RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 CBWD5Q5RIA9 395 aa12.97□□□□□ -0.33
PTPRF-208ENST00000437607 STXBP5Q5T5C0 1151 aa12.97□□□□□ -0.33
PTPRF-208ENST00000437607 IQCEQ6IPM2 695 aa12.97□□□□□ -0.33
PTPRF-208ENST00000437607 NT5DC4Q86YG4 428 aa12.97□□□□□ -0.33
PTPRF-208ENST00000437607 ELMOD1Q8N336 334 aa12.97□□□□□ -0.33
PTPRF-208ENST00000437607 GPR161Q8N6U8 529 aaKnown RBP12.97□□□□□ -0.33
PTPRF-208ENST00000437607 APPL2Q8NEU8 664 aa12.97□□□□□ -0.33
PTPRF-208ENST00000437607 NEK11Q8NG66 645 aa12.97□□□□□ -0.33
PTPRF-208ENST00000437607 DEPDC1BQ8WUY9 529 aa12.97□□□□□ -0.33
PTPRF-208ENST00000437607 KIF12Q96FN5 646 aa12.97□□□□□ -0.33
PTPRF-208ENST00000437607 IMPG2Q9BZV3 1241 aa12.97□□□□□ -0.33
PTPRF-208ENST00000437607 MTMR12Q9C0I1 747 aa12.97□□□□□ -0.33
PTPRF-208ENST00000437607 PLEKHA5Q9HAU0 1116 aa12.97□□□□□ -0.33
PTPRF-208ENST00000437607 ASAH2Q9NR71 780 aa12.97□□□□□ -0.33
PTPRF-208ENST00000437607 MAFFQ9ULX9 164 aa12.97□□□□□ -0.33
PTPRF-208ENST00000437607 C2CD2Q9Y426 696 aa12.97□□□□□ -0.33
PTPRF-208ENST00000437607 PTPRDP23468 1912 aa12.96□□□□□ -0.33
PTPRF-208ENST00000437607 PTPRJQ12913 1337 aa12.96□□□□□ -0.33
PTPRF-208ENST00000437607 LACTBL1A8MY62 500 aa12.96□□□□□ -0.33
PTPRF-208ENST00000437607 PPEF2O14830 753 aa12.96□□□□□ -0.33
PTPRF-208ENST00000437607 PBX1P40424 430 aa12.96□□□□□ -0.33
PTPRF-208ENST00000437607 GUCY2FP51841 1108 aa12.96□□□□□ -0.33
PTPRF-208ENST00000437607 SATB1Q01826 763 aa12.96□□□□□ -0.33
PTPRF-208ENST00000437607 YWHAHQ04917 246 aaPredicted RBP12.96□□□□□ -0.33
PTPRF-208ENST00000437607 DMWDQ09019 674 aa12.96□□□□□ -0.33
PTPRF-208ENST00000437607 DUSP4Q13115 394 aa12.96□□□□□ -0.33
PTPRF-208ENST00000437607 LPAL2Q16609 132 aa12.96□□□□□ -0.33
PTPRF-208ENST00000437607 C1orf220Q5T0J3 134 aa12.96□□□□□ -0.33
PTPRF-208ENST00000437607 JADE1Q6IE81 842 aa12.96□□□□□ -0.33
PTPRF-208ENST00000437607 GPIHBP1Q8IV16 184 aa12.96□□□□□ -0.33
PTPRF-208ENST00000437607 EFCAB13Q8IY85 973 aa12.96□□□□□ -0.33
PTPRF-208ENST00000437607 LEMD2Q8NC56 503 aa12.96□□□□□ -0.33
PTPRF-208ENST00000437607 CCDC150Q8NCX0 1101 aa12.96□□□□□ -0.33
PTPRF-208ENST00000437607 FBXL13Q8NEE6 735 aa12.96□□□□□ -0.33
PTPRF-208ENST00000437607 CACTINQ8WUQ7 758 aaKnown RBP12.96□□□□□ -0.33
PTPRF-208ENST00000437607 PDLIM2Q96JY6 352 aa12.96□□□□□ -0.33
PTPRF-208ENST00000437607 LRRC3BQ96PB8 259 aa12.96□□□□□ -0.33
PTPRF-208ENST00000437607 PGLYRP2Q96PD5 576 aa12.96□□□□□ -0.33
PTPRF-208ENST00000437607 CRACR2AQ9BSW2 395 aa12.96□□□□□ -0.33
PTPRF-208ENST00000437607 INTS2Q9H0H0 1204 aaKnown RBP12.96□□□□□ -0.33
PTPRF-208ENST00000437607 FAM207AQ9NSI2 230 aaPredicted RBP12.96□□□□□ -0.33
PTPRF-208ENST00000437607 IMPACTQ9P2X3 320 aa12.96□□□□□ -0.33
PTPRF-208ENST00000437607 SIK3Q9Y2K2 1263 aa12.96□□□□□ -0.33
PTPRF-208ENST00000437607 DERAQ9Y315 318 aa12.96□□□□□ -0.33
PTPRF-208ENST00000437607 R3HCC1Q9Y3T6 440 aaKnown RBP12.96□□□□□ -0.33
PTPRF-208ENST00000437607 USP24Q9UPU5 2620 aa12.95□□□□□ -0.34
PTPRF-208ENST00000437607 A0A1W2PRU2 124 aa12.95□□□□□ -0.34
PTPRF-208ENST00000437607 ZNF263O14978 683 aa12.95□□□□□ -0.34
PTPRF-208ENST00000437607 PMM2O15305 246 aa12.95□□□□□ -0.34
PTPRF-208ENST00000437607 HOXC13P31276 330 aa12.95□□□□□ -0.34
PTPRF-208ENST00000437607 SOX9P48436 509 aa12.95□□□□□ -0.34
PTPRF-208ENST00000437607 CCR3P51677 355 aa12.95□□□□□ -0.34
PTPRF-208ENST00000437607 GSDMDP57764 484 aa12.95□□□□□ -0.34
PTPRF-208ENST00000437607 MCCD1P59942 119 aaPredicted RBP12.95□□□□□ -0.34
PTPRF-208ENST00000437607 CLDN10P78369 228 aa12.95□□□□□ -0.34
PTPRF-208ENST00000437607 FCHO2Q0JRZ9 810 aa12.95□□□□□ -0.34
PTPRF-208ENST00000437607 SPEM2Q0P670 501 aa12.95□□□□□ -0.34
PTPRF-208ENST00000437607 GPR17Q13304 367 aa12.95□□□□□ -0.34
PTPRF-208ENST00000437607 TRPC3Q13507 836 aa12.95□□□□□ -0.34
PTPRF-208ENST00000437607 DUOXA2Q1HG44 320 aa12.95□□□□□ -0.34
PTPRF-208ENST00000437607 ZACNQ401N2 412 aa12.95□□□□□ -0.34
PTPRF-208ENST00000437607 TDRD10Q5VZ19 366 aaKnown RBP12.95□□□□□ -0.34
PTPRF-208ENST00000437607 TXNDC11Q6PKC3 985 aa12.95□□□□□ -0.34
PTPRF-208ENST00000437607 SV2AQ7L0J3 742 aa12.95□□□□□ -0.34
PTPRF-208ENST00000437607 TTC9BQ8N6N2 239 aa12.95□□□□□ -0.34
PTPRF-208ENST00000437607 CNTNAP3BQ96NU0 1288 aa12.95□□□□□ -0.34
PTPRF-208ENST00000437607 TSPAN18Q96SJ8 248 aa12.95□□□□□ -0.34
PTPRF-208ENST00000437607 TMEM209Q96SK2 561 aa12.95□□□□□ -0.34
PTPRF-208ENST00000437607 IER2Q9BTL4 223 aa12.95□□□□□ -0.34
PTPRF-208ENST00000437607 NUP58Q9BVL2 599 aa12.95□□□□□ -0.34
PTPRF-208ENST00000437607 CNTNAP3Q9BZ76 1288 aa12.95□□□□□ -0.34
PTPRF-208ENST00000437607 RBM12Q9NTZ6 932 aaKnown RBP12.95□□□□□ -0.34
PTPRF-208ENST00000437607 C2orf42Q9NWW7 574 aa12.95□□□□□ -0.34
PTPRF-208ENST00000437607 USP18Q9UMW8 372 aa12.95□□□□□ -0.34
PTPRF-208ENST00000437607 SLC27A5Q9Y2P5 690 aa12.95□□□□□ -0.34
PTPRF-208ENST00000437607 DAAM1Q9Y4D1 1078 aa12.95□□□□□ -0.34
PTPRF-208ENST00000437607 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.95□□□□□ -0.34
PTPRF-208ENST00000437607 DCDC2BA2VCK2 349 aa12.94□□□□□ -0.34
PTPRF-208ENST00000437607 MTMR11A4FU01 709 aa12.94□□□□□ -0.34
PTPRF-208ENST00000437607 SLC38A8A6NNN8 435 aa12.94□□□□□ -0.34
PTPRF-208ENST00000437607 PRR5-ARHGAP8B1AHC4 643 aa12.94□□□□□ -0.34
PTPRF-208ENST00000437607 CHADO15335 359 aa12.94□□□□□ -0.34
PTPRF-208ENST00000437607 SOAT2O75908 522 aa12.94□□□□□ -0.34
PTPRF-208ENST00000437607 HLA-DRAP01903 254 aa12.94□□□□□ -0.34
PTPRF-208ENST00000437607 CYP3A5P20815 502 aa12.94□□□□□ -0.34
PTPRF-208ENST00000437607 KLK7P49862 253 aa12.94□□□□□ -0.34
PTPRF-208ENST00000437607 NRLP54845 237 aa12.94□□□□□ -0.34
PTPRF-208ENST00000437607 MLLT6P55198 1093 aaPredicted RBP12.94□□□□□ -0.34
PTPRF-208ENST00000437607 ARHGAP8P85298 464 aa12.94□□□□□ -0.34
PTPRF-208ENST00000437607 LMNB2Q03252 620 aa12.94□□□□□ -0.34
PTPRF-208ENST00000437607 TRIM65Q6PJ69 517 aa12.94□□□□□ -0.34
PTPRF-208ENST00000437607 Q6ZS52 159 aa12.94□□□□□ -0.34
PTPRF-208ENST00000437607 GAREM2Q75VX8 874 aa12.94□□□□□ -0.34
PTPRF-208ENST00000437607 CACNA2D4Q7Z3S7 1137 aa12.94□□□□□ -0.34
PTPRF-208ENST00000437607 CNGA4Q8IV77 575 aa12.94□□□□□ -0.34
PTPRF-208ENST00000437607 OR5B17Q8NGF7 314 aa12.94□□□□□ -0.34
PTPRF-208ENST00000437607 TAS1R2Q8TE23 839 aa12.94□□□□□ -0.34
PTPRF-208ENST00000437607 SECISBP2LQ93073 1101 aaKnown RBP12.94□□□□□ -0.34
PTPRF-208ENST00000437607 NT5C1BQ96P26 610 aa12.94□□□□□ -0.34
PTPRF-208ENST00000437607 PPP1R9BQ96SB3 815 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms