RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 MKLN1Q9UL63 735 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 CSADQ9Y600 493 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 HOXC9P31274 260 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 CXCR5P32302 372 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 CAPGP40121 348 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 MFSD14BQ5SR56 506 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 MAPKAPK5Q8IW41 473 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 EDC3Q96F86 508 aaKnown RBP7.44□□□□□ -1.22
VPS53-204ENST00000437048 CYP4F11Q9HBI6 524 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 QRICH2Q9H0J4 1663 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 PHGDHO43175 533 aaKnown RBP7.44□□□□□ -1.22
VPS53-204ENST00000437048 ITPKCQ96DU7 683 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 L3MBTL3Q96JM7 780 aaPredicted RBP7.44□□□□□ -1.22
VPS53-204ENST00000437048 AAR2Q9Y312 384 aaKnown RBP7.44□□□□□ -1.22
VPS53-204ENST00000437048 TRAPPC3O43617 180 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 HUS1O60921 280 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 DNAJB5O75953 348 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 LDLRP01130 860 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 FESP07332 822 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 TRAPPC3LQ5T215 181 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 SLC26A11Q86WA9 606 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 CCDC60Q8IWA6 550 aaPredicted RBP7.44□□□□□ -1.22
VPS53-204ENST00000437048 ZFYVE19Q96K21 471 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 DDX47Q9H0S4 455 aaKnown RBP7.44□□□□□ -1.22
VPS53-204ENST00000437048 RHBDL2Q9NX52 303 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 TMEM161AQ9NX61 479 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 TMEM216Q9P0N5 145 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 R3HDM2Q9Y2K5 976 aaKnown RBP7.44□□□□□ -1.22
VPS53-204ENST00000437048 ZSCAN9O15535 394 aaPredicted RBP7.44□□□□□ -1.22
VPS53-204ENST00000437048 ENO1P06733 434 aaKnown RBP7.44□□□□□ -1.22
VPS53-204ENST00000437048 TGM3Q08188 693 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 CNTN1Q12860 1018 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 HIST2H2ACQ16777 129 aaPredicted RBP7.44□□□□□ -1.22
VPS53-204ENST00000437048 ZC2HC1CQ53FD0 456 aaPredicted RBP7.44□□□□□ -1.22
VPS53-204ENST00000437048 RNF43Q68DV7 783 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 HIST2H2AA3Q6FI13 130 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 MRNIPQ6NTE8 343 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 MRPL4Q9BYD3 311 aaKnown RBP7.44□□□□□ -1.22
VPS53-204ENST00000437048 PTTG2Q9NZH5 202 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 ITGA2P17301 1181 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 PPIBP23284 216 aaKnown RBP7.44□□□□□ -1.22
VPS53-204ENST00000437048 FGD2Q7Z6J4 655 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 CDK5RAP1Q96SZ6 601 aaKnown RBP7.44□□□□□ -1.22
VPS53-204ENST00000437048 KLHL28Q9NXS3 571 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 PLK2Q9NYY3 685 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 UBXN8O00124 270 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 TEX28O15482 410 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 FTLP02792 175 aaPredicted RBP7.44□□□□□ -1.22
VPS53-204ENST00000437048 ME2P23368 584 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 ACADLP28330 430 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 EIF6P56537 245 aaKnown RBP7.44□□□□□ -1.22
VPS53-204ENST00000437048 CCDC85BQ15834 202 aaPredicted RBP7.44□□□□□ -1.22
VPS53-204ENST00000437048 LBHD1Q9BQE6 289 aaPredicted RBP7.44□□□□□ -1.22
VPS53-204ENST00000437048 TRMOQ9BU70 441 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 RPS6KA6Q9UK32 745 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 FRG1Q14331 258 aaKnown RBP7.44□□□□□ -1.22
VPS53-204ENST00000437048 MXD4Q14582 209 aaPredicted RBP7.44□□□□□ -1.22
VPS53-204ENST00000437048 INTS11Q5TA45 600 aaKnown RBP7.44□□□□□ -1.22
VPS53-204ENST00000437048 CLEC4GQ6UXB4 293 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 ADSSL1Q8N142 457 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 FAM162AQ96A26 154 aa7.44□□□□□ -1.22
VPS53-204ENST00000437048 AVENQ9NQS1 362 aaPredicted RBP7.44□□□□□ -1.22
VPS53-204ENST00000437048 SFI1A8K8P3 1242 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 C21orf2O43822 256 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 MPZL2O60487 215 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 PARNO95453 639 aaKnown RBP7.43□□□□□ -1.22
VPS53-204ENST00000437048 NPTXRO95502 500 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 MYCLP12524 364 aaPredicted RBP7.43□□□□□ -1.22
VPS53-204ENST00000437048 CDH6P55285 790 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 ZCCHC8Q6NZY4 707 aaKnown RBP7.43□□□□□ -1.22
VPS53-204ENST00000437048 ANGPTL8Q6UXH0 198 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 TMEM179Q6ZVK1 233 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 PTPRN2Q92932 1015 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 LRRC7Q96NW7 1537 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 RAD51BO15315 384 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 RALAP11233 206 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 BMP3P12645 472 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 VAMP7P51809 220 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 TMEM44Q2T9K0 475 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 DDIASQ8IXT1 998 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 ZNF786Q8N393 782 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 RAPGEF5Q92565 580 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 FAM149B1Q96BN6 582 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 SEC14L4Q9UDX3 406 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 MDM4O15151 490 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 ZMYND10O75800 440 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 HSD17B3P37058 310 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 TMEM126BQ8IUX1 230 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 SPAG16Q8N0X2 631 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 HIPK4Q8NE63 616 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 AGR3Q8TD06 166 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 PARD3BQ8TEW8 1205 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 SPRTNQ9H040 489 aaPredicted RBP7.43□□□□□ -1.22
VPS53-204ENST00000437048 PFDN2Q9UHV9 154 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 PRKAR1AP10644 381 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 POLD1P28340 1107 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 TFAMQ00059 246 aaKnown RBP7.43□□□□□ -1.22
VPS53-204ENST00000437048 RASA2Q15283 850 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 LRRC17Q8N6Y2 441 aa7.43□□□□□ -1.22
VPS53-204ENST00000437048 FCGR1BQ92637 280 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms