RNA–Protein interactions for RNA: ENST00000429896.6

PTCH1-207, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 6,563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-207ENST00000429896 CNKSR3Q6P9H4 555 aa13.51□□□□□ -0.25
PTCH1-207ENST00000429896 HERC6Q8IVU3 1022 aa13.51□□□□□ -0.25
PTCH1-207ENST00000429896 DBF4BQ8NFT6 615 aa13.51□□□□□ -0.25
PTCH1-207ENST00000429896 THG1LQ9NWX6 298 aaKnown RBP13.51□□□□□ -0.25
PTCH1-207ENST00000429896 WDR91A4D1P6 747 aa13.51□□□□□ -0.25
PTCH1-207ENST00000429896 TRIM32Q13049 653 aa13.51□□□□□ -0.25
PTCH1-207ENST00000429896 FBXO22Q8NEZ5 403 aa13.51□□□□□ -0.25
PTCH1-207ENST00000429896 FAM71BQ8TC56 605 aa13.51□□□□□ -0.25
PTCH1-207ENST00000429896 WDCPQ9H6R7 721 aa13.51□□□□□ -0.25
PTCH1-207ENST00000429896 TPX2Q9ULW0 747 aaKnown RBP13.51□□□□□ -0.25
PTCH1-207ENST00000429896 NVLO15381 856 aaKnown RBP13.51□□□□□ -0.25
PTCH1-207ENST00000429896 ATMINO43313 823 aaPredicted RBP13.51□□□□□ -0.25
PTCH1-207ENST00000429896 CXCL14O95715 111 aa13.51□□□□□ -0.25
PTCH1-207ENST00000429896 EOMESO95936 686 aa13.51□□□□□ -0.25
PTCH1-207ENST00000429896 YWHAQP27348 245 aa13.51□□□□□ -0.25
PTCH1-207ENST00000429896 C2orf54Q08AI8 447 aa13.51□□□□□ -0.25
PTCH1-207ENST00000429896 DNAJC17Q9NVM6 304 aaKnown RBP13.51□□□□□ -0.25
PTCH1-207ENST00000429896 ARHGAP28Q9P2N2 729 aa13.51□□□□□ -0.25
PTCH1-207ENST00000429896 TBK1Q9UHD2 729 aa13.51□□□□□ -0.25
PTCH1-207ENST00000429896 F9P00740 461 aa13.51□□□□□ -0.25
PTCH1-207ENST00000429896 LLGL2Q6P1M3 1020 aa13.51□□□□□ -0.25
PTCH1-207ENST00000429896 SLC2A14Q8TDB8 520 aa13.51□□□□□ -0.25
PTCH1-207ENST00000429896 RAB3IPQ96QF0 476 aaPredicted RBP13.51□□□□□ -0.25
PTCH1-207ENST00000429896 KCNF1Q9H3M0 494 aa13.51□□□□□ -0.25
PTCH1-207ENST00000429896 HACD3Q9P035 362 aa13.51□□□□□ -0.25
PTCH1-207ENST00000429896 CDH9Q9ULB4 789 aa13.51□□□□□ -0.25
PTCH1-207ENST00000429896 ANO9A1A5B4 782 aa13.5□□□□□ -0.25
PTCH1-207ENST00000429896 PPARGP37231 505 aaPredicted RBP13.5□□□□□ -0.25
PTCH1-207ENST00000429896 CDH8P55286 799 aa13.5□□□□□ -0.25
PTCH1-207ENST00000429896 ZNF211Q13398 564 aaPredicted RBP13.5□□□□□ -0.25
PTCH1-207ENST00000429896 MYH13Q9UKX3 1938 aa13.5□□□□□ -0.25
PTCH1-207ENST00000429896 SLC12A8A0AV02 714 aa13.5□□□□□ -0.25
PTCH1-207ENST00000429896 IRX4P78413 519 aa13.5□□□□□ -0.25
PTCH1-207ENST00000429896 CDH18Q13634 790 aa13.5□□□□□ -0.25
PTCH1-207ENST00000429896 ATPAF2Q8N5M1 289 aa13.5□□□□□ -0.25
PTCH1-207ENST00000429896 PCDHB8Q9UN66 801 aa13.5□□□□□ -0.25
PTCH1-207ENST00000429896 NT5C1B-RDH14C9J2C7 533 aa13.5□□□□□ -0.25
PTCH1-207ENST00000429896 F5H5T6 163 aa13.5□□□□□ -0.25
PTCH1-207ENST00000429896 H0Y626 953 aa13.5□□□□□ -0.25
PTCH1-207ENST00000429896 RABGAP1LQ5R372 815 aa13.5□□□□□ -0.25
PTCH1-207ENST00000429896 SLC47A2Q86VL8 602 aa13.5□□□□□ -0.25
PTCH1-207ENST00000429896 PGBD3Q8N328 593 aa13.5□□□□□ -0.25
PTCH1-207ENST00000429896 SMYD3Q9H7B4 428 aa13.5□□□□□ -0.25
PTCH1-207ENST00000429896 KLHL11Q9NVR0 708 aa13.5□□□□□ -0.25
PTCH1-207ENST00000429896 CAPN7Q9Y6W3 813 aa13.5□□□□□ -0.25
PTCH1-207ENST00000429896 OPLAHO14841 1288 aa13.5□□□□□ -0.25
PTCH1-207ENST00000429896 PTPN1P18031 435 aaKnown RBP13.5□□□□□ -0.25
PTCH1-207ENST00000429896 GLUD2P49448 558 aa13.5□□□□□ -0.25
PTCH1-207ENST00000429896 CFAP61Q8NHU2 1237 aa13.5□□□□□ -0.25
PTCH1-207ENST00000429896 ELMO3Q96BJ8 720 aa13.5□□□□□ -0.25
PTCH1-207ENST00000429896 EIF2AQ9BY44 585 aaKnown RBP13.5□□□□□ -0.25
PTCH1-207ENST00000429896 EDNRBP24530 442 aa13.5□□□□□ -0.25
PTCH1-207ENST00000429896 ANLNQ9NQW6 1124 aa13.5□□□□□ -0.25
PTCH1-207ENST00000429896 A0A0B4J269 797 aa13.49□□□□□ -0.25
PTCH1-207ENST00000429896 INPP1P49441 399 aa13.49□□□□□ -0.25
PTCH1-207ENST00000429896 SZRD1Q7Z422 152 aa13.49□□□□□ -0.25
PTCH1-207ENST00000429896 TTPALQ9BTX7 342 aa13.49□□□□□ -0.25
PTCH1-207ENST00000429896 SFMBT1Q9UHJ3 866 aa13.49□□□□□ -0.25
PTCH1-207ENST00000429896 SMIM28A0A1B0GU29 152 aa13.49□□□□□ -0.25
PTCH1-207ENST00000429896 MICAL2O94851 1124 aa13.49□□□□□ -0.25
PTCH1-207ENST00000429896 CCDC130P13994 396 aa13.49□□□□□ -0.25
PTCH1-207ENST00000429896 ZKSCAN8Q15776 578 aaPredicted RBP13.49□□□□□ -0.25
PTCH1-207ENST00000429896 CBWD6Q4V339 395 aa13.49□□□□□ -0.25
PTCH1-207ENST00000429896 CBWD3Q5JTY5 395 aa13.49□□□□□ -0.25
PTCH1-207ENST00000429896 CBWD5Q5RIA9 395 aa13.49□□□□□ -0.25
PTCH1-207ENST00000429896 PLPP4Q5VZY2 271 aa13.49□□□□□ -0.25
PTCH1-207ENST00000429896 INTUQ9ULD6 942 aa13.49□□□□□ -0.25
PTCH1-207ENST00000429896 NCK2O43639 380 aa13.49□□□□□ -0.25
PTCH1-207ENST00000429896 PFKMP08237 780 aa13.49□□□□□ -0.25
PTCH1-207ENST00000429896 BDNFP23560 247 aa13.49□□□□□ -0.25
PTCH1-207ENST00000429896 KRT33BQ14525 404 aa13.49□□□□□ -0.25
PTCH1-207ENST00000429896 FIGNQ5HY92 759 aa13.49□□□□□ -0.25
PTCH1-207ENST00000429896 ARHGAP24Q8N264 748 aa13.49□□□□□ -0.25
PTCH1-207ENST00000429896 GTF3C4Q9UKN8 822 aa13.49□□□□□ -0.25
PTCH1-207ENST00000429896 ARHGAP25P42331 645 aa13.49□□□□□ -0.25
PTCH1-207ENST00000429896 AMPD2Q01433 879 aa13.49□□□□□ -0.25
PTCH1-207ENST00000429896 POU5F1BQ06416 359 aa13.49□□□□□ -0.25
PTCH1-207ENST00000429896 PPP3CAQ08209 521 aa13.49□□□□□ -0.25
PTCH1-207ENST00000429896 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.49□□□□□ -0.25
PTCH1-207ENST00000429896 C9orf57Q5W0N0 161 aa13.49□□□□□ -0.25
PTCH1-207ENST00000429896 LCA5Q86VQ0 697 aa13.49□□□□□ -0.25
PTCH1-207ENST00000429896 C12orf56Q8IXR9 622 aa13.49□□□□□ -0.25
PTCH1-207ENST00000429896 LRRC52Q8N7C0 313 aa13.49□□□□□ -0.25
PTCH1-207ENST00000429896 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.49□□□□□ -0.25
PTCH1-207ENST00000429896 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.49□□□□□ -0.25
PTCH1-207ENST00000429896 CCDC188H7C350 402 aa13.49□□□□□ -0.25
PTCH1-207ENST00000429896 RNF40O75150 1001 aa13.49□□□□□ -0.25
PTCH1-207ENST00000429896 PDE1BQ01064 536 aa13.49□□□□□ -0.25
PTCH1-207ENST00000429896 ZNF177Q13360 481 aaPredicted RBP13.49□□□□□ -0.25
PTCH1-207ENST00000429896 ANGPTL8Q6UXH0 198 aa13.49□□□□□ -0.25
PTCH1-207ENST00000429896 TOP6BLQ8N6T0 577 aa13.49□□□□□ -0.25
PTCH1-207ENST00000429896 LRGUKQ96M69 825 aa13.49□□□□□ -0.25
PTCH1-207ENST00000429896 ST6GALNAC4Q9H4F1 302 aa13.49□□□□□ -0.25
PTCH1-207ENST00000429896 ABHD14A-ACY1A0A1B0GW23 586 aa13.48□□□□□ -0.25
PTCH1-207ENST00000429896 MRPS25P82663 173 aaKnown RBP13.48□□□□□ -0.25
PTCH1-207ENST00000429896 MTF1Q14872 753 aa13.48□□□□□ -0.25
PTCH1-207ENST00000429896 COBLL1Q53SF7 1204 aa13.48□□□□□ -0.25
PTCH1-207ENST00000429896 TC2NQ8N9U0 490 aa13.48□□□□□ -0.25
PTCH1-207ENST00000429896 EMID1Q96A84 441 aaPredicted RBP13.48□□□□□ -0.25
PTCH1-207ENST00000429896 MFSD14AQ96MC6 490 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms