RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 FNBP1LQ5T0N5 605 aa8.78□□□□□ -1
CD44-208ENST00000428726 IL31Q6EBC2 164 aa8.78□□□□□ -1
CD44-208ENST00000428726 HIBCHQ6NVY1 386 aaPredicted RBP8.78□□□□□ -1
CD44-208ENST00000428726 PPP1R21Q6ZMI0 780 aa8.78□□□□□ -1
CD44-208ENST00000428726 CTAGE3PQ8IX95 158 aa8.78□□□□□ -1
CD44-208ENST00000428726 CCDC110Q8TBZ0 833 aa8.78□□□□□ -1
CD44-208ENST00000428726 TRIM11Q96F44 468 aa8.78□□□□□ -1
CD44-208ENST00000428726 SEC16BQ96JE7 1060 aa8.78□□□□□ -1
CD44-208ENST00000428726 NAALADL1Q9UQQ1 740 aa8.78□□□□□ -1
CD44-208ENST00000428726 STK38LQ9Y2H1 464 aa8.78□□□□□ -1
CD44-208ENST00000428726 IGKV6D-21A0A0A0MT36 114 aa8.78□□□□□ -1
CD44-208ENST00000428726 EXOC1LA0A1B0GW35 172 aa8.78□□□□□ -1
CD44-208ENST00000428726 MYADML2A6NDP7 307 aa8.78□□□□□ -1
CD44-208ENST00000428726 RASA4BC9J798 803 aa8.78□□□□□ -1
CD44-208ENST00000428726 FSCN2O14926 492 aa8.78□□□□□ -1
CD44-208ENST00000428726 RASA4O43374 803 aa8.78□□□□□ -1
CD44-208ENST00000428726 PIGRP01833 764 aa8.78□□□□□ -1
CD44-208ENST00000428726 EDNRBP24530 442 aa8.78□□□□□ -1
CD44-208ENST00000428726 IVDP26440 423 aa8.78□□□□□ -1
CD44-208ENST00000428726 RDXP35241 583 aaKnown RBP8.78□□□□□ -1
CD44-208ENST00000428726 EIF3BP55884 814 aaKnown RBP8.78□□□□□ -1
CD44-208ENST00000428726 MXD4Q14582 209 aaPredicted RBP8.78□□□□□ -1
CD44-208ENST00000428726 CYP1B1Q16678 543 aa8.78□□□□□ -1
CD44-208ENST00000428726 CXCL17Q6UXB2 119 aa8.78□□□□□ -1
CD44-208ENST00000428726 FAM183BPQ6ZVS7 135 aa8.78□□□□□ -1
CD44-208ENST00000428726 CCDC89Q8N998 374 aa8.78□□□□□ -1
CD44-208ENST00000428726 ATL2Q8NHH9 583 aa8.78□□□□□ -1
CD44-208ENST00000428726 SPATA18Q8TC71 538 aa8.78□□□□□ -1
CD44-208ENST00000428726 RSAD2Q8WXG1 361 aa8.78□□□□□ -1
CD44-208ENST00000428726 AGAP3Q96P47 875 aa8.78□□□□□ -1
CD44-208ENST00000428726 ACAP3Q96P50 834 aa8.78□□□□□ -1
CD44-208ENST00000428726 UNKQ9C0B0 810 aaKnown RBP8.78□□□□□ -1
CD44-208ENST00000428726 ADAM7Q9H2U9 754 aa8.78□□□□□ -1
CD44-208ENST00000428726 AVENQ9NQS1 362 aaPredicted RBP8.78□□□□□ -1
CD44-208ENST00000428726 KLC4Q9NSK0 619 aa8.78□□□□□ -1
CD44-208ENST00000428726 SLC12A6Q9UHW9 1150 aa8.78□□□□□ -1
CD44-208ENST00000428726 A0A0C4DFX4 3053 aa8.78□□□□□ -1
CD44-208ENST00000428726 SPTLC1O15269 473 aa8.78□□□□□ -1
CD44-208ENST00000428726 ASAP2O43150 1006 aa8.78□□□□□ -1
CD44-208ENST00000428726 CREB3O43889 395 aa8.78□□□□□ -1
CD44-208ENST00000428726 HBP1O60381 514 aa8.78□□□□□ -1
CD44-208ENST00000428726 USP12O75317 370 aa8.78□□□□□ -1
CD44-208ENST00000428726 CYP2C9P11712 490 aa8.78□□□□□ -1
CD44-208ENST00000428726 NEFHP12036 1026 aa8.78□□□□□ -1
CD44-208ENST00000428726 MAGEA4P43358 317 aa8.78□□□□□ -1
CD44-208ENST00000428726 SPARCL1Q14515 664 aa8.78□□□□□ -1
CD44-208ENST00000428726 AGBL2Q5U5Z8 902 aa8.78□□□□□ -1
CD44-208ENST00000428726 OLFML2BQ68BL8 750 aa8.78□□□□□ -1
CD44-208ENST00000428726 DARS2Q6PI48 645 aaKnown RBP8.78□□□□□ -1
CD44-208ENST00000428726 WDR49Q8IV35 697 aa8.78□□□□□ -1
CD44-208ENST00000428726 IGDCC3Q8IVU1 814 aa8.78□□□□□ -1
CD44-208ENST00000428726 MOCOSQ96EN8 888 aa8.78□□□□□ -1
CD44-208ENST00000428726 SNF8Q96H20 258 aa8.78□□□□□ -1
CD44-208ENST00000428726 XPO6Q96QU8 1125 aaKnown RBP8.78□□□□□ -1
CD44-208ENST00000428726 C16orf70Q9BSU1 422 aa8.78□□□□□ -1
CD44-208ENST00000428726 TXLNGYQ9BZA5 131 aa8.78□□□□□ -1
CD44-208ENST00000428726 DHX35Q9H5Z1 703 aaKnown RBP8.78□□□□□ -1
CD44-208ENST00000428726 MRPL47Q9HD33 250 aaKnown RBP8.78□□□□□ -1
CD44-208ENST00000428726 ABCF3Q9NUQ8 709 aa8.78□□□□□ -1
CD44-208ENST00000428726 PNMA3Q9UL41 463 aa8.78□□□□□ -1
CD44-208ENST00000428726 LOC285556D6RIA3 1793 aa8.77□□□□□ -1
CD44-208ENST00000428726 TRIP11Q15643 1979 aa8.77□□□□□ -1.01
CD44-208ENST00000428726 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP8.77□□□□□ -1.01
CD44-208ENST00000428726 CASTOR2A6NHX0 329 aa8.77□□□□□ -1.01
CD44-208ENST00000428726 UGT1A9O60656 530 aa8.77□□□□□ -1.01
CD44-208ENST00000428726 RECQL4O94761 1208 aa8.77□□□□□ -1.01
CD44-208ENST00000428726 FAM107AO95990 144 aa8.77□□□□□ -1.01
CD44-208ENST00000428726 HMGCRP04035 888 aa8.77□□□□□ -1.01
CD44-208ENST00000428726 RBP3P10745 1247 aa8.77□□□□□ -1.01
CD44-208ENST00000428726 RFC5P40937 340 aa8.77□□□□□ -1.01
CD44-208ENST00000428726 FNTAP49354 379 aa8.77□□□□□ -1.01
CD44-208ENST00000428726 CTCFP49711 727 aaPredicted RBP8.77□□□□□ -1.01
CD44-208ENST00000428726 BCAR1P56945 870 aa8.77□□□□□ -1.01
CD44-208ENST00000428726 RNASELQ05823 741 aaKnown RBP8.77□□□□□ -1.01
CD44-208ENST00000428726 SOX4Q06945 474 aaPredicted RBP8.77□□□□□ -1.01
CD44-208ENST00000428726 BMPR2Q13873 1038 aa8.77□□□□□ -1.01
CD44-208ENST00000428726 MARCH8Q5T0T0 291 aa8.77□□□□□ -1.01
CD44-208ENST00000428726 TWF2Q6IBS0 349 aaKnown RBP8.77□□□□□ -1.01
CD44-208ENST00000428726 PLEKHA7Q6IQ23 1121 aa8.77□□□□□ -1.01
CD44-208ENST00000428726 MTHFD1LQ6UB35 978 aa8.77□□□□□ -1.01
CD44-208ENST00000428726 RFX8Q6ZV50 586 aa8.77□□□□□ -1.01
CD44-208ENST00000428726 TRAF3IP1Q8TDR0 691 aaPredicted RBP8.77□□□□□ -1.01
CD44-208ENST00000428726 ART4Q93070 314 aa8.77□□□□□ -1.01
CD44-208ENST00000428726 TMEM176AQ96HP8 235 aa8.77□□□□□ -1.01
CD44-208ENST00000428726 APOL2Q9BQE5 337 aa8.77□□□□□ -1.01
CD44-208ENST00000428726 UGT1A7Q9HAW7 530 aa8.77□□□□□ -1.01
CD44-208ENST00000428726 UGT1A10Q9HAW8 530 aa8.77□□□□□ -1.01
CD44-208ENST00000428726 UGT1A8Q9HAW9 530 aa8.77□□□□□ -1.01
CD44-208ENST00000428726 DCTN4Q9UJW0 460 aa8.77□□□□□ -1.01
CD44-208ENST00000428726 MAD1L1Q9Y6D9 718 aa8.77□□□□□ -1.01
CD44-208ENST00000428726 SCN1AP35498 2009 aa8.77□□□□□ -1.01
CD44-208ENST00000428726 CCDC195A0A1B0GUA6 201 aa8.77□□□□□ -1.01
CD44-208ENST00000428726 SCAMP3O14828 347 aaKnown RBP8.77□□□□□ -1.01
CD44-208ENST00000428726 TSPAN1O60635 241 aa8.77□□□□□ -1.01
CD44-208ENST00000428726 BEST1O76090 585 aa8.77□□□□□ -1.01
CD44-208ENST00000428726 APRTP07741 180 aa8.77□□□□□ -1.01
CD44-208ENST00000428726 SLC1A1P43005 524 aa8.77□□□□□ -1.01
CD44-208ENST00000428726 YWHAGP61981 247 aaKnown RBP eCLIP8.77□□□□□ -1.01
CD44-208ENST00000428726 TNFAIP2Q03169 654 aa8.77□□□□□ -1.01
CD44-208ENST00000428726 MCL1Q07820 350 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms