RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 TTYH3Q9C0H2 523 aa13.18□□□□□ -0.3
USP40-205ENST00000430158 POMKQ9H5K3 350 aa13.18□□□□□ -0.3
USP40-205ENST00000430158 ZNF334Q9HCZ1 680 aaPredicted RBP13.18□□□□□ -0.3
USP40-205ENST00000430158 FAM207AQ9NSI2 230 aaPredicted RBP13.18□□□□□ -0.3
USP40-205ENST00000430158 ASB3Q9Y575 518 aa13.18□□□□□ -0.3
USP40-205ENST00000430158 F8VP50 259 aa13.17□□□□□ -0.3
USP40-205ENST00000430158 XYLBO75191 536 aa13.17□□□□□ -0.3
USP40-205ENST00000430158 SERPINC1P01008 464 aa13.17□□□□□ -0.3
USP40-205ENST00000430158 LRG1P02750 347 aa13.17□□□□□ -0.3
USP40-205ENST00000430158 RHOP08100 348 aa13.17□□□□□ -0.3
USP40-205ENST00000430158 IL9P15248 144 aa13.17□□□□□ -0.3
USP40-205ENST00000430158 MTHFRP42898 656 aa13.17□□□□□ -0.3
USP40-205ENST00000430158 ALDH1A3P47895 512 aa13.17□□□□□ -0.3
USP40-205ENST00000430158 UBASH3AP57075 661 aa13.17□□□□□ -0.3
USP40-205ENST00000430158 RPL10AP62906 217 aaKnown RBP13.17□□□□□ -0.3
USP40-205ENST00000430158 TPM4P67936 248 aa13.17□□□□□ -0.3
USP40-205ENST00000430158 MRPS5P82675 430 aaKnown RBP13.17□□□□□ -0.3
USP40-205ENST00000430158 PLD1Q13393 1074 aa13.17□□□□□ -0.3
USP40-205ENST00000430158 MTMR3Q13615 1198 aa13.17□□□□□ -0.3
USP40-205ENST00000430158 CBX2Q14781 532 aaPredicted RBP13.17□□□□□ -0.3
USP40-205ENST00000430158 CNGA2Q16280 664 aa13.17□□□□□ -0.3
USP40-205ENST00000430158 SLC5A9Q2M3M2 681 aa13.17□□□□□ -0.3
USP40-205ENST00000430158 PUS10Q3MIT2 529 aaKnown RBP13.17□□□□□ -0.3
USP40-205ENST00000430158 LCLAT1Q6UWP7 414 aa13.17□□□□□ -0.3
USP40-205ENST00000430158 CLEC20AQ6ZU45 233 aa13.17□□□□□ -0.3
USP40-205ENST00000430158 GRASPQ7Z6J2 395 aaPredicted RBP13.17□□□□□ -0.3
USP40-205ENST00000430158 TTC30AQ86WT1 665 aa13.17□□□□□ -0.3
USP40-205ENST00000430158 ANKRD52Q8NB46 1076 aa13.17□□□□□ -0.3
USP40-205ENST00000430158 STKLD1Q8NE28 680 aa13.17□□□□□ -0.3
USP40-205ENST00000430158 BAP1Q92560 729 aa13.17□□□□□ -0.3
USP40-205ENST00000430158 SMARCD1Q96GM5 515 aa13.17□□□□□ -0.3
USP40-205ENST00000430158 ASB2Q96Q27 587 aa13.17□□□□□ -0.3
USP40-205ENST00000430158 TTLL2Q9BWV7 592 aa13.17□□□□□ -0.3
USP40-205ENST00000430158 DUSP16Q9BY84 665 aa13.17□□□□□ -0.3
USP40-205ENST00000430158 XPO4Q9C0E2 1151 aaKnown RBP13.17□□□□□ -0.3
USP40-205ENST00000430158 IFNKQ9P0W0 207 aa13.17□□□□□ -0.3
USP40-205ENST00000430158 DAAM1Q9Y4D1 1078 aa13.17□□□□□ -0.3
USP40-205ENST00000430158 VCANP13611 3396 aa13.17□□□□□ -0.3
USP40-205ENST00000430158 FAM92AA1XBS5 289 aa13.16□□□□□ -0.3
USP40-205ENST00000430158 SLC38A8A6NNN8 435 aa13.16□□□□□ -0.3
USP40-205ENST00000430158 F8VZ95 297 aa13.16□□□□□ -0.3
USP40-205ENST00000430158 CYP26A1O43174 497 aa13.16□□□□□ -0.3
USP40-205ENST00000430158 AP1G2O75843 785 aa13.16□□□□□ -0.3
USP40-205ENST00000430158 CFHP08603 1231 aa13.16□□□□□ -0.3
USP40-205ENST00000430158 PTPN2P17706 415 aa13.16□□□□□ -0.3
USP40-205ENST00000430158 BRD2P25440 801 aaKnown RBP13.16□□□□□ -0.3
USP40-205ENST00000430158 ADORA2BP29275 332 aa13.16□□□□□ -0.3
USP40-205ENST00000430158 EPHB3P54753 998 aa13.16□□□□□ -0.3
USP40-205ENST00000430158 POLR2FP61218 127 aaKnown RBP13.16□□□□□ -0.3
USP40-205ENST00000430158 USP46P62068 366 aa13.16□□□□□ -0.3
USP40-205ENST00000430158 FILIP1LQ4L180 1135 aa13.16□□□□□ -0.3
USP40-205ENST00000430158 SGO2Q562F6 1265 aa13.16□□□□□ -0.3
USP40-205ENST00000430158 CES5AQ6NT32 575 aa13.16□□□□□ -0.3
USP40-205ENST00000430158 SARM1Q6SZW1 724 aa13.16□□□□□ -0.3
USP40-205ENST00000430158 GAREM2Q75VX8 874 aa13.16□□□□□ -0.3
USP40-205ENST00000430158 SCN4BQ8IWT1 228 aa13.16□□□□□ -0.3
USP40-205ENST00000430158 ITFG1Q8TB96 612 aa13.16□□□□□ -0.3
USP40-205ENST00000430158 GIPC2Q8TF65 315 aa13.16□□□□□ -0.3
USP40-205ENST00000430158 TCEAL4Q96EI5 215 aa13.16□□□□□ -0.3
USP40-205ENST00000430158 TRMT2BQ96GJ1 504 aaKnown RBP13.16□□□□□ -0.3
USP40-205ENST00000430158 RIPOR3Q96MK2 946 aa13.16□□□□□ -0.3
USP40-205ENST00000430158 NECTIN4Q96NY8 510 aa13.16□□□□□ -0.3
USP40-205ENST00000430158 UBXN6Q9BZV1 441 aa13.16□□□□□ -0.3
USP40-205ENST00000430158 KRT82Q9NSB4 513 aa13.16□□□□□ -0.3
USP40-205ENST00000430158 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.16□□□□□ -0.3
USP40-205ENST00000430158 CLUHO75153 1309 aa13.15□□□□□ -0.3
USP40-205ENST00000430158 TULP2O00295 520 aa13.15□□□□□ -0.3
USP40-205ENST00000430158 TRIM66O15016 1216 aa13.15□□□□□ -0.3
USP40-205ENST00000430158 TADA3O75528 432 aa13.15□□□□□ -0.3
USP40-205ENST00000430158 MICAL2O94851 1124 aa13.15□□□□□ -0.3
USP40-205ENST00000430158 F11P03951 625 aa13.15□□□□□ -0.3
USP40-205ENST00000430158 KRT5P13647 590 aa13.15□□□□□ -0.3
USP40-205ENST00000430158 NPR3P17342 541 aa13.15□□□□□ -0.3
USP40-205ENST00000430158 GRIK1P39086 918 aa13.15□□□□□ -0.3
USP40-205ENST00000430158 RPL34P49207 117 aaKnown RBP13.15□□□□□ -0.3
USP40-205ENST00000430158 MEA1Q16626 185 aa13.15□□□□□ -0.3
USP40-205ENST00000430158 AAK1Q2M2I8 961 aa13.15□□□□□ -0.3
USP40-205ENST00000430158 FIGNQ5HY92 759 aa13.15□□□□□ -0.3
USP40-205ENST00000430158 GPRIN1Q7Z2K8 1008 aa13.15□□□□□ -0.3
USP40-205ENST00000430158 NEK11Q8NG66 645 aa13.15□□□□□ -0.3
USP40-205ENST00000430158 OLIG1Q8TAK6 271 aa13.15□□□□□ -0.3
USP40-205ENST00000430158 SHKBP1Q8TBC3 707 aa13.15□□□□□ -0.3
USP40-205ENST00000430158 ZNF606Q8WXB4 792 aa13.15□□□□□ -0.3
USP40-205ENST00000430158 DDX1Q92499 740 aaKnown RBP13.15□□□□□ -0.3
USP40-205ENST00000430158 ZNF512Q96ME7 567 aaPredicted RBP13.15□□□□□ -0.3
USP40-205ENST00000430158 CORO1BQ9BR76 489 aa13.15□□□□□ -0.3
USP40-205ENST00000430158 MED10Q9BTT4 135 aa13.15□□□□□ -0.3
USP40-205ENST00000430158 PHF7Q9BWX1 381 aaPredicted RBP13.15□□□□□ -0.3
USP40-205ENST00000430158 PNPLA8Q9NP80 782 aa13.15□□□□□ -0.3
USP40-205ENST00000430158 DMAP1Q9NPF5 467 aaPredicted RBP13.15□□□□□ -0.3
USP40-205ENST00000430158 NLRC4Q9NPP4 1024 aa13.15□□□□□ -0.3
USP40-205ENST00000430158 TSPAN16Q9UKR8 245 aa13.15□□□□□ -0.3
USP40-205ENST00000430158 ATP8B3O60423 1300 aa13.14□□□□□ -0.31
USP40-205ENST00000430158 FAM200BP0CF97 657 aa13.14□□□□□ -0.31
USP40-205ENST00000430158 CSH1P0DML2 217 aa13.14□□□□□ -0.31
USP40-205ENST00000430158 CSH2P0DML3 217 aa13.14□□□□□ -0.31
USP40-205ENST00000430158 CD19P15391 556 aa13.14□□□□□ -0.31
USP40-205ENST00000430158 GPD2P43304 727 aa13.14□□□□□ -0.31
USP40-205ENST00000430158 MAP3K7CLP57077 242 aa13.14□□□□□ -0.31
USP40-205ENST00000430158 PDE4CQ08493 712 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms