RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 SNRNP35Q16560 246 aaKnown RBP7.11□□□□□ -1.27
SCN1A-204ENST00000423058 LMBRD2Q68DH5 695 aaPredicted RBP7.11□□□□□ -1.27
SCN1A-204ENST00000423058 MACC1Q6ZN28 852 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 INPP5DQ92835 1189 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 PARD6BQ9BYG5 372 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 C10orf88Q9H8K7 445 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 GUCY1B2O75343 617 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 HIST1H2ABP04908 130 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 RAG1P15918 1043 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 SSTR3P32745 418 aaPredicted RBP7.1□□□□□ -1.27
SCN1A-204ENST00000423058 GEMP55040 296 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 CREMQ03060 361 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 EN1Q05925 392 aaPredicted RBP7.1□□□□□ -1.27
SCN1A-204ENST00000423058 RCN1Q15293 331 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 HIST3H2AQ7L7L0 130 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 ELOA2Q8IYF1 753 aaPredicted RBP7.1□□□□□ -1.27
SCN1A-204ENST00000423058 HIST1H2ACQ93077 130 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 GPR101Q96P66 508 aaPredicted RBP7.1□□□□□ -1.27
SCN1A-204ENST00000423058 PNKPQ96T60 521 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 MOV10L1Q9BXT6 1211 aaKnown RBP7.1□□□□□ -1.27
SCN1A-204ENST00000423058 DRG1Q9Y295 367 aaKnown RBP7.1□□□□□ -1.27
SCN1A-204ENST00000423058 AXIN2Q9Y2T1 843 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 ERBB3P21860 1342 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 MYH6P13533 1939 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 CENPXA8MT69 81 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 CD2BP2O95400 341 aaKnown RBP7.1□□□□□ -1.27
SCN1A-204ENST00000423058 NPTXRO95502 500 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 CTSEP14091 401 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 KLRC2P26717 231 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 LSP1P33241 339 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 PTGER2P43116 358 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 PSMD7P51665 324 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 IL2P60568 153 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 CCDC144BQ3MJ40 725 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 STYK1Q6J9G0 422 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 OTOAQ7RTW8 1153 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 C19orf18Q8NEA5 215 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 TRABDQ9H4I3 376 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 FBXO44Q9H4M3 255 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 MTO1Q9Y2Z2 717 aaKnown RBP7.1□□□□□ -1.27
SCN1A-204ENST00000423058 CDHR2Q9BYE9 1310 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 NKRFO15226 690 aaKnown RBP eCLIP7.1□□□□□ -1.27
SCN1A-204ENST00000423058 F9P00740 461 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 CYP2A7P20853 494 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 FGFR2P21802 821 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 PTPN7P35236 360 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 RGS7P49802 495 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 BYSLQ13895 437 aaKnown RBP7.1□□□□□ -1.27
SCN1A-204ENST00000423058 NOL9Q5SY16 702 aaKnown RBP7.1□□□□□ -1.27
SCN1A-204ENST00000423058 ANGEL2Q5VTE6 544 aaKnown RBP7.1□□□□□ -1.27
SCN1A-204ENST00000423058 USP7Q93009 1102 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 TMEM143Q96AN5 459 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 SH3GL3Q99963 347 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 PACSIN1Q9BY11 444 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 PRKD2Q9BZL6 878 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 FANCEQ9HB96 536 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 TMEM8AQ9HCN3 771 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 ZMYM2Q9UBW7 1377 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 ALDH2P05091 517 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 CAPN1P07384 714 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 ITIH2P19823 946 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 INAQ16352 499 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 TXNRD1Q16881 649 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 ZNF746Q6NUN9 644 aaPredicted RBP7.1□□□□□ -1.27
SCN1A-204ENST00000423058 CNDP1Q96KN2 507 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 THUMPD3Q9BV44 507 aaKnown RBP7.1□□□□□ -1.27
SCN1A-204ENST00000423058 REXO4Q9GZR2 422 aaKnown RBP7.1□□□□□ -1.27
SCN1A-204ENST00000423058 RANBP17Q9H2T7 1088 aaKnown RBP7.1□□□□□ -1.27
SCN1A-204ENST00000423058 MROH8Q9H579 483 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 AVENQ9NQS1 362 aaPredicted RBP7.1□□□□□ -1.27
SCN1A-204ENST00000423058 DPP3Q9NY33 737 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 GPN3Q9UHW5 284 aaPredicted RBP7.1□□□□□ -1.27
SCN1A-204ENST00000423058 PITPNM2Q9BZ72 1349 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 PDZK1P1A8MUH7 402 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 PHF2O75151 1096 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 NUDT14O95848 222 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 POMCP01189 267 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 ACOT2P49753 483 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 TBC1D25Q3MII6 688 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 ARMCX4Q5H9R4 360 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 USP33Q8TEY7 942 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 ZNF304Q9HCX3 659 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 NEUROD4Q9HD90 331 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 MYOZ2Q9NPC6 264 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 STARD7Q9NQZ5 370 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 PCDHB9Q9Y5E1 797 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 CLTCQ00610 1675 aaKnown RBP7.1□□□□□ -1.27
SCN1A-204ENST00000423058 MYH7P12883 1935 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 USP1O94782 785 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 ZNF484Q5JVG2 852 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 VN1R5Q7Z5H4 357 aa7.1□□□□□ -1.27
SCN1A-204ENST00000423058 RTL3Q8N8U3 475 aaKnown RBP7.1□□□□□ -1.27
SCN1A-204ENST00000423058 SPRTNQ9H040 489 aaPredicted RBP7.1□□□□□ -1.27
SCN1A-204ENST00000423058 PPIEQ9UNP9 301 aaKnown RBP7.1□□□□□ -1.27
SCN1A-204ENST00000423058 FAM220BPB1ANY3 271 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 POLRMTO00411 1230 aaKnown RBP7.09□□□□□ -1.27
SCN1A-204ENST00000423058 TBX3O15119 743 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 ZC3H11AO75152 810 aaKnown RBP eCLIP7.09□□□□□ -1.272e-6■□□□□ 9.4
SCN1A-204ENST00000423058 B3GAT3O94766 335 aa7.09□□□□□ -1.27
SCN1A-204ENST00000423058 FEN1P39748 380 aaKnown RBP7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms