RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 C17orf99Q6UX52 265 aa11.12□□□□□ -0.63
TCOF1-204ENST00000427724 BZW1Q7L1Q6 419 aaKnown RBP11.12□□□□□ -0.63
TCOF1-204ENST00000427724 GET4Q7L5D6 327 aaPredicted RBP11.12□□□□□ -0.63
TCOF1-204ENST00000427724 TTC8Q8TAM2 541 aa11.12□□□□□ -0.63
TCOF1-204ENST00000427724 ISCUQ9H1K1 167 aa11.12□□□□□ -0.63
TCOF1-204ENST00000427724 PPME1Q9Y570 386 aa11.12□□□□□ -0.63
TCOF1-204ENST00000427724 INSL6Q9Y581 213 aa11.12□□□□□ -0.63
TCOF1-204ENST00000427724 KDM3BQ7LBC6 1761 aa11.12□□□□□ -0.63
TCOF1-204ENST00000427724 KPNA7A9QM74 516 aa11.12□□□□□ -0.63
TCOF1-204ENST00000427724 TXNDC9O14530 226 aa11.12□□□□□ -0.63
TCOF1-204ENST00000427724 MAFO75444 373 aaPredicted RBP11.12□□□□□ -0.63
TCOF1-204ENST00000427724 FGFR1P11362 822 aa11.12□□□□□ -0.63
TCOF1-204ENST00000427724 BRCC3P46736 316 aa11.12□□□□□ -0.63
TCOF1-204ENST00000427724 ADCY2Q08462 1091 aa11.12□□□□□ -0.63
TCOF1-204ENST00000427724 CCDC137Q6PK04 289 aaKnown RBP11.12□□□□□ -0.63
TCOF1-204ENST00000427724 TMC5Q6UXY8 1006 aa11.12□□□□□ -0.63
TCOF1-204ENST00000427724 ZNF571Q7Z3V5 609 aaPredicted RBP11.12□□□□□ -0.63
TCOF1-204ENST00000427724 MDM1Q8TC05 714 aa11.12□□□□□ -0.63
TCOF1-204ENST00000427724 ELMO3Q96BJ8 720 aa11.12□□□□□ -0.63
TCOF1-204ENST00000427724 ZFP42Q96MM3 310 aa11.12□□□□□ -0.63
TCOF1-204ENST00000427724 SMC6Q96SB8 1091 aa11.12□□□□□ -0.63
TCOF1-204ENST00000427724 MAP3K7O43318 606 aa11.12□□□□□ -0.63
TCOF1-204ENST00000427724 DARSP14868 501 aaKnown RBP11.12□□□□□ -0.63
TCOF1-204ENST00000427724 BDNFP23560 247 aa11.12□□□□□ -0.63
TCOF1-204ENST00000427724 TMED2Q15363 201 aa11.12□□□□□ -0.63
TCOF1-204ENST00000427724 FYB2Q5VWT5 728 aa11.12□□□□□ -0.63
TCOF1-204ENST00000427724 CEP128Q6ZU80 1094 aa11.12□□□□□ -0.63
TCOF1-204ENST00000427724 MCUQ8NE86 351 aa11.12□□□□□ -0.63
TCOF1-204ENST00000427724 ZNF564Q8TBZ8 553 aaPredicted RBP11.12□□□□□ -0.63
TCOF1-204ENST00000427724 CCHCR1Q8TD31 782 aa11.12□□□□□ -0.63
TCOF1-204ENST00000427724 SYN2Q92777 582 aaPredicted RBP11.12□□□□□ -0.63
TCOF1-204ENST00000427724 CHMP6Q96FZ7 201 aa11.12□□□□□ -0.63
TCOF1-204ENST00000427724 NUP85Q9BW27 656 aa11.12□□□□□ -0.63
TCOF1-204ENST00000427724 NOD2Q9HC29 1040 aa11.12□□□□□ -0.63
TCOF1-204ENST00000427724 FAM53CQ9NYF3 392 aa11.12□□□□□ -0.63
TCOF1-204ENST00000427724 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP11.11□□□□□ -0.63
TCOF1-204ENST00000427724 MIF4GDA9UHW6 222 aaKnown RBP11.11□□□□□ -0.63
TCOF1-204ENST00000427724 CDC25CP30307 473 aa11.11□□□□□ -0.63
TCOF1-204ENST00000427724 ZNF177Q13360 481 aaPredicted RBP11.11□□□□□ -0.63
TCOF1-204ENST00000427724 TFDP2Q14188 446 aa11.11□□□□□ -0.63
TCOF1-204ENST00000427724 CARNMT1Q8N4J0 409 aa11.11□□□□□ -0.63
TCOF1-204ENST00000427724 TPCN2Q8NHX9 752 aa11.11□□□□□ -0.63
TCOF1-204ENST00000427724 PPP4R1Q8TF05 950 aa11.11□□□□□ -0.63
TCOF1-204ENST00000427724 CLEC4DQ8WXI8 215 aa11.11□□□□□ -0.63
TCOF1-204ENST00000427724 KAT2BQ92831 832 aa11.11□□□□□ -0.63
TCOF1-204ENST00000427724 MIEF2Q96C03 454 aa11.11□□□□□ -0.63
TCOF1-204ENST00000427724 NXF3Q9H4D5 531 aaKnown RBP11.11□□□□□ -0.63
TCOF1-204ENST00000427724 CHST12Q9NRB3 414 aa11.11□□□□□ -0.63
TCOF1-204ENST00000427724 SMYD2Q9NRG4 433 aa11.11□□□□□ -0.63
TCOF1-204ENST00000427724 PPP1R11O60927 126 aaPredicted RBP11.11□□□□□ -0.63
TCOF1-204ENST00000427724 PON1P27169 355 aa11.11□□□□□ -0.63
TCOF1-204ENST00000427724 COG7P83436 770 aa11.11□□□□□ -0.63
TCOF1-204ENST00000427724 CCDC15Q0P6D6 951 aa11.11□□□□□ -0.63
TCOF1-204ENST00000427724 CFAP157Q5JU67 520 aa11.11□□□□□ -0.63
TCOF1-204ENST00000427724 EEF1DP3Q658K8 133 aa11.11□□□□□ -0.63
TCOF1-204ENST00000427724 JADE1Q6IE81 842 aa11.11□□□□□ -0.63
TCOF1-204ENST00000427724 SPOPLQ6IQ16 392 aa11.11□□□□□ -0.63
TCOF1-204ENST00000427724 CEP68Q76N32 757 aa11.11□□□□□ -0.63
TCOF1-204ENST00000427724 TRIM59Q8IWR1 403 aa11.11□□□□□ -0.63
TCOF1-204ENST00000427724 USP33Q8TEY7 942 aa11.11□□□□□ -0.63
TCOF1-204ENST00000427724 C1orf54Q8WWF1 131 aa11.11□□□□□ -0.63
TCOF1-204ENST00000427724 DDX23Q9BUQ8 820 aaKnown RBP11.11□□□□□ -0.63
TCOF1-204ENST00000427724 ASB7Q9H672 318 aa11.11□□□□□ -0.63
TCOF1-204ENST00000427724 SLC26A4O43511 780 aa11.11□□□□□ -0.63
TCOF1-204ENST00000427724 CDH8P55286 799 aa11.11□□□□□ -0.63
TCOF1-204ENST00000427724 PTK7Q13308 1070 aa11.11□□□□□ -0.63
TCOF1-204ENST00000427724 DRP2Q13474 957 aa11.11□□□□□ -0.63
TCOF1-204ENST00000427724 CAPSQ13938 189 aa11.11□□□□□ -0.63
TCOF1-204ENST00000427724 ZPBP2Q6X784 338 aa11.11□□□□□ -0.63
TCOF1-204ENST00000427724 FAM47EQ6ZV65 393 aa11.11□□□□□ -0.63
TCOF1-204ENST00000427724 ARHGAP18Q8N392 663 aa11.11□□□□□ -0.63
TCOF1-204ENST00000427724 EFHBQ8N7U6 833 aa11.11□□□□□ -0.63
TCOF1-204ENST00000427724 CEP120Q8N960 986 aa11.11□□□□□ -0.63
TCOF1-204ENST00000427724 PXYLP1Q8TE99 480 aa11.11□□□□□ -0.63
TCOF1-204ENST00000427724 APBB2Q92870 758 aa11.11□□□□□ -0.63
TCOF1-204ENST00000427724 TCF25Q9BQ70 676 aa11.11□□□□□ -0.63
TCOF1-204ENST00000427724 OSBPL1AQ9BXW6 950 aa11.11□□□□□ -0.63
TCOF1-204ENST00000427724 UMODL1Q5DID0 1318 aa11.11□□□□□ -0.63
TCOF1-204ENST00000427724 RASSF10A6NK89 507 aa11.1□□□□□ -0.63
TCOF1-204ENST00000427724 ZNF263O14978 683 aa11.1□□□□□ -0.63
TCOF1-204ENST00000427724 PFDN1O60925 122 aa11.1□□□□□ -0.63
TCOF1-204ENST00000427724 AKAP3O75969 853 aa11.1□□□□□ -0.63
TCOF1-204ENST00000427724 CCNE2O96020 404 aa11.1□□□□□ -0.63
TCOF1-204ENST00000427724 ARF4P18085 180 aaPredicted RBP11.1□□□□□ -0.63
TCOF1-204ENST00000427724 HDCP19113 662 aa11.1□□□□□ -0.63
TCOF1-204ENST00000427724 ACADSBP45954 432 aa11.1□□□□□ -0.63
TCOF1-204ENST00000427724 GLUD2P49448 558 aa11.1□□□□□ -0.63
TCOF1-204ENST00000427724 AP1B1Q10567 949 aa11.1□□□□□ -0.63
TCOF1-204ENST00000427724 THOC5Q13769 683 aaKnown RBP11.1□□□□□ -0.63
TCOF1-204ENST00000427724 UGCGQ16739 394 aa11.1□□□□□ -0.63
TCOF1-204ENST00000427724 LGSNQ5TDP6 509 aa11.1□□□□□ -0.63
TCOF1-204ENST00000427724 WSCD1Q658N2 575 aa11.1□□□□□ -0.63
TCOF1-204ENST00000427724 ANKS3Q6ZW76 656 aa11.1□□□□□ -0.63
TCOF1-204ENST00000427724 SHISA4Q96DD7 197 aa11.1□□□□□ -0.63
TCOF1-204ENST00000427724 ABHD8Q96I13 439 aa11.1□□□□□ -0.63
TCOF1-204ENST00000427724 AGPAT1Q99943 283 aa11.1□□□□□ -0.63
TCOF1-204ENST00000427724 OSGEPQ9NPF4 335 aa11.1□□□□□ -0.63
TCOF1-204ENST00000427724 APEX2Q9UBZ4 518 aa11.1□□□□□ -0.63
TCOF1-204ENST00000427724 TTC7AQ9ULT0 858 aaPredicted RBP11.1□□□□□ -0.63
TCOF1-204ENST00000427724 H3BRJ5 948 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms