RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 SLC1A1P43005 524 aa8.97□□□□□ -0.97
HPS4-206ENST00000439453 RPS6P62753 249 aaKnown RBP8.97□□□□□ -0.97
HPS4-206ENST00000439453 MYBPC2Q14324 1141 aa8.97□□□□□ -0.97
HPS4-206ENST00000439453 C1orf220Q5T0J3 134 aa8.97□□□□□ -0.97
HPS4-206ENST00000439453 CCDC62Q6P9F0 684 aa8.97□□□□□ -0.97
HPS4-206ENST00000439453 SKA1Q96BD8 255 aa8.97□□□□□ -0.97
HPS4-206ENST00000439453 TUFT1Q9NNX1 390 aa8.97□□□□□ -0.97
HPS4-206ENST00000439453 SSU72Q9NP77 194 aaKnown RBP8.97□□□□□ -0.97
HPS4-206ENST00000439453 FBXO6Q9NRD1 293 aaPredicted RBP8.97□□□□□ -0.97
HPS4-206ENST00000439453 PSMC3IPQ9P2W1 217 aaPredicted RBP8.97□□□□□ -0.97
HPS4-206ENST00000439453 ATXN10Q9UBB4 475 aa8.97□□□□□ -0.97
HPS4-206ENST00000439453 SLC24A2Q9UI40 661 aa8.97□□□□□ -0.97
HPS4-206ENST00000439453 PRKAR2AP13861 404 aaKnown RBP8.97□□□□□ -0.97
HPS4-206ENST00000439453 CDK16Q00536 496 aa8.97□□□□□ -0.97
HPS4-206ENST00000439453 BAATQ14032 418 aaPredicted RBP8.97□□□□□ -0.97
HPS4-206ENST00000439453 KRT72Q14CN4 511 aa8.97□□□□□ -0.97
HPS4-206ENST00000439453 PABPC1LQ4VXU2 614 aaKnown RBP8.97□□□□□ -0.97
HPS4-206ENST00000439453 LIN52Q52LA3 116 aa8.97□□□□□ -0.97
HPS4-206ENST00000439453 PRAMEF19Q5SWL8 479 aa8.97□□□□□ -0.97
HPS4-206ENST00000439453 IZUMO2Q6UXV1 221 aa8.97□□□□□ -0.97
HPS4-206ENST00000439453 RFX8Q6ZV50 586 aa8.97□□□□□ -0.97
HPS4-206ENST00000439453 FBXO11Q86XK2 927 aa8.97□□□□□ -0.97
HPS4-206ENST00000439453 ARHGAP24Q8N264 748 aa8.97□□□□□ -0.97
HPS4-206ENST00000439453 ZNF276Q8N554 614 aa8.97□□□□□ -0.97
HPS4-206ENST00000439453 SHC3Q92529 594 aa8.97□□□□□ -0.97
HPS4-206ENST00000439453 CENPKQ9BS16 269 aa8.97□□□□□ -0.97
HPS4-206ENST00000439453 OSBPL8Q9BZF1 889 aa8.97□□□□□ -0.97
HPS4-206ENST00000439453 MANSC1Q9H8J5 431 aa8.97□□□□□ -0.97
HPS4-206ENST00000439453 CHCHD3Q9NX63 227 aaKnown RBP8.97□□□□□ -0.97
HPS4-206ENST00000439453 PHF24Q9UPV7 400 aa8.97□□□□□ -0.97
HPS4-206ENST00000439453 IVNS1ABPQ9Y6Y0 642 aa8.97□□□□□ -0.97
HPS4-206ENST00000439453 LTBP2Q14767 1821 aa8.97□□□□□ -0.97
HPS4-206ENST00000439453 TISP43B9A030 160 aa8.97□□□□□ -0.97
HPS4-206ENST00000439453 DNALI1O14645 258 aaPredicted RBP8.97□□□□□ -0.97
HPS4-206ENST00000439453 RARBP10826 455 aa8.97□□□□□ -0.97
HPS4-206ENST00000439453 CIITAP33076 1130 aa8.97□□□□□ -0.97
HPS4-206ENST00000439453 ZNF76P36508 570 aa8.97□□□□□ -0.97
HPS4-206ENST00000439453 MFAP3P55082 362 aa8.97□□□□□ -0.97
HPS4-206ENST00000439453 RASA2Q15283 850 aa8.97□□□□□ -0.97
HPS4-206ENST00000439453 KLHL23Q8NBE8 558 aa8.97□□□□□ -0.97
HPS4-206ENST00000439453 TINF2Q9BSI4 451 aa8.97□□□□□ -0.97
HPS4-206ENST00000439453 TMEM120AQ9BXJ8 343 aa8.97□□□□□ -0.97
HPS4-206ENST00000439453 MTO1Q9Y2Z2 717 aaKnown RBP8.97□□□□□ -0.97
HPS4-206ENST00000439453 CHMP2AO43633 222 aa8.96□□□□□ -0.97
HPS4-206ENST00000439453 ANPEPP15144 967 aa8.96□□□□□ -0.97
HPS4-206ENST00000439453 MXI1P50539 228 aa8.96□□□□□ -0.97
HPS4-206ENST00000439453 CDK7P50613 346 aa8.96□□□□□ -0.97
HPS4-206ENST00000439453 RAP1GDS1P52306 607 aa8.96□□□□□ -0.97
HPS4-206ENST00000439453 DSG1Q02413 1049 aa8.96□□□□□ -0.97
HPS4-206ENST00000439453 PPP2R5CQ13362 524 aa8.96□□□□□ -0.97
HPS4-206ENST00000439453 KCTD2Q14681 263 aa8.96□□□□□ -0.97
HPS4-206ENST00000439453 CCDC142Q17RM4 750 aa8.96□□□□□ -0.97
HPS4-206ENST00000439453 PHLDB2Q86SQ0 1253 aa8.96□□□□□ -0.97
HPS4-206ENST00000439453 SYTL5Q8TDW5 730 aaPredicted RBP8.96□□□□□ -0.97
HPS4-206ENST00000439453 FAM161BQ96MY7 647 aa8.96□□□□□ -0.97
HPS4-206ENST00000439453 ECSITQ9BQ95 431 aa8.96□□□□□ -0.97
HPS4-206ENST00000439453 STRA6Q9BX79 667 aa8.96□□□□□ -0.97
HPS4-206ENST00000439453 TSSK1BQ9BXA7 367 aa8.96□□□□□ -0.97
HPS4-206ENST00000439453 AMNQ9BXJ7 453 aa8.96□□□□□ -0.97
HPS4-206ENST00000439453 TMEM117Q9H0C3 514 aa8.96□□□□□ -0.97
HPS4-206ENST00000439453 PPCSQ9HAB8 311 aa8.96□□□□□ -0.97
HPS4-206ENST00000439453 KCNK13Q9HB14 408 aa8.96□□□□□ -0.97
HPS4-206ENST00000439453 COMMD3-BMI1R4GMX3 469 aa8.96□□□□□ -0.97
HPS4-206ENST00000439453 FOSP01100 380 aaPredicted RBP8.96□□□□□ -0.98
HPS4-206ENST00000439453 RGS19P49795 217 aa8.96□□□□□ -0.98
HPS4-206ENST00000439453 SOX10P56693 466 aa8.96□□□□□ -0.98
HPS4-206ENST00000439453 USP4Q13107 963 aa8.96□□□□□ -0.98
HPS4-206ENST00000439453 LSAMPQ13449 338 aa8.96□□□□□ -0.98
HPS4-206ENST00000439453 CLEC16AQ2KHT3 1053 aa8.96□□□□□ -0.98
HPS4-206ENST00000439453 LRRC6Q86X45 466 aa8.96□□□□□ -0.98
HPS4-206ENST00000439453 GLIS1Q8NBF1 620 aa8.96□□□□□ -0.98
HPS4-206ENST00000439453 PLEKHO2Q8TD55 490 aa8.96□□□□□ -0.98
HPS4-206ENST00000439453 TCP10LQ8TDR4 215 aa8.96□□□□□ -0.98
HPS4-206ENST00000439453 DDX1Q92499 740 aaKnown RBP8.96□□□□□ -0.98
HPS4-206ENST00000439453 XRN2Q9H0D6 950 aaKnown RBP eCLIP8.96□□□□□ -0.98
HPS4-206ENST00000439453 C12orf65Q9H3J6 166 aaKnown RBP8.96□□□□□ -0.98
HPS4-206ENST00000439453 ALG13Q9NP73 1137 aaKnown RBP8.96□□□□□ -0.98
HPS4-206ENST00000439453 IL1RAPL1Q9NZN1 696 aa8.96□□□□□ -0.98
HPS4-206ENST00000439453 G3BP2Q9UN86 482 aaKnown RBP8.96□□□□□ -0.98
HPS4-206ENST00000439453 F8W8V4 182 aa8.96□□□□□ -0.98
HPS4-206ENST00000439453 ALOX15BO15296 676 aa8.96□□□□□ -0.98
HPS4-206ENST00000439453 PENKP01210 267 aaPredicted RBP8.96□□□□□ -0.98
HPS4-206ENST00000439453 PTP4A2Q12974 167 aa8.96□□□□□ -0.98
HPS4-206ENST00000439453 DPP9Q86TI2 863 aa8.96□□□□□ -0.98
HPS4-206ENST00000439453 ZBED8Q8IZ13 594 aa8.96□□□□□ -0.98
HPS4-206ENST00000439453 DDX51Q8N8A6 666 aaKnown RBP eCLIP8.96□□□□□ -0.98
HPS4-206ENST00000439453 FNBP1Q96RU3 617 aa8.96□□□□□ -0.98
HPS4-206ENST00000439453 HAPLN3Q96S86 360 aa8.96□□□□□ -0.98
HPS4-206ENST00000439453 IWS1Q96ST2 819 aa8.96□□□□□ -0.98
HPS4-206ENST00000439453 MAF1Q9H063 256 aa8.96□□□□□ -0.98
HPS4-206ENST00000439453 VPS11Q9H270 941 aa8.96□□□□□ -0.98
HPS4-206ENST00000439453 ZSCAN5DPP0CG00 497 aa8.95□□□□□ -0.98
HPS4-206ENST00000439453 EN2P19622 333 aaPredicted RBP8.95□□□□□ -0.98
HPS4-206ENST00000439453 GJA8P48165 433 aa8.95□□□□□ -0.98
HPS4-206ENST00000439453 GEMIN4P57678 1058 aaKnown RBP8.95□□□□□ -0.98
HPS4-206ENST00000439453 EFHC2Q5JST6 749 aa8.95□□□□□ -0.98
HPS4-206ENST00000439453 TAPT1Q6NXT6 567 aa8.95□□□□□ -0.98
HPS4-206ENST00000439453 ARMCX2Q7L311 632 aa8.95□□□□□ -0.98
HPS4-206ENST00000439453 TTC7BQ86TV6 843 aa8.95□□□□□ -0.98
HPS4-206ENST00000439453 TRIM74Q86UV6 250 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms