 aaPredicted RBP11.57□□□□□ -0.56
SF3A1-203ENST00000444440 MAPRE1Q15691 268 aaKnown RBP11.57□□□□□ -0.56
SF3A1-203ENST00000444440 FAM35AQ86V20 835 aa11.57□□□□□ -0.56
SF3A1-203ENST00000444440 FUKQ8N0W3 1084 aa11.57□□□□□ -0.56
SF3A1-203ENST00000444440 C12orf29Q8N999 325 aa11.57□□□□□ -0.56
SF3A1-203ENST00000444440 TTC16Q8NEE8 873 aa11.57□□□□□ -0.56
SF3A1-203ENST00000444440 SCAMP5Q8TAC9 235 aa11.57□□□□□ -0.56
SF3A1-203ENST00000444440 SPATA20Q8TB22 786 aa11.57□□□□□ -0.56
SF3A1-203ENST00000444440 SEMA4DQ92854 862 aa11.57□□□□□ -0.56
SF3A1-203ENST00000444440 CCDC47Q96A33 483 aaKnown RBP11.57□□□□□ -0.56
SF3A1-203ENST00000444440 C8orf48Q96LL4 319 aa11.57□□□□□ -0.56
SF3A1-203ENST00000444440 ELOVL4Q9GZR5 314 aa11.57□□□□□ -0.56
SF3A1-203ENST00000444440 RNF38Q9H0F5 515 aa11.57□□□□□ -0.56
SF3A1-203ENST00000444440 C8orf33Q9H7E9 229 aaPredicted RBP11.57□□□□□ -0.56
SF3A1-203ENST00000444440 FBRSL1Q9HCM7 1045 aaKnown RBP11.57□□□□□ -0.56
SF3A1-203ENST00000444440 POLR3BQ9NW08 1133 aaPredicted RBP11.57□□□□□ -0.56
SF3A1-203ENST00000444440 FBXO4Q9UKT5 387 aa11.57□□□□□ -0.56
SF3A1-203ENST00000444440 FRMD4BQ9Y2L6 1034 aa11.57□□□□□ -0.56
SF3A1-203ENST00000444440 MRPS17Q9Y2R5 130 aaKnown RBP11.57□□□□□ -0.56
SF3A1-203ENST00000444440 PCDHA5Q9Y5H7 936 aa11.57□□□□□ -0.56
SF3A1-203ENST00000444440 WNT6Q9Y6F9 365 aa11.57□□□□□ -0.56
SF3A1-203ENST00000444440 EP300Q09472 2414 aaPredicted RBP11.56□□□□□ -0.56
SF3A1-203ENST00000444440 TRAV19A0A0A6YYK7 116 aa11.56□□□□□ -0.56
SF3A1-203ENST00000444440 ZNF840PA6NDX5 716 aa11.56□□□□□ -0.56
SF3A1-203ENST00000444440 ANTXRLA6NF34 631 aa11.56□□□□□ -0.56
SF3A1-203ENST00000444440 SCAMP3O14828 347 aaKnown RBP11.56□□□□□ -0.56
SF3A1-203ENST00000444440 IKBKBO14920 756 aa11.56□□□□□ -0.56
SF3A1-203ENST00000444440 NCAM2O15394 837 aa11.56□□□□□ -0.56
SF3A1-203ENST00000444440 CLSTN1O94985 981 aa11.56□□□□□ -0.56
SF3A1-203ENST00000444440 CKMP06732 381 aa11.56□□□□□ -0.56
SF3A1-203ENST00000444440 CD44P16070 742 aaKnown RBP11.56□□□□□ -0.56
SF3A1-203ENST00000444440 ANXA13P27216 316 aa11.56□□□□□ -0.56
SF3A1-203ENST00000444440 PLCB2Q00722 1185 aa11.56□□□□□ -0.56
SF3A1-203ENST00000444440 TAF10Q12962 218 aa11.56□□□□□ -0.56
SF3A1-203ENST00000444440 CCINQ13939 588 aa11.56□□□□□ -0.56
SF3A1-203ENST00000444440 MTF1Q14872 753 aa11.56□□□□□ -0.56
SF3A1-203ENST00000444440 SGSM1Q2NKQ1 1148 aa11.56□□□□□ -0.56
SF3A1-203ENST00000444440 ITPRIPL2Q3MIP1 535 aa11.56□□□□□ -0.56
SF3A1-203ENST00000444440 ZNF528Q3MIS6 628 aa11.56□□□□□ -0.56
SF3A1-203ENST00000444440 ISM2Q6H9L7 571 aa11.56□□□□□ -0.56
SF3A1-203ENST00000444440 FSTL4Q6MZW2 842 aa11.56□□□□□ -0.56
SF3A1-203ENST00000444440 RALGPS2Q86X27 583 aaPredicted RBP11.56□□□□□ -0.56
SF3A1-203ENST00000444440 ZC3H3Q8IXZ2 948 aaKnown RBP11.56□□□□□ -0.56
SF3A1-203ENST00000444440 ADSSL1Q8N142 457 aa11.56□□□□□ -0.56
SF3A1-203ENST00000444440 SUMF1Q8NBK3 374 aa11.56□□□□□ -0.56
SF3A1-203ENST00000444440 ZBTB44Q8NCP5 570 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms