RNA–Protein interactions for RNA: ENST00000430038.5

CPSF4-203, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 5

Gene CPSF4, Length 735 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-203ENST00000430038 ZMYM5Q9UJ78 669 aa18.25■□□□□ 0.51
CPSF4-203ENST00000430038 CFAP45Q9UL16 551 aa18.25■□□□□ 0.51
CPSF4-203ENST00000430038 F8VP50 259 aa18.24■□□□□ 0.51
CPSF4-203ENST00000430038 EXOC3O60645 756 aa18.24■□□□□ 0.51
CPSF4-203ENST00000430038 STAU1O95793 577 aaKnown RBP18.24■□□□□ 0.51
CPSF4-203ENST00000430038 GJA4P35212 333 aa18.24■□□□□ 0.51
CPSF4-203ENST00000430038 PXNP49023 591 aaPredicted RBP18.24■□□□□ 0.51
CPSF4-203ENST00000430038 FAM160A1Q05DH4 1040 aa18.24■□□□□ 0.51
CPSF4-203ENST00000430038 USP4Q13107 963 aa18.24■□□□□ 0.51
CPSF4-203ENST00000430038 MTF1Q14872 753 aa18.24■□□□□ 0.51
CPSF4-203ENST00000430038 EML3Q32P44 896 aa18.24■□□□□ 0.51
CPSF4-203ENST00000430038 C1orf228Q6PIY5 440 aa18.24■□□□□ 0.51
CPSF4-203ENST00000430038 VSTM1Q6UX27 236 aa18.24■□□□□ 0.51
CPSF4-203ENST00000430038 C4orf50Q6ZRC1 276 aa18.24■□□□□ 0.51
CPSF4-203ENST00000430038 HS2ST1Q7LGA3 356 aa18.24■□□□□ 0.51
CPSF4-203ENST00000430038 SH3RF2Q8TEC5 729 aa18.24■□□□□ 0.51
CPSF4-203ENST00000430038 TTLL2Q9BWV7 592 aa18.24■□□□□ 0.51
CPSF4-203ENST00000430038 ECT2Q9H8V3 914 aa18.24■□□□□ 0.51
CPSF4-203ENST00000430038 KIF9Q9HAQ2 790 aa18.24■□□□□ 0.51
CPSF4-203ENST00000430038 DLL3Q9NYJ7 618 aa18.24■□□□□ 0.51
CPSF4-203ENST00000430038 USP17L7P0C7H9 530 aa18.23■□□□□ 0.51
CPSF4-203ENST00000430038 PDIA4P13667 645 aaKnown RBP18.23■□□□□ 0.51
CPSF4-203ENST00000430038 HDCP19113 662 aa18.23■□□□□ 0.51
CPSF4-203ENST00000430038 CMA1P23946 247 aa18.23■□□□□ 0.51
CPSF4-203ENST00000430038 NRLP54845 237 aa18.23■□□□□ 0.51
CPSF4-203ENST00000430038 GAB4Q2WGN9 574 aa18.23■□□□□ 0.51
CPSF4-203ENST00000430038 CEP57L1Q8IYX8 460 aa18.23■□□□□ 0.51
CPSF4-203ENST00000430038 OSCP1Q8WVF1 389 aa18.23■□□□□ 0.51
CPSF4-203ENST00000430038 KCNK16Q96T55 309 aa18.23■□□□□ 0.51
CPSF4-203ENST00000430038 SNX25Q9H3E2 840 aa18.23■□□□□ 0.51
CPSF4-203ENST00000430038 DUS2Q9NX74 493 aaKnown RBP18.23■□□□□ 0.51
CPSF4-203ENST00000430038 R3HCC1Q9Y3T6 440 aaKnown RBP18.23■□□□□ 0.51
CPSF4-203ENST00000430038 MYO18AQ92614 2054 aaKnown RBP18.22■□□□□ 0.51
CPSF4-203ENST00000430038 TRAV19A0A0A6YYK7 116 aa18.22■□□□□ 0.51
CPSF4-203ENST00000430038 MED19A0JLT2 244 aaPredicted RBP18.22■□□□□ 0.51
CPSF4-203ENST00000430038 ZNF840PA6NDX5 716 aa18.22■□□□□ 0.51
CPSF4-203ENST00000430038 SCAMP3O14828 347 aaKnown RBP18.22■□□□□ 0.51
CPSF4-203ENST00000430038 CKMP06732 381 aa18.22■□□□□ 0.51
CPSF4-203ENST00000430038 PGFP49763 221 aa18.22■□□□□ 0.51
CPSF4-203ENST00000430038 NDUFA8P51970 172 aa18.22■□□□□ 0.51
CPSF4-203ENST00000430038 RSPO4Q2I0M5 234 aaPredicted RBP18.22■□□□□ 0.51
CPSF4-203ENST00000430038 DENND5BQ6ZUT9 1274 aa18.22■□□□□ 0.51
CPSF4-203ENST00000430038 SYNPOQ8N3V7 929 aa18.22■□□□□ 0.51
CPSF4-203ENST00000430038 TMEM174Q8WUU8 243 aa18.22■□□□□ 0.51
CPSF4-203ENST00000430038 C8orf48Q96LL4 319 aa18.22■□□□□ 0.51
CPSF4-203ENST00000430038 GOLPH3LQ9H4A5 285 aa18.22■□□□□ 0.51
CPSF4-203ENST00000430038 VRTNQ9H8Y1 702 aa18.22■□□□□ 0.51
CPSF4-203ENST00000430038 CGNQ9P2M7 1197 aaKnown RBP18.22■□□□□ 0.51
CPSF4-203ENST00000430038 NCOR2Q9Y618 2525 aa18.22■□□□□ 0.51
CPSF4-203ENST00000430038 FAM237AA0A1B0GTK4 181 aa18.21■□□□□ 0.51
CPSF4-203ENST00000430038 A8MXQ7 604 aa18.21■□□□□ 0.51
CPSF4-203ENST00000430038 RNF40O75150 1001 aa18.21■□□□□ 0.51
CPSF4-203ENST00000430038 FAM163BP0C2L3 166 aa18.21■□□□□ 0.51
CPSF4-203ENST00000430038 TNNC1P63316 161 aa18.21■□□□□ 0.51
CPSF4-203ENST00000430038 NOP14P78316 857 aaKnown RBP18.21■□□□□ 0.51
CPSF4-203ENST00000430038 SPEM2Q0P670 501 aa18.21■□□□□ 0.51
CPSF4-203ENST00000430038 MESP2Q0VG99 397 aa18.21■□□□□ 0.51
CPSF4-203ENST00000430038 TAF10Q12962 218 aa18.21■□□□□ 0.51
CPSF4-203ENST00000430038 ORC1Q13415 861 aa18.21■□□□□ 0.51
CPSF4-203ENST00000430038 TRPC3Q13507 836 aa18.21■□□□□ 0.51
CPSF4-203ENST00000430038 PDGFRLQ15198 375 aa18.21■□□□□ 0.51
CPSF4-203ENST00000430038 MAPRE1Q15691 268 aaKnown RBP18.21■□□□□ 0.51
CPSF4-203ENST00000430038 PRR23BQ6ZRT6 265 aa18.21■□□□□ 0.51
CPSF4-203ENST00000430038 LONP2Q86WA8 852 aa18.21■□□□□ 0.51
CPSF4-203ENST00000430038 SLC9A9Q8IVB4 645 aa18.21■□□□□ 0.51
CPSF4-203ENST00000430038 ABCA7Q8IZY2 2146 aa18.21■□□□□ 0.51
CPSF4-203ENST00000430038 B3GALNT2Q8NCR0 500 aa18.21■□□□□ 0.51
CPSF4-203ENST00000430038 HMGXB4Q9UGU5 601 aa18.21■□□□□ 0.51
CPSF4-203ENST00000430038 ARHGAP26Q9UNA1 814 aa18.21■□□□□ 0.51
CPSF4-203ENST00000430038 LEFTY2O00292 366 aa18.2■□□□□ 0.5
CPSF4-203ENST00000430038 BEST1O76090 585 aa18.2■□□□□ 0.5
CPSF4-203ENST00000430038 OLFM2O95897 454 aa18.2■□□□□ 0.5
CPSF4-203ENST00000430038 NR3C1P04150 777 aa18.2■□□□□ 0.5
CPSF4-203ENST00000430038 TCF3P15923 654 aa18.2■□□□□ 0.5
CPSF4-203ENST00000430038 HOXA6P31267 233 aa18.2■□□□□ 0.5
CPSF4-203ENST00000430038 ATICP31939 592 aa18.2■□□□□ 0.5
CPSF4-203ENST00000430038 NCOA4Q13772 614 aa18.2■□□□□ 0.5
CPSF4-203ENST00000430038 SIM2Q14190 667 aaPredicted RBP18.2■□□□□ 0.5
CPSF4-203ENST00000430038 SPOPLQ6IQ16 392 aa18.2■□□□□ 0.5
CPSF4-203ENST00000430038 CC2D1AQ6P1N0 951 aaPredicted RBP18.2■□□□□ 0.5
CPSF4-203ENST00000430038 SCARA5Q6ZMJ2 495 aa18.2■□□□□ 0.5
CPSF4-203ENST00000430038 ERMP1Q7Z2K6 904 aa18.2■□□□□ 0.5
CPSF4-203ENST00000430038 SFTPA1Q8IWL2 248 aa18.2■□□□□ 0.5
CPSF4-203ENST00000430038 SCAMP5Q8TAC9 235 aa18.2■□□□□ 0.5
CPSF4-203ENST00000430038 SPATA32Q96LK8 384 aa18.2■□□□□ 0.5
CPSF4-203ENST00000430038 P2RY13Q9BPV8 354 aa18.2■□□□□ 0.5
CPSF4-203ENST00000430038 UTP3Q9NQZ2 479 aaKnown RBP eCLIP18.2■□□□□ 0.53e-7■■■■■ 76.5
CPSF4-203ENST00000430038 EXOC1Q9NV70 894 aa18.2■□□□□ 0.5
CPSF4-203ENST00000430038 DYNC1LI1Q9Y6G9 523 aaKnown RBP18.2■□□□□ 0.5
CPSF4-203ENST00000430038 PDXKO00764 312 aa18.19■□□□□ 0.5
CPSF4-203ENST00000430038 TNFRSF10BO14763 440 aa18.19■□□□□ 0.5
CPSF4-203ENST00000430038 PHACTR2O75167 634 aa18.19■□□□□ 0.5
CPSF4-203ENST00000430038 OAS1P00973 400 aaKnown RBP18.19■□□□□ 0.5
CPSF4-203ENST00000430038 RPN1P04843 607 aaKnown RBP18.19■□□□□ 0.5
CPSF4-203ENST00000430038 OPRD1P41143 372 aa18.19■□□□□ 0.5
CPSF4-203ENST00000430038 GRSF1Q12849 480 aaKnown RBP eCLIP18.19■□□□□ 0.5
CPSF4-203ENST00000430038 DPYDQ12882 1025 aa18.19■□□□□ 0.5
CPSF4-203ENST00000430038 IFRD2Q12894 506 aaPredicted RBP18.19■□□□□ 0.5
CPSF4-203ENST00000430038 PSMD2Q13200 908 aa18.19■□□□□ 0.5
CPSF4-203ENST00000430038 BIRC3Q13489 604 aa18.19■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms