RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 HOXB13Q92826 284 aaPredicted RBP2.93□□□□□ -1.94
VPS13A-208ENST00000423463 FATE1Q969F0 183 aa2.93□□□□□ -1.94
VPS13A-208ENST00000423463 EVI5LQ96CN4 794 aa2.93□□□□□ -1.94
VPS13A-208ENST00000423463 EDC3Q96F86 508 aaKnown RBP2.93□□□□□ -1.94
VPS13A-208ENST00000423463 MYOCQ99972 504 aa2.93□□□□□ -1.94
VPS13A-208ENST00000423463 RIOK1Q9BRS2 568 aaKnown RBP2.93□□□□□ -1.94
VPS13A-208ENST00000423463 CRNKL1Q9BZJ0 848 aaKnown RBP2.93□□□□□ -1.94
VPS13A-208ENST00000423463 OSBPL5Q9H0X9 879 aaPredicted RBP2.93□□□□□ -1.94
VPS13A-208ENST00000423463 DDX4Q9NQI0 724 aaKnown RBP2.93□□□□□ -1.94
VPS13A-208ENST00000423463 PI4KBQ9UBF8 816 aa2.93□□□□□ -1.94
VPS13A-208ENST00000423463 AJAP1Q9UKB5 411 aaPredicted RBP2.93□□□□□ -1.94
VPS13A-208ENST00000423463 KLHL33A6NCF5 533 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 MANSC4A6NHS7 340 aaPredicted RBP2.92□□□□□ -1.94
VPS13A-208ENST00000423463 LEFTY2O00292 366 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 CA12O43570 354 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 MARCH6O60337 910 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 CTNND1O60716 968 aaKnown RBP2.92□□□□□ -1.94
VPS13A-208ENST00000423463 MFAP3LO75121 409 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 PARNO95453 639 aaKnown RBP2.92□□□□□ -1.94
VPS13A-208ENST00000423463 HLA-DOAP06340 250 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 SREBF1P36956 1147 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 TM4SF4P48230 202 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 MAN2A2P49641 1150 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 NEK2P51955 445 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 GRM1Q13255 1194 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 PICALMQ13492 652 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 MFSD5Q6N075 450 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 MIGA2Q7L4E1 593 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 RASAL3Q86YV0 1011 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 MAPKAPK5Q8IW41 473 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 ANKRD35Q8N283 1001 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 MIGA1Q8NAN2 632 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 OR7D4Q8NG98 312 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 NRG4Q8WWG1 115 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 MNTQ99583 582 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 KRTAP4-9Q9BYQ8 210 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 CSRNP2Q9H175 543 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 ATP8A2Q9NTI2 1148 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 HERC5Q9UII4 1024 aaKnown RBP2.92□□□□□ -1.94
VPS13A-208ENST00000423463 SORCS3Q9UPU3 1222 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 TESMINQ9Y4I5 508 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 RFX7Q2KHR2 1363 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 ATRNL1Q5VV63 1379 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 POLR2AP24928 1970 aaKnown RBP2.92□□□□□ -1.94
VPS13A-208ENST00000423463 COL2A1P02458 1487 aaPredicted RBP2.92□□□□□ -1.94
VPS13A-208ENST00000423463 C1QTNF3-AMACRE9PGA6 284 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 RAP2AP10114 183 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 APOBEC3AP31941 199 aaPredicted RBP2.92□□□□□ -1.94
VPS13A-208ENST00000423463 CRHR1P34998 444 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 RAP2BP61225 183 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 KRT85P78386 507 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 PPATQ06203 517 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 MCL1Q07820 350 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 MGAT2Q10469 447 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 ANO4Q32M45 955 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 C3orf36Q3SXR2 165 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 C19orf54Q5BKX5 351 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 TSHZ3Q63HK5 1081 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 ERO1BQ86YB8 467 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 SYT12Q8IV01 421 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 CHMP4CQ96CF2 233 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 CLMNQ96JQ2 1002 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 STRBPQ96SI9 672 aaKnown RBP2.92□□□□□ -1.94
VPS13A-208ENST00000423463 FSD1Q9BTV5 496 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 SLC13A1Q9BZW2 595 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 SENP6Q9GZR1 1112 aaPredicted RBP2.92□□□□□ -1.94
VPS13A-208ENST00000423463 KCNH6Q9H252 994 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 ARMT1Q9H993 441 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 SLC2A4RGQ9NR83 387 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 CEP72Q9P209 647 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 G3BP2Q9UN86 482 aaKnown RBP2.92□□□□□ -1.94
VPS13A-208ENST00000423463 LIMCH1Q9UPQ0 1083 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 PCDHA13Q9Y5I0 950 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 MRFAP1Q9Y605 127 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 TRPM7Q96QT4 1865 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 FLT1P17948 1338 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 PAPPA2Q9BXP8 1791 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 AKAP11Q9UKA4 1901 aa2.92□□□□□ -1.94
VPS13A-208ENST00000423463 E2F8A0AVK6 867 aa2.91□□□□□ -1.94
VPS13A-208ENST00000423463 CXCL11O14625 94 aa2.91□□□□□ -1.94
VPS13A-208ENST00000423463 PHF2O75151 1096 aa2.91□□□□□ -1.94
VPS13A-208ENST00000423463 MBD4O95243 580 aa2.91□□□□□ -1.94
VPS13A-208ENST00000423463 HSPA1AP0DMV8 641 aaKnown RBP2.91□□□□□ -1.94
VPS13A-208ENST00000423463 HSPA1BP0DMV9 641 aaKnown RBP2.91□□□□□ -1.94
VPS13A-208ENST00000423463 RBP3P10745 1247 aa2.91□□□□□ -1.94
VPS13A-208ENST00000423463 C6P13671 934 aa2.91□□□□□ -1.94
VPS13A-208ENST00000423463 ALOX15P16050 662 aaPredicted RBP2.91□□□□□ -1.94
VPS13A-208ENST00000423463 CTCFP49711 727 aaPredicted RBP2.91□□□□□ -1.94
VPS13A-208ENST00000423463 SLC25A3Q00325 362 aa2.91□□□□□ -1.94
VPS13A-208ENST00000423463 SREBF2Q12772 1141 aa2.91□□□□□ -1.94
VPS13A-208ENST00000423463 PPIL2Q13356 520 aa2.91□□□□□ -1.94
VPS13A-208ENST00000423463 VGLL4Q14135 290 aa2.91□□□□□ -1.94
VPS13A-208ENST00000423463 NFE2Q16621 373 aaPredicted RBP2.91□□□□□ -1.94
VPS13A-208ENST00000423463 UAP1L1Q3KQV9 507 aa2.91□□□□□ -1.94
VPS13A-208ENST00000423463 LCE5AQ5TCM9 118 aa2.91□□□□□ -1.94
VPS13A-208ENST00000423463 OTUD7BQ6GQQ9 843 aa2.91□□□□□ -1.94
VPS13A-208ENST00000423463 CENPQQ7L2Z9 268 aaPredicted RBP2.91□□□□□ -1.94
VPS13A-208ENST00000423463 SCYL3Q8IZE3 742 aa2.91□□□□□ -1.94
VPS13A-208ENST00000423463 Q8N1X5 172 aa2.91□□□□□ -1.94
VPS13A-208ENST00000423463 LCORLQ8N3X6 602 aa2.91□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms